Wall clock time and date at job start Wed Apr 1 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 N 1.46493 * 109.47212 * 120.00429 * 2 1 3 5 5 C 1.34418 * 124.35106 * 299.97514 * 4 2 1 6 6 O 1.21288 * 124.94305 * 359.60727 * 5 4 2 7 7 C 1.51281 * 110.11952 * 179.57371 * 5 4 2 8 8 C 1.54631 * 104.31067 * 343.67722 * 7 5 4 9 9 C 1.46765 * 124.35316 * 119.95210 * 4 2 1 10 10 H 1.09002 * 110.24650 * 78.03034 * 9 4 2 11 11 C 1.50707 * 110.24051 * 316.12636 * 9 4 2 12 12 O 1.21280 * 120.00051 * 359.97438 * 11 9 4 13 13 N 1.34774 * 119.99581 * 180.02562 * 11 9 4 14 14 C 1.46498 * 120.00586 * 359.97438 * 13 11 9 15 15 C 1.50701 * 109.46964 * 90.00139 * 14 13 11 16 16 H 1.08003 * 119.99910 * 0.02562 * 15 14 13 17 17 C 1.37870 * 120.00222 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00626 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99844 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47122 * 90.00334 * 19 17 15 21 21 H 1.48500 * 109.46787 * 209.99951 * 19 17 15 22 22 H 1.48492 * 109.46999 * 329.99949 * 19 17 15 23 23 C 1.46503 * 119.99697 * 179.97438 * 13 11 9 24 24 C 1.50706 * 109.47071 * 89.99854 * 23 13 11 25 25 C 1.38667 * 120.41873 * 90.00000 * 24 23 13 26 26 C 1.38629 * 118.42058 * 179.97438 * 25 24 23 27 27 C 1.38229 * 119.15962 * 0.02562 * 26 25 24 28 28 N 1.31858 * 120.76182 * 359.97438 * 27 26 25 29 29 C 1.31879 * 121.72819 * 359.71111 * 28 27 26 30 30 H 1.09000 * 109.47748 * 59.99308 * 1 2 3 31 31 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47046 * 299.99552 * 1 2 3 33 33 H 1.08994 * 109.46864 * 240.00589 * 2 1 3 34 34 H 1.09002 * 109.47024 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47859 * 300.00684 * 3 2 1 36 36 H 1.09007 * 109.46837 * 60.00320 * 3 2 1 37 37 H 1.09002 * 110.48898 * 102.42432 * 7 5 4 38 38 H 1.08998 * 110.48664 * 224.93465 * 7 5 4 39 39 H 1.08999 * 110.96769 * 142.98225 * 8 7 5 40 40 H 1.08994 * 110.97256 * 266.74527 * 8 7 5 41 41 H 1.08995 * 109.47605 * 210.00419 * 14 13 11 42 42 H 1.09000 * 109.47105 * 330.01009 * 14 13 11 43 43 H 0.96994 * 120.00317 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46997 * 209.99474 * 23 13 11 45 45 H 1.08993 * 109.47071 * 329.99387 * 23 13 11 46 46 H 1.08000 * 120.79257 * 0.02562 * 25 24 23 47 47 H 1.08000 * 120.41834 * 179.97438 * 26 25 24 48 48 H 1.08004 * 119.61901 * 180.02562 * 27 26 25 49 49 H 1.07997 * 119.61898 * 180.30612 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 1.7484 -0.3082 2.4561 6 8 1.0766 0.6545 2.7611 7 6 2.4038 -1.2536 3.4386 8 6 2.7594 -2.4980 2.5924 9 6 2.8647 -1.8894 1.1726 10 1 3.8975 -1.6178 0.9541 11 6 2.3551 -2.8675 0.1455 12 8 1.3732 -2.5983 -0.5135 13 7 2.9900 -4.0418 -0.0398 14 6 4.1757 -4.3673 0.7565 15 6 3.7550 -5.0818 2.0150 16 1 2.7090 -5.2745 2.2025 17 6 4.7053 -5.4894 2.9269 18 7 4.3382 -6.1134 4.0249 19 14 6.5145 -5.1554 2.6028 20 1 6.8857 -3.8381 3.1791 21 1 7.3350 -6.2205 3.2334 22 1 6.7609 -5.1423 1.1385 23 6 2.4943 -4.9929 -1.0379 24 6 3.1516 -4.7161 -2.3655 25 6 4.3418 -5.3421 -2.7037 26 6 4.9101 -5.0576 -3.9357 27 6 4.2761 -4.1653 -4.7799 28 7 3.1448 -3.5885 -4.4249 29 6 2.5726 -3.8400 -3.2636 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5137 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 3.3056 -0.8055 3.8558 38 1 1.7079 -1.5196 4.2342 39 1 3.7116 -2.9248 2.9075 40 1 1.9649 -3.2426 2.6405 41 1 4.8372 -5.0112 0.1770 42 1 4.7008 -3.4488 1.0186 43 1 5.0069 -6.4004 4.6662 44 1 2.7301 -6.0086 -0.7204 45 1 1.4143 -4.8850 -1.1376 46 1 4.8145 -6.0355 -2.0238 47 1 5.8368 -5.5266 -4.2318 48 1 4.7121 -3.9386 -5.7417 49 1 1.6432 -3.3520 -3.0097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874232606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:30 Heat of formation + Delta-G solvation = -39.959617 kcal Electronic energy + Delta-G solvation = -32234.416810 eV Core-core repulsion = 28161.148730 eV Total energy + Delta-G solvation = -4073.268081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15001 -41.14648 -40.06793 -37.39187 -37.02356 -35.84408 -34.68266 -33.55363 -32.65523 -30.98515 -29.91763 -29.49622 -28.09528 -27.02759 -24.68265 -24.16019 -23.69233 -23.34898 -22.85950 -20.54229 -19.52187 -19.05796 -18.35162 -17.94403 -17.82479 -17.17578 -17.03804 -16.68103 -16.49815 -16.02524 -15.88783 -15.54606 -15.01408 -14.94205 -14.71278 -14.59382 -14.50382 -14.34148 -14.20888 -14.03804 -13.89875 -13.63037 -13.42831 -13.15766 -12.99253 -12.92749 -12.78754 -12.60763 -12.41047 -12.38935 -12.18115 -12.06561 -12.02795 -11.89998 -11.52332 -10.98929 -10.75061 -10.65459 -10.52991 -10.42543 -9.99268 -9.66295 -9.45353 -8.17851 -6.21923 0.13875 0.35686 1.46011 1.49042 1.51191 1.56453 1.64323 1.86702 2.32058 2.42165 2.95393 3.15455 3.34222 3.45928 3.56530 3.72168 3.90894 3.93684 3.98018 4.06518 4.08761 4.12320 4.14135 4.18275 4.35271 4.48475 4.52814 4.69827 4.70961 4.71194 4.74029 4.79544 4.81979 4.89700 4.90287 4.92005 4.95655 5.14522 5.18480 5.22774 5.33689 5.36166 5.37065 5.51365 5.63870 5.64504 5.80822 6.11860 6.26273 6.57773 6.82841 7.03907 7.12007 7.24038 7.40944 8.96770 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007204 B = 0.006095 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3885.783972 B = 4592.880575 C = 7628.812722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 C -0.158 4.158 4 N -0.592 5.592 5 C 0.517 3.483 6 O -0.567 6.567 7 C -0.153 4.153 8 C -0.092 4.092 9 C 0.117 3.883 10 H 0.118 0.882 11 C 0.511 3.489 12 O -0.562 6.562 13 N -0.582 5.582 14 C 0.212 3.788 15 C -0.520 4.520 16 H 0.043 0.957 17 C 0.033 3.967 18 N -0.935 5.935 19 Si 0.916 3.084 20 H -0.261 1.261 21 H -0.296 1.296 22 H -0.239 1.239 23 C 0.164 3.836 24 C -0.155 4.155 25 C -0.068 4.068 26 C -0.167 4.167 27 C 0.088 3.912 28 N -0.514 5.514 29 C 0.105 3.895 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.265 0.735 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.147 0.853 47 H 0.167 0.833 48 H 0.182 0.818 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 4.782 -11.977 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.216 4.216 4 N -0.325 5.325 5 C 0.306 3.694 6 O -0.447 6.447 7 C -0.193 4.193 8 C -0.130 4.130 9 C 0.010 3.990 10 H 0.135 0.865 11 C 0.298 3.702 12 O -0.442 6.442 13 N -0.311 5.311 14 C 0.090 3.910 15 C -0.559 4.559 16 H 0.061 0.939 17 C -0.167 4.167 18 N -0.574 5.574 19 Si 0.741 3.259 20 H -0.186 1.186 21 H -0.223 1.223 22 H -0.162 1.162 23 C 0.041 3.959 24 C -0.158 4.158 25 C -0.094 4.094 26 C -0.186 4.186 27 C -0.069 4.069 28 N -0.223 5.223 29 C -0.051 4.051 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.165 0.835 47 H 0.184 0.816 48 H 0.199 0.801 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.307 5.959 -12.659 14.377 hybrid contribution 0.871 -1.046 1.078 1.736 sum 4.179 4.914 -11.581 13.256 Atomic orbital electron populations 1.21958 0.95072 1.01588 1.01903 1.20973 0.94583 0.92489 0.86461 1.22144 1.01298 0.95188 1.02980 1.48297 1.50366 1.27276 1.06568 1.21225 0.79099 0.84755 0.84321 1.90628 1.41379 1.30673 1.81991 1.22494 1.03506 0.95177 0.98139 1.22684 1.05410 0.95350 0.89596 1.21737 0.95590 0.84801 0.96857 0.86487 1.20719 0.83253 0.82905 0.83311 1.90608 1.26999 1.77132 1.49464 1.47882 1.29976 1.16483 1.36784 1.19807 0.83797 0.97064 0.90338 1.21327 0.94274 1.37077 1.03218 0.93914 1.25481 1.02440 0.94334 0.94398 1.70021 1.35666 1.40405 1.11345 0.86185 0.80686 0.78609 0.80467 1.18571 1.22290 1.16202 1.20153 0.98428 0.93516 0.83813 1.21239 0.97671 0.99459 0.97402 1.21844 0.93380 0.97308 0.96882 1.22471 1.02328 0.99553 0.94283 1.23319 0.90612 0.92437 1.00577 1.67715 1.11783 1.24761 1.18036 1.22668 0.99144 0.94270 0.89059 0.90357 0.93463 0.93608 0.89316 0.92147 0.89737 0.92957 0.85674 0.87819 0.86803 0.91799 0.93488 0.93646 0.92538 0.88687 0.90274 0.83540 0.81566 0.80122 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.03 71.98 0.65 -3.92 16 2 C 0.16 4.72 2.38 44.99 0.11 4.82 16 3 C -0.16 -4.09 9.20 71.98 0.66 -3.43 16 4 N -0.59 -18.99 2.58 -773.85 -2.00 -20.99 16 5 C 0.52 17.60 7.41 87.90 0.65 18.25 16 6 O -0.57 -22.20 15.12 -3.05 -0.05 -22.25 16 7 C -0.15 -4.53 6.85 30.59 0.21 -4.32 16 8 C -0.09 -3.04 4.55 31.77 0.14 -2.89 16 9 C 0.12 3.67 2.79 44.82 0.13 3.79 16 10 H 0.12 3.20 7.33 -2.39 -0.02 3.19 16 11 C 0.51 17.49 6.74 87.66 0.59 18.08 16 12 O -0.56 -20.75 12.10 -3.03 -0.04 -20.78 16 13 N -0.58 -19.31 2.44 -830.50 -2.03 -21.33 16 14 C 0.21 7.35 3.77 85.63 0.32 7.67 16 15 C -0.52 -22.63 6.71 25.60 0.17 -22.45 16 16 H 0.04 2.19 7.60 -2.91 -0.02 2.17 16 17 C 0.03 1.53 5.34 84.65 0.45 1.99 16 18 N -0.93 -49.10 13.96 21.45 0.30 -48.80 16 19 Si 0.92 34.28 27.47 68.60 1.88 36.16 16 20 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 21 H -0.30 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.24 -7.86 6.54 99.48 0.65 -7.21 16 23 C 0.16 4.95 5.56 85.63 0.48 5.42 16 24 C -0.15 -4.20 5.48 -19.77 -0.11 -4.31 16 25 C -0.07 -1.55 9.86 22.47 0.22 -1.32 16 26 C -0.17 -3.12 10.11 22.36 0.23 -2.90 16 27 C 0.09 1.83 11.18 84.69 0.95 2.78 16 28 N -0.51 -14.23 10.36 -195.84 -2.03 -16.25 16 29 C 0.11 3.05 10.86 84.67 0.92 3.97 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.65 7.04 -2.39 -0.02 1.63 16 32 H 0.04 1.55 6.80 -2.38 -0.02 1.53 16 33 H 0.09 2.76 6.56 -2.39 -0.02 2.74 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.55 6.77 -2.38 -0.02 1.53 16 37 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.11 3.94 6.01 -2.39 -0.01 3.93 16 40 H 0.06 2.45 7.21 -2.39 -0.02 2.44 16 41 H 0.05 1.56 7.13 -2.39 -0.02 1.55 16 42 H 0.05 1.47 5.40 -2.39 -0.01 1.46 16 43 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 44 H 0.09 2.79 8.03 -2.39 -0.02 2.77 16 45 H 0.08 2.51 7.37 -2.39 -0.02 2.49 16 46 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 49 H 0.14 4.45 7.64 -2.91 -0.02 4.43 16 Total: -1.00 -60.54 386.68 3.72 -56.82 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.90 Total: 36.19 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.77 Total: 21.23 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -5.75 Total: -107.37 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.08 Total: -43.03 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 1.88 Total: 36.16 kcal Total: -60.54 3.72 -56.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874232606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.865 kcal (2) G-P(sol) polarization free energy of solvation -60.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds