Wall clock time and date at job start Wed Apr 1 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 N 1.46499 * 109.47292 * 120.00544 * 2 1 3 5 5 C 1.34423 * 124.34925 * 299.97344 * 4 2 1 6 6 O 1.21285 * 124.93736 * 0.45435 * 5 4 2 7 7 C 1.51278 * 110.11468 * 180.42778 * 5 4 2 8 8 C 1.54853 * 104.21217 * 16.26803 * 7 5 4 9 9 C 1.46764 * 124.35057 * 119.99620 * 4 2 1 10 10 H 1.08994 * 110.24497 * 43.87727 * 9 4 2 11 11 C 1.50698 * 110.24708 * 281.96351 * 9 4 2 12 12 O 1.21282 * 119.99746 * 352.17729 * 11 9 4 13 13 N 1.34774 * 119.99949 * 172.18121 * 11 9 4 14 14 C 1.46497 * 120.00277 * 4.50934 * 13 11 9 15 15 C 1.50702 * 109.47158 * 276.40373 * 14 13 11 16 16 H 1.07998 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99938 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00251 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47178 * 59.99436 * 19 17 15 21 21 H 1.48493 * 109.47411 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46625 * 299.99712 * 19 17 15 23 23 C 1.46505 * 119.99790 * 184.51303 * 13 11 9 24 24 C 1.50701 * 109.47031 * 269.99782 * 23 13 11 25 25 C 1.38220 * 119.61840 * 95.00529 * 24 23 13 26 26 C 1.38628 * 119.16307 * 179.97438 * 25 24 23 27 27 C 1.38677 * 118.41566 * 359.97438 * 26 25 24 28 28 C 1.38175 * 119.16672 * 359.97438 * 27 26 25 29 29 N 1.31858 * 119.61277 * 274.72515 * 24 23 13 30 30 H 1.08996 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47129 * 299.99846 * 1 2 3 32 32 H 1.08997 * 109.47295 * 59.99472 * 1 2 3 33 33 H 1.09002 * 109.47129 * 240.00154 * 2 1 3 34 34 H 1.08996 * 109.47836 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47291 * 300.00531 * 3 2 1 36 36 H 1.09002 * 109.46816 * 59.99963 * 3 2 1 37 37 H 1.09000 * 110.48062 * 134.93483 * 7 5 4 38 38 H 1.09000 * 110.48480 * 257.43972 * 7 5 4 39 39 H 1.09004 * 111.03940 * 217.10082 * 8 7 5 40 40 H 1.08991 * 110.99784 * 93.26456 * 8 7 5 41 41 H 1.09003 * 109.46797 * 36.39999 * 14 13 11 42 42 H 1.09000 * 109.47423 * 156.39909 * 14 13 11 43 43 H 0.96994 * 119.99889 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.46842 * 149.99579 * 23 13 11 45 45 H 1.09000 * 109.47009 * 29.99961 * 23 13 11 46 46 H 1.07999 * 120.42249 * 359.97438 * 25 24 23 47 47 H 1.07998 * 120.79098 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.41412 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.61858 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7484 -0.3082 2.4562 6 8 1.0647 0.6460 2.7610 7 6 2.4211 -1.2415 3.4385 8 6 3.4747 -1.9932 2.5884 9 6 2.8655 -1.8889 1.1725 10 1 3.6552 -1.7780 0.4295 11 6 2.0345 -3.1094 0.8711 12 8 0.8253 -3.0247 0.8307 13 7 2.6350 -4.2949 0.6466 14 6 4.0873 -4.4196 0.7924 15 6 4.7604 -3.9676 -0.4780 16 1 4.1657 -3.6224 -1.3108 17 6 6.1352 -3.9958 -0.5773 18 7 6.8594 -4.4167 0.4367 19 14 6.9696 -3.4363 -2.1522 20 1 6.6194 -2.0184 -2.4211 21 1 8.4417 -3.5626 -2.0044 22 1 6.5107 -4.2825 -3.2830 23 6 1.8353 -5.4588 0.2566 24 6 1.3941 -6.2017 1.4913 25 6 0.1513 -5.9417 2.0374 26 6 -0.2451 -6.6310 3.1730 27 6 0.6272 -7.5605 3.7190 28 6 1.8536 -7.7678 3.1171 29 7 2.1961 -7.0961 2.0349 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.9065 -0.6740 4.2326 38 1 1.6972 -1.9401 3.8579 39 1 3.5593 -3.0341 2.9009 40 1 4.4423 -1.4937 2.6345 41 1 4.4238 -3.7986 1.6226 42 1 4.3447 -5.4603 0.9895 43 1 7.8266 -4.4362 0.3668 44 1 2.4357 -6.1188 -0.3696 45 1 0.9590 -5.1274 -0.3006 46 1 -0.5028 -5.2109 1.5852 47 1 -1.2103 -6.4483 3.6218 48 1 0.3515 -8.1154 4.6036 49 1 2.5384 -8.4903 3.5359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874358100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:27 Heat of formation + Delta-G solvation = -28.693090 kcal Electronic energy + Delta-G solvation = -32134.821459 eV Core-core repulsion = 28062.041932 eV Total energy + Delta-G solvation = -4072.779527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76644 -39.97818 -38.54484 -35.93459 -35.22617 -34.69475 -32.90711 -32.23318 -31.50905 -29.77539 -28.34396 -27.38552 -26.91709 -25.79336 -23.48609 -23.17760 -22.39777 -22.06878 -21.62588 -19.20868 -18.28857 -17.07216 -16.73675 -16.48919 -16.30050 -15.94496 -15.57199 -15.29702 -15.05022 -14.86139 -14.42865 -14.17041 -13.89919 -13.58533 -13.48968 -13.20437 -13.08176 -13.04984 -12.78021 -12.65255 -12.52017 -12.30743 -11.85568 -11.76177 -11.62726 -11.52461 -11.27066 -11.19220 -11.09476 -10.99726 -10.93360 -10.77369 -10.69145 -10.22895 -9.87479 -9.70467 -9.47711 -9.28603 -9.20757 -8.87301 -8.60827 -8.25153 -7.88449 -6.23999 -4.32174 1.24683 1.46230 2.88194 3.13699 3.18576 3.19675 3.25938 3.28488 3.73881 4.19418 4.28375 4.52965 4.60275 4.79674 4.93112 4.98907 5.04381 5.12226 5.14691 5.21241 5.27145 5.33203 5.34069 5.46033 5.52097 5.72774 5.78665 5.80250 5.83244 5.88725 5.96097 5.99638 6.05282 6.13144 6.14520 6.16550 6.22923 6.30909 6.34976 6.36968 6.56558 6.69028 6.86990 6.91682 7.14901 7.40618 7.48236 7.70093 7.98569 8.15187 8.26663 8.49977 8.69724 8.85262 9.35593 10.82377 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006784 B = 0.005935 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4126.153261 B = 4716.285256 C = 7587.130391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 C -0.165 4.165 4 N -0.587 5.587 5 C 0.527 3.473 6 O -0.542 6.542 7 C -0.158 4.158 8 C -0.115 4.115 9 C 0.116 3.884 10 H 0.130 0.870 11 C 0.508 3.492 12 O -0.558 6.558 13 N -0.583 5.583 14 C 0.229 3.771 15 C -0.544 4.544 16 H 0.060 0.940 17 C 0.070 3.930 18 N -0.885 5.885 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.169 3.831 24 C 0.119 3.881 25 C -0.150 4.150 26 C -0.084 4.084 27 C -0.181 4.181 28 C 0.095 3.905 29 N -0.464 5.464 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.266 0.734 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.137 0.863 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -0.308 4.018 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 C -0.223 4.223 4 N -0.320 5.320 5 C 0.315 3.685 6 O -0.420 6.420 7 C -0.198 4.198 8 C -0.153 4.153 9 C 0.009 3.991 10 H 0.148 0.852 11 C 0.295 3.705 12 O -0.438 6.438 13 N -0.314 5.314 14 C 0.109 3.891 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.721 3.279 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.044 3.956 24 C -0.020 4.020 25 C -0.170 4.170 26 C -0.110 4.110 27 C -0.201 4.201 28 C -0.063 4.063 29 N -0.174 5.174 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.106 0.894 46 H 0.155 0.845 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.598 0.089 3.735 9.375 hybrid contribution -0.084 0.103 -0.466 0.484 sum -8.682 0.192 3.269 9.279 Atomic orbital electron populations 1.22148 0.94689 1.03357 1.02001 1.20857 0.94682 0.92388 0.86595 1.22178 1.01337 0.96004 1.02822 1.48108 1.50932 1.26801 1.06132 1.20727 0.79623 0.84322 0.83818 1.90636 1.40050 1.29654 1.81642 1.22429 0.99541 0.99291 0.98570 1.22646 0.98480 1.02796 0.91366 1.21686 0.92629 0.83479 1.01290 0.85221 1.20753 0.88149 0.84818 0.76822 1.90580 1.14311 1.85654 1.53226 1.48192 1.10390 1.06863 1.65927 1.19717 0.72151 0.99700 0.97504 1.21416 0.91530 1.45170 1.00130 0.92181 1.24902 0.97206 0.94824 0.96490 1.69909 1.06321 1.45579 1.30460 0.86631 0.78412 0.79334 0.83553 1.20098 1.21136 1.20116 1.20159 0.96775 0.87181 0.91454 1.21843 0.90113 0.92805 0.97201 1.22120 0.97905 1.00137 0.96868 1.21555 0.99475 0.94775 0.95169 1.22092 0.96072 1.00247 1.01657 1.22756 0.94583 0.97224 0.91727 1.67597 1.33995 1.05836 1.09947 0.91067 0.91595 0.92461 0.89709 0.92434 0.91778 0.91210 0.88214 0.88343 0.88461 0.88681 0.93907 0.93273 0.92385 0.88531 0.89441 0.84474 0.85337 0.85309 0.83039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.20 37.16 0.34 -2.16 16 2 C 0.16 2.42 3.47 -67.94 -0.24 2.19 16 3 C -0.17 -2.28 9.20 37.15 0.34 -1.94 16 4 N -0.59 -9.84 2.00 -158.68 -0.32 -10.16 16 5 C 0.53 9.14 7.41 -10.86 -0.08 9.06 16 6 O -0.54 -10.60 15.12 5.55 0.08 -10.52 16 7 C -0.16 -2.31 6.86 -26.62 -0.18 -2.50 16 8 C -0.11 -1.77 5.52 -24.98 -0.14 -1.90 16 9 C 0.12 2.01 2.62 -68.16 -0.18 1.83 16 10 H 0.13 2.39 6.98 -51.93 -0.36 2.03 16 11 C 0.51 9.48 6.89 -10.99 -0.08 9.40 16 12 O -0.56 -10.98 14.85 5.56 0.08 -10.90 16 13 N -0.58 -11.12 2.46 -176.43 -0.43 -11.55 16 14 C 0.23 4.96 4.79 -5.19 -0.02 4.93 16 15 C -0.54 -12.91 8.25 -34.44 -0.28 -13.19 16 16 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -22.95 13.29 55.43 0.74 -22.21 16 19 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 20 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.17 2.95 5.65 -5.19 -0.03 2.92 16 24 C 0.12 1.98 6.36 -82.59 -0.53 1.46 16 25 C -0.15 -2.22 9.72 -39.44 -0.38 -2.60 16 26 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 27 C -0.18 -2.12 10.11 -39.44 -0.40 -2.51 16 28 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 29 N -0.46 -7.87 10.27 -9.47 -0.10 -7.97 16 30 H 0.07 1.21 7.07 -51.93 -0.37 0.84 16 31 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.07 6.80 -51.93 -0.35 0.71 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.10 1.57 6.26 -51.93 -0.33 1.25 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.94 4.70 -51.93 -0.24 0.69 16 42 H 0.05 1.19 8.02 -51.93 -0.42 0.77 16 43 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.10 1.72 8.07 -51.93 -0.42 1.31 16 45 H 0.09 1.45 7.39 -51.93 -0.38 1.06 16 46 H 0.14 2.04 7.83 -52.49 -0.41 1.63 16 47 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 48 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 49 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -28.94 398.83 -8.91 -37.85 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.40 Total: 8.79 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.55 Total: 6.26 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.11 Total: -51.89 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.17 Total: -21.42 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.94 -8.91 -37.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.154 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds