Wall clock time and date at job start Wed Apr 1 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 N 1.46500 * 109.47232 * 119.99977 * 2 1 3 5 5 C 1.46507 * 119.99538 * 331.26298 * 4 2 1 6 6 C 1.50700 * 109.46982 * 269.99750 * 5 4 2 7 7 H 1.08004 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00049 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00137 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99924 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47220 * 90.00042 * 10 8 6 12 12 H 1.48507 * 109.47243 * 209.99723 * 10 8 6 13 13 H 1.48499 * 109.47537 * 329.99902 * 10 8 6 14 14 C 1.34778 * 120.00470 * 151.26045 * 4 2 1 15 15 O 1.21354 * 119.99930 * 177.77210 * 14 4 2 16 16 C 1.49366 * 119.99546 * 357.77165 * 14 4 2 17 17 O 1.21358 * 120.00549 * 8.04545 * 16 14 4 18 18 N 1.34778 * 119.99563 * 188.05313 * 16 14 4 19 19 C 1.39251 * 119.99682 * 186.14405 * 18 16 14 20 20 C 1.39098 * 119.78382 * 174.92803 * 19 18 16 21 21 C 1.38118 * 118.77398 * 180.10805 * 20 19 18 22 22 C 1.39378 * 118.98468 * 359.90450 * 21 20 19 23 23 C 1.37545 * 119.29369 * 359.93323 * 22 21 20 24 24 N 1.32023 * 119.78365 * 354.94062 * 19 18 16 25 25 C 1.50732 * 122.34731 * 180.41357 * 23 22 21 26 26 C 1.52719 * 110.58302 * 342.10810 * 25 23 22 27 27 C 1.53322 * 108.42075 * 51.29685 * 26 25 23 28 28 C 1.50512 * 117.87920 * 179.71914 * 22 21 20 29 29 H 1.08993 * 109.47365 * 309.18209 * 1 2 3 30 30 H 1.09005 * 109.46956 * 69.18853 * 1 2 3 31 31 H 1.09001 * 109.47295 * 189.18123 * 1 2 3 32 32 H 1.09000 * 109.47170 * 239.99792 * 2 1 3 33 33 H 1.09007 * 109.47279 * 169.83868 * 3 2 1 34 34 H 1.08997 * 109.47420 * 289.83845 * 3 2 1 35 35 H 1.09000 * 109.47322 * 49.84203 * 3 2 1 36 36 H 1.08994 * 109.47526 * 29.99660 * 5 4 2 37 37 H 1.09000 * 109.46671 * 150.00139 * 5 4 2 38 38 H 0.97000 * 119.99971 * 179.97438 * 9 8 6 39 39 H 0.96996 * 120.00613 * 6.13926 * 18 16 14 40 40 H 1.08002 * 120.61206 * 0.13500 * 20 19 18 41 41 H 1.08004 * 120.50332 * 180.17351 * 21 20 19 42 42 H 1.09004 * 109.25187 * 221.82532 * 25 23 22 43 43 H 1.09002 * 109.22862 * 102.37663 * 25 23 22 44 44 H 1.08997 * 109.67621 * 291.55759 * 26 25 23 45 45 H 1.09003 * 109.67616 * 171.02790 * 26 25 23 46 46 H 1.09004 * 109.68594 * 170.43779 * 27 26 25 47 47 H 1.09000 * 109.69217 * 49.85926 * 27 26 25 48 48 H 1.09001 * 109.25576 * 282.96827 * 28 22 21 49 49 H 1.09003 * 109.25941 * 42.40095 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.2136 -0.6930 2.4204 6 6 1.5817 0.4989 3.2659 7 1 2.3391 1.1894 2.9251 8 6 0.9517 0.7080 4.4743 9 7 0.0291 -0.1325 4.8890 10 14 1.4076 2.1858 5.5219 11 1 0.5449 3.3376 5.1553 12 1 1.2096 1.8559 6.9563 13 1 2.8308 2.5390 5.2872 14 6 3.2078 -1.3238 1.1704 15 8 3.6309 -1.8613 2.1728 16 6 4.0053 -1.3638 -0.0919 17 8 3.6569 -0.7068 -1.0509 18 7 5.1118 -2.1298 -0.1659 19 6 5.9256 -2.0702 -1.2943 20 6 7.1207 -2.7814 -1.3226 21 6 7.9129 -2.7056 -2.4514 22 6 7.4883 -1.9220 -3.5231 23 6 6.2937 -1.2466 -3.4312 24 7 5.5580 -1.3387 -2.3301 25 6 5.7646 -0.3878 -4.5513 26 6 6.8819 -0.0341 -5.5305 27 6 7.5931 -1.3285 -5.9422 28 6 8.3739 -1.8520 -4.7381 29 1 -0.3634 0.6492 0.7965 30 1 -0.3633 0.3651 -0.9607 31 1 -0.3634 -1.0145 0.1640 32 1 1.8933 -0.5139 -0.8900 33 1 3.1148 1.4479 0.1813 34 1 1.8323 1.9013 -0.9666 35 1 1.5363 2.0060 0.7854 36 1 0.1563 -0.6413 2.1604 37 1 1.4059 -1.6085 2.9798 38 1 -0.4138 0.0144 5.7393 39 1 5.3413 -2.7226 0.5668 40 1 7.4232 -3.3823 -0.4777 41 1 8.8450 -3.2486 -2.5045 42 1 5.3478 0.5293 -4.1350 43 1 4.9813 -0.9306 -5.0805 44 1 7.5924 0.6380 -5.0493 45 1 6.4587 0.4483 -6.4116 46 1 8.2791 -1.1250 -6.7645 47 1 6.8565 -2.0696 -6.2525 48 1 9.2111 -1.1843 -4.5347 49 1 8.7557 -2.8480 -4.9626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873818009.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:57 Heat of formation + Delta-G solvation = -41.028025 kcal Electronic energy + Delta-G solvation = -30787.225104 eV Core-core repulsion = 26713.910694 eV Total energy + Delta-G solvation = -4073.314410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.33545 -41.36641 -39.62025 -38.16803 -37.50537 -35.40033 -34.90292 -34.21763 -32.57744 -30.92321 -30.47375 -29.81944 -28.10760 -26.73919 -25.20707 -24.34347 -23.83754 -23.37061 -22.25188 -21.18638 -20.48661 -18.82361 -18.71668 -18.48981 -17.68804 -17.30348 -16.96828 -16.60369 -16.56631 -16.07934 -15.73493 -15.38099 -15.29551 -15.04952 -14.85826 -14.70419 -14.48078 -14.26675 -14.20809 -13.90313 -13.63410 -13.52442 -13.35832 -13.14178 -13.01125 -12.96779 -12.87624 -12.58354 -12.38919 -12.20958 -12.19166 -11.80266 -11.77557 -11.65488 -11.60991 -11.47496 -11.38894 -10.62082 -10.61232 -10.59389 -9.91110 -9.61638 -9.12529 -8.22827 -6.34993 -0.12088 0.31359 0.66080 1.22397 1.36318 1.37963 1.48767 2.12407 2.35001 2.45799 2.83042 3.05711 3.11231 3.45476 3.74361 3.93408 3.95345 4.00718 4.06006 4.08494 4.22567 4.30517 4.38356 4.48566 4.60273 4.68788 4.70896 4.77815 4.80062 4.89299 4.89811 4.93817 4.98318 5.06551 5.10178 5.12125 5.15136 5.16957 5.27570 5.28743 5.32088 5.42214 5.43732 5.49297 5.54410 5.70334 5.80534 5.88435 6.03965 6.37989 6.65248 6.71397 6.99363 7.18071 7.33932 8.84816 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.002606 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.397421 B =10742.648696 C =11280.245826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.114 3.886 3 C -0.135 4.135 4 N -0.559 5.559 5 C 0.253 3.747 6 C -0.535 4.535 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.961 3.039 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.487 3.513 15 O -0.559 6.559 16 C 0.505 3.495 17 O -0.456 6.456 18 N -0.632 5.632 19 C 0.332 3.668 20 C -0.199 4.199 21 C -0.048 4.048 22 C -0.156 4.156 23 C 0.140 3.860 24 N -0.518 5.518 25 C -0.067 4.067 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.069 4.069 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.006 0.994 38 H 0.268 0.732 39 H 0.434 0.566 40 H 0.163 0.837 41 H 0.176 0.824 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.726 -4.195 -23.427 29.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 C -0.193 4.193 4 N -0.290 5.290 5 C 0.133 3.867 6 C -0.573 4.573 7 H 0.067 0.933 8 C -0.186 4.186 9 N -0.564 5.564 10 Si 0.786 3.214 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.201 1.201 14 C 0.269 3.731 15 O -0.439 6.439 16 C 0.286 3.714 17 O -0.325 6.325 18 N -0.281 5.281 19 C 0.100 3.900 20 C -0.221 4.221 21 C -0.073 4.073 22 C -0.159 4.159 23 C 0.004 3.996 24 N -0.234 5.234 25 C -0.105 4.105 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.107 4.107 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.274 0.726 40 H 0.181 0.819 41 H 0.194 0.806 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.662 -3.528 -23.340 28.329 hybrid contribution 0.471 -0.080 1.890 1.949 sum 16.133 -3.608 -21.451 27.082 Atomic orbital electron populations 1.22059 0.93497 1.02013 1.03159 1.21902 0.95541 0.94089 0.87222 1.21941 0.99493 0.95737 1.02106 1.48400 1.17538 1.48286 1.14740 1.19093 0.90968 0.96203 0.80471 1.21559 1.21583 1.09662 1.04522 0.93257 1.25722 0.94842 0.99512 0.98476 1.70026 1.26309 1.37937 1.22096 0.85510 0.78509 0.79466 0.77912 1.19079 1.20379 1.20127 1.20229 0.83229 0.81194 0.88467 1.90694 1.69486 1.47600 1.36159 1.20308 0.82131 0.80901 0.88057 1.90688 1.65191 1.39501 1.37151 1.43187 1.23138 1.42412 1.19334 1.18578 0.89833 0.94757 0.86810 1.21792 0.93870 1.03950 1.02510 1.21823 0.99607 0.95434 0.90458 1.20803 0.96583 0.99432 0.99042 1.21327 0.90904 0.95336 0.92028 1.67322 1.35445 1.20044 1.00581 1.20397 0.99149 0.98043 0.92936 1.21565 0.96722 0.98335 0.98485 1.21590 0.99744 0.96691 0.97632 1.20446 0.96515 1.03346 0.90369 0.93049 0.88741 0.92855 0.86486 0.95124 0.89848 0.93434 0.93510 0.97548 0.92350 0.72567 0.81899 0.80631 0.91444 0.90066 0.91616 0.89495 0.89054 0.91861 0.89428 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 7.93 71.98 0.57 -4.58 16 2 C 0.11 4.38 2.64 44.99 0.12 4.50 16 3 C -0.13 -5.02 9.01 71.98 0.65 -4.37 16 4 N -0.56 -25.74 2.41 -803.82 -1.94 -27.68 16 5 C 0.25 13.67 4.80 85.63 0.41 14.08 16 6 C -0.53 -30.92 9.39 25.60 0.24 -30.68 16 7 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 8 C 0.01 0.79 5.46 84.65 0.46 1.26 16 9 N -0.92 -55.20 13.29 21.45 0.28 -54.91 16 10 Si 0.96 45.34 29.54 68.60 2.03 47.36 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.49 21.97 7.73 87.24 0.67 22.64 16 15 O -0.56 -28.14 16.12 -3.26 -0.05 -28.19 16 16 C 0.51 19.23 7.70 87.24 0.67 19.90 16 17 O -0.46 -17.80 10.59 -3.27 -0.03 -17.83 16 18 N -0.63 -19.66 5.36 -310.01 -1.66 -21.32 16 19 C 0.33 9.43 7.42 133.08 0.99 10.42 16 20 C -0.20 -3.91 9.96 22.45 0.22 -3.68 16 21 C -0.05 -0.73 9.74 22.52 0.22 -0.51 16 22 C -0.16 -2.72 5.74 -19.81 -0.11 -2.83 16 23 C 0.14 3.37 6.62 42.27 0.28 3.65 16 24 N -0.52 -16.11 7.72 -181.26 -1.40 -17.51 16 25 C -0.07 -1.34 5.91 29.76 0.18 -1.16 16 26 C -0.11 -1.41 5.97 30.61 0.18 -1.23 16 27 C -0.12 -1.11 5.98 30.62 0.18 -0.93 16 28 C -0.07 -0.68 5.68 29.71 0.17 -0.52 16 29 H 0.05 1.98 7.23 -2.39 -0.02 1.96 16 30 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.05 1.84 7.85 -2.39 -0.02 1.82 16 32 H 0.12 4.36 5.15 -5.46 -0.03 4.33 16 33 H 0.03 1.22 7.74 -2.38 -0.02 1.20 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 36 H 0.05 2.52 5.70 -2.39 -0.01 2.51 16 37 H 0.01 0.39 7.45 -2.39 -0.02 0.38 16 38 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.43 11.74 8.23 -92.71 -0.76 10.97 16 40 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 44 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 45 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.06 0.66 8.10 -2.39 -0.02 0.64 16 48 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.09 0.59 8.13 -2.39 -0.02 0.57 16 Total: -1.00 -75.37 394.96 3.52 -71.85 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.19 Total: 22.27 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 6.10 Total: 25.96 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -4.71 Total: -121.42 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.09 Total: -46.02 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.37 3.52 -71.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873818009.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.821 kcal (2) G-P(sol) polarization free energy of solvation -75.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds