Wall clock time and date at job start Wed Apr 1 2020 03:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 N 1.46493 * 109.47212 * 120.00429 * 2 1 3 5 5 C 1.34418 * 124.35106 * 299.97514 * 4 2 1 6 6 O 1.21288 * 124.94305 * 359.60727 * 5 4 2 7 7 C 1.51281 * 110.11952 * 179.57371 * 5 4 2 8 8 C 1.54631 * 104.31067 * 343.67722 * 7 5 4 9 9 C 1.46765 * 124.35316 * 119.95210 * 4 2 1 10 10 H 1.09002 * 110.24650 * 78.03034 * 9 4 2 11 11 C 1.50707 * 110.24051 * 316.12636 * 9 4 2 12 12 O 1.21280 * 120.00051 * 359.97438 * 11 9 4 13 13 N 1.34774 * 119.99581 * 180.02562 * 11 9 4 14 14 C 1.46498 * 120.00586 * 359.97438 * 13 11 9 15 15 C 1.50701 * 109.46964 * 90.00139 * 14 13 11 16 16 H 1.08003 * 119.99910 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00222 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00626 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99844 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47122 * 90.00334 * 19 17 15 21 21 H 1.48500 * 109.46787 * 209.99951 * 19 17 15 22 22 H 1.48492 * 109.46999 * 329.99949 * 19 17 15 23 23 C 1.46503 * 119.99697 * 179.97438 * 13 11 9 24 24 C 1.50706 * 109.47071 * 89.99854 * 23 13 11 25 25 C 1.38667 * 120.41873 * 90.00000 * 24 23 13 26 26 C 1.38629 * 118.42058 * 179.97438 * 25 24 23 27 27 C 1.38229 * 119.15962 * 0.02562 * 26 25 24 28 28 N 1.31858 * 120.76182 * 359.97438 * 27 26 25 29 29 C 1.31879 * 121.72819 * 359.71111 * 28 27 26 30 30 H 1.09000 * 109.47748 * 59.99308 * 1 2 3 31 31 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47046 * 299.99552 * 1 2 3 33 33 H 1.08994 * 109.46864 * 240.00589 * 2 1 3 34 34 H 1.09002 * 109.47024 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47859 * 300.00684 * 3 2 1 36 36 H 1.09007 * 109.46837 * 60.00320 * 3 2 1 37 37 H 1.09002 * 110.48898 * 102.42432 * 7 5 4 38 38 H 1.08998 * 110.48664 * 224.93465 * 7 5 4 39 39 H 1.08999 * 110.96769 * 142.98225 * 8 7 5 40 40 H 1.08994 * 110.97256 * 266.74527 * 8 7 5 41 41 H 1.08995 * 109.47605 * 210.00419 * 14 13 11 42 42 H 1.09000 * 109.47105 * 330.01009 * 14 13 11 43 43 H 0.96994 * 120.00317 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46997 * 209.99474 * 23 13 11 45 45 H 1.08993 * 109.47071 * 329.99387 * 23 13 11 46 46 H 1.08000 * 120.79257 * 0.02562 * 25 24 23 47 47 H 1.08000 * 120.41834 * 179.97438 * 26 25 24 48 48 H 1.08004 * 119.61901 * 180.02562 * 27 26 25 49 49 H 1.07997 * 119.61898 * 180.30612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.7484 -0.3082 2.4561 6 8 1.0766 0.6545 2.7611 7 6 2.4038 -1.2536 3.4386 8 6 2.7594 -2.4980 2.5924 9 6 2.8647 -1.8894 1.1726 10 1 3.8975 -1.6178 0.9541 11 6 2.3551 -2.8675 0.1455 12 8 1.3732 -2.5983 -0.5135 13 7 2.9900 -4.0418 -0.0398 14 6 4.1757 -4.3673 0.7565 15 6 3.7550 -5.0818 2.0150 16 1 2.7090 -5.2745 2.2025 17 6 4.7053 -5.4894 2.9269 18 7 4.3382 -6.1134 4.0249 19 14 6.5145 -5.1554 2.6028 20 1 6.8857 -3.8381 3.1791 21 1 7.3350 -6.2205 3.2334 22 1 6.7609 -5.1423 1.1385 23 6 2.4943 -4.9929 -1.0379 24 6 3.1516 -4.7161 -2.3655 25 6 4.3418 -5.3421 -2.7037 26 6 4.9101 -5.0576 -3.9357 27 6 4.2761 -4.1653 -4.7799 28 7 3.1448 -3.5885 -4.4249 29 6 2.5726 -3.8400 -3.2636 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 3.3056 -0.8055 3.8558 38 1 1.7079 -1.5196 4.2342 39 1 3.7116 -2.9248 2.9075 40 1 1.9649 -3.2426 2.6405 41 1 4.8372 -5.0112 0.1770 42 1 4.7008 -3.4488 1.0186 43 1 5.0069 -6.4004 4.6662 44 1 2.7301 -6.0086 -0.7204 45 1 1.4143 -4.8850 -1.1376 46 1 4.8145 -6.0355 -2.0238 47 1 5.8368 -5.5266 -4.2318 48 1 4.7121 -3.9386 -5.7417 49 1 1.6432 -3.3520 -3.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874232606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:31 Heat of formation + Delta-G solvation = -25.382835 kcal Electronic energy + Delta-G solvation = -32233.784714 eV Core-core repulsion = 28161.148730 eV Total energy + Delta-G solvation = -4072.635984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81171 -40.07389 -38.73176 -36.01737 -35.58406 -34.59151 -33.12080 -32.30403 -31.58666 -29.68529 -28.52353 -28.02896 -26.89813 -25.78950 -23.53026 -22.67633 -22.46724 -22.09064 -21.66168 -19.18086 -18.16357 -17.48269 -16.94410 -16.89702 -16.50351 -16.04743 -15.69912 -15.38479 -15.25211 -14.60628 -14.52297 -14.22284 -13.77778 -13.68155 -13.48150 -13.31675 -13.21401 -13.02379 -12.98499 -12.70848 -12.63011 -12.33843 -12.14761 -11.81009 -11.72346 -11.62631 -11.50530 -11.29176 -11.07395 -10.92711 -10.89702 -10.73644 -10.62799 -10.44379 -9.84843 -9.72188 -9.53556 -9.39349 -9.19210 -8.94246 -8.87751 -8.33641 -8.04617 -6.38609 -4.40039 1.13702 1.34793 2.86089 3.01626 3.03050 3.10492 3.13455 3.18136 3.60042 4.01079 4.09590 4.51334 4.66215 4.78743 4.88219 4.92158 4.98858 5.04649 5.10788 5.13871 5.25779 5.33319 5.38679 5.40827 5.49120 5.57347 5.73567 5.75387 5.83904 5.90456 5.95172 6.00611 6.02769 6.10739 6.14196 6.18544 6.19714 6.38317 6.39918 6.43503 6.53322 6.61797 6.77784 6.78612 6.92745 7.03019 7.22806 7.45201 7.84072 8.03479 8.18573 8.48499 8.60412 8.68349 9.18493 10.72761 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007204 B = 0.006095 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3885.783972 B = 4592.880575 C = 7628.812722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.161 3.839 3 C -0.168 4.168 4 N -0.593 5.593 5 C 0.521 3.479 6 O -0.540 6.540 7 C -0.162 4.162 8 C -0.102 4.102 9 C 0.116 3.884 10 H 0.096 0.904 11 C 0.515 3.485 12 O -0.550 6.550 13 N -0.581 5.581 14 C 0.205 3.795 15 C -0.541 4.541 16 H 0.084 0.916 17 C 0.081 3.919 18 N -0.882 5.882 19 Si 0.861 3.139 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.162 3.838 24 C -0.147 4.147 25 C -0.061 4.061 26 C -0.179 4.179 27 C 0.090 3.910 28 N -0.491 5.491 29 C 0.118 3.882 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.268 0.732 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.136 0.864 47 H 0.131 0.869 48 H 0.150 0.850 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 4.038 -9.887 10.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.059 3.941 3 C -0.226 4.226 4 N -0.327 5.327 5 C 0.310 3.690 6 O -0.418 6.418 7 C -0.202 4.202 8 C -0.140 4.140 9 C 0.009 3.991 10 H 0.114 0.886 11 C 0.302 3.698 12 O -0.429 6.429 13 N -0.311 5.311 14 C 0.084 3.916 15 C -0.579 4.579 16 H 0.102 0.898 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.688 3.312 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.190 1.190 23 C 0.038 3.962 24 C -0.151 4.151 25 C -0.088 4.088 26 C -0.199 4.199 27 C -0.067 4.067 28 N -0.199 5.199 29 C -0.039 4.039 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.107 0.893 46 H 0.154 0.846 47 H 0.149 0.851 48 H 0.168 0.832 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.637 5.213 -10.526 11.764 hybrid contribution 1.796 -0.758 0.514 2.016 sum 2.433 4.454 -10.013 11.226 Atomic orbital electron populations 1.22053 0.94763 1.02985 1.01615 1.20853 0.94802 0.91432 0.86986 1.22234 1.00845 0.96741 1.02796 1.48201 1.50651 1.27448 1.06405 1.20938 0.79397 0.84885 0.83781 1.90641 1.40168 1.29431 1.81570 1.22491 1.02506 0.96446 0.98719 1.22931 1.06954 0.95405 0.88714 1.21673 0.94635 0.85102 0.97699 0.88628 1.20493 0.83387 0.82611 0.83263 1.90606 1.26530 1.76824 1.48923 1.47885 1.30267 1.16320 1.36628 1.19936 0.83220 0.96679 0.91747 1.21305 0.96330 1.38134 1.02127 0.89830 1.24811 0.98326 0.94426 0.94810 1.69864 1.34383 1.37845 1.09766 0.87085 0.86006 0.78935 0.79205 1.19652 1.20801 1.18978 1.20161 0.98784 0.93918 0.83307 1.21439 0.96786 0.98612 0.98224 1.21626 0.93945 0.97390 0.95837 1.22112 1.01623 1.00619 0.95504 1.22726 0.91562 0.93081 0.99300 1.67724 1.10391 1.23690 1.18112 1.22863 0.99138 0.93552 0.88377 0.92542 0.91315 0.92086 0.89008 0.93002 0.91881 0.91256 0.88187 0.88169 0.86055 0.89029 0.94764 0.95314 0.92142 0.88795 0.89278 0.84634 0.85071 0.83239 0.82367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.03 37.16 0.34 -2.09 16 2 C 0.16 2.50 2.38 -67.94 -0.16 2.33 16 3 C -0.17 -2.32 9.20 37.16 0.34 -1.98 16 4 N -0.59 -9.70 2.58 -158.46 -0.41 -10.11 16 5 C 0.52 8.99 7.41 -10.86 -0.08 8.91 16 6 O -0.54 -10.59 15.12 5.55 0.08 -10.51 16 7 C -0.16 -2.44 6.85 -26.74 -0.18 -2.63 16 8 C -0.10 -1.69 4.55 -24.91 -0.11 -1.80 16 9 C 0.12 1.87 2.79 -67.97 -0.19 1.68 16 10 H 0.10 1.43 7.33 -51.93 -0.38 1.05 16 11 C 0.52 8.88 6.74 -10.98 -0.07 8.81 16 12 O -0.55 -10.01 12.10 5.56 0.07 -9.94 16 13 N -0.58 -9.80 2.44 -176.43 -0.43 -10.23 16 14 C 0.21 3.74 3.77 -5.19 -0.02 3.72 16 15 C -0.54 -11.73 6.71 -34.44 -0.23 -11.96 16 16 H 0.08 2.06 7.60 -52.48 -0.40 1.66 16 17 C 0.08 1.88 5.34 -17.82 -0.10 1.78 16 18 N -0.88 -22.62 13.96 55.43 0.77 -21.84 16 19 Si 0.86 17.37 27.47 -169.99 -4.67 12.70 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.06 6.54 56.52 0.37 -4.69 16 23 C 0.16 2.45 5.56 -5.19 -0.03 2.42 16 24 C -0.15 -2.09 5.48 -104.48 -0.57 -2.66 16 25 C -0.06 -0.79 9.86 -39.28 -0.39 -1.18 16 26 C -0.18 -2.02 10.11 -39.44 -0.40 -2.42 16 27 C 0.09 1.09 11.18 -17.54 -0.20 0.90 16 28 N -0.49 -7.18 10.36 -13.25 -0.14 -7.32 16 29 C 0.12 1.74 10.86 -17.55 -0.19 1.55 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.18 7.04 -51.93 -0.37 0.81 16 32 H 0.06 1.02 6.80 -51.92 -0.35 0.67 16 33 H 0.09 1.47 6.56 -51.93 -0.34 1.13 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.07 6.77 -51.92 -0.35 0.72 16 37 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.12 2.14 6.01 -51.93 -0.31 1.83 16 40 H 0.09 1.69 7.21 -51.93 -0.37 1.32 16 41 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 42 H 0.03 0.51 5.40 -51.93 -0.28 0.23 16 43 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 44 H 0.09 1.38 8.03 -51.93 -0.42 0.97 16 45 H 0.09 1.36 7.37 -51.93 -0.38 0.98 16 46 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 47 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 48 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16 49 H 0.16 2.38 7.64 -52.49 -0.40 1.98 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -27.30 386.68 -8.42 -35.71 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.28 Total: 10.33 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -2.25 Total: 5.39 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.20 Total: -49.50 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.15 Total: -20.45 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -4.67 Total: 12.70 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -27.30 -8.42 -35.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.332 kcal (2) G-P(sol) polarization free energy of solvation -27.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds