Wall clock time and date at job start Wed Apr 1 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47475 * 2 1 4 4 N 1.46499 * 109.47292 * 120.00544 * 2 1 3 5 5 C 1.34423 * 124.34925 * 299.97344 * 4 2 1 6 6 O 1.21285 * 124.93736 * 0.45435 * 5 4 2 7 7 C 1.51278 * 110.11468 * 180.42778 * 5 4 2 8 8 C 1.54853 * 104.21217 * 16.26803 * 7 5 4 9 9 C 1.46764 * 124.35057 * 119.99620 * 4 2 1 10 10 H 1.08994 * 110.24497 * 43.87727 * 9 4 2 11 11 C 1.50698 * 110.24708 * 281.96351 * 9 4 2 12 12 O 1.21282 * 119.99746 * 352.17729 * 11 9 4 13 13 N 1.34774 * 119.99949 * 172.18121 * 11 9 4 14 14 C 1.46497 * 120.00277 * 4.50934 * 13 11 9 15 15 C 1.50702 * 109.47158 * 276.40373 * 14 13 11 16 16 H 1.07998 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99938 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00205 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00251 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47178 * 59.99436 * 19 17 15 21 21 H 1.48493 * 109.47411 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46625 * 299.99712 * 19 17 15 23 23 C 1.46505 * 119.99790 * 184.51303 * 13 11 9 24 24 C 1.50701 * 109.47031 * 269.99782 * 23 13 11 25 25 C 1.38220 * 119.61840 * 95.00529 * 24 23 13 26 26 C 1.38628 * 119.16307 * 179.97438 * 25 24 23 27 27 C 1.38677 * 118.41566 * 359.97438 * 26 25 24 28 28 C 1.38175 * 119.16672 * 359.97438 * 27 26 25 29 29 N 1.31858 * 119.61277 * 274.72515 * 24 23 13 30 30 H 1.08996 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47129 * 299.99846 * 1 2 3 32 32 H 1.08997 * 109.47295 * 59.99472 * 1 2 3 33 33 H 1.09002 * 109.47129 * 240.00154 * 2 1 3 34 34 H 1.08996 * 109.47836 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47291 * 300.00531 * 3 2 1 36 36 H 1.09002 * 109.46816 * 59.99963 * 3 2 1 37 37 H 1.09000 * 110.48062 * 134.93483 * 7 5 4 38 38 H 1.09000 * 110.48480 * 257.43972 * 7 5 4 39 39 H 1.09004 * 111.03940 * 217.10082 * 8 7 5 40 40 H 1.08991 * 110.99784 * 93.26456 * 8 7 5 41 41 H 1.09003 * 109.46797 * 36.39999 * 14 13 11 42 42 H 1.09000 * 109.47423 * 156.39909 * 14 13 11 43 43 H 0.96994 * 119.99889 * 180.02562 * 18 17 15 44 44 H 1.09007 * 109.46842 * 149.99579 * 23 13 11 45 45 H 1.09000 * 109.47009 * 29.99961 * 23 13 11 46 46 H 1.07999 * 120.42249 * 359.97438 * 25 24 23 47 47 H 1.07998 * 120.79098 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.41412 * 179.97438 * 27 26 25 49 49 H 1.08002 * 119.61858 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.7484 -0.3082 2.4562 6 8 1.0647 0.6460 2.7610 7 6 2.4211 -1.2415 3.4385 8 6 3.4747 -1.9932 2.5884 9 6 2.8655 -1.8889 1.1725 10 1 3.6552 -1.7780 0.4295 11 6 2.0345 -3.1094 0.8711 12 8 0.8253 -3.0247 0.8307 13 7 2.6350 -4.2949 0.6466 14 6 4.0873 -4.4196 0.7924 15 6 4.7604 -3.9676 -0.4780 16 1 4.1657 -3.6224 -1.3108 17 6 6.1352 -3.9958 -0.5773 18 7 6.8594 -4.4167 0.4367 19 14 6.9696 -3.4363 -2.1522 20 1 6.6194 -2.0184 -2.4211 21 1 8.4417 -3.5626 -2.0044 22 1 6.5107 -4.2825 -3.2830 23 6 1.8353 -5.4588 0.2566 24 6 1.3941 -6.2017 1.4913 25 6 0.1513 -5.9417 2.0374 26 6 -0.2451 -6.6310 3.1730 27 6 0.6272 -7.5605 3.7190 28 6 1.8536 -7.7678 3.1171 29 7 2.1961 -7.0961 2.0349 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.9065 -0.6740 4.2326 38 1 1.6972 -1.9401 3.8579 39 1 3.5593 -3.0341 2.9009 40 1 4.4423 -1.4937 2.6345 41 1 4.4238 -3.7986 1.6226 42 1 4.3447 -5.4603 0.9895 43 1 7.8266 -4.4362 0.3668 44 1 2.4357 -6.1188 -0.3696 45 1 0.9590 -5.1274 -0.3006 46 1 -0.5028 -5.2109 1.5852 47 1 -1.2103 -6.4483 3.6218 48 1 0.3515 -8.1154 4.6036 49 1 2.5384 -8.4903 3.5359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874358100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:26 Heat of formation + Delta-G solvation = -43.572281 kcal Electronic energy + Delta-G solvation = -32135.466669 eV Core-core repulsion = 28062.041932 eV Total energy + Delta-G solvation = -4073.424737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14878 -41.13094 -39.97616 -37.33612 -36.80047 -35.94382 -34.65032 -33.35871 -32.80322 -31.03618 -29.69914 -29.09266 -28.09981 -27.16372 -25.10496 -24.33669 -23.72312 -23.31463 -22.90053 -20.62615 -19.65139 -18.77944 -18.01271 -17.90678 -17.66061 -17.25638 -16.87351 -16.56195 -16.45626 -16.25450 -15.97281 -15.58767 -15.17307 -14.84656 -14.71052 -14.53298 -14.39594 -14.26264 -14.12445 -14.00165 -13.86891 -13.82913 -13.32088 -13.04744 -12.99476 -12.80221 -12.70642 -12.62909 -12.46788 -12.39247 -12.37955 -12.19900 -12.04893 -11.94182 -11.64919 -10.96068 -10.78573 -10.66306 -10.51807 -10.35009 -9.99225 -9.63426 -9.46516 -8.13882 -6.27360 0.15734 0.41133 1.46141 1.48080 1.51169 1.54531 1.66966 1.86017 2.34790 2.48847 3.00911 3.16684 3.30311 3.39014 3.52168 3.65193 3.85075 3.89185 4.00652 4.04743 4.13869 4.19000 4.22471 4.28195 4.28818 4.52200 4.54007 4.61350 4.70752 4.71474 4.73584 4.79102 4.84638 4.88802 4.89840 4.92220 4.98335 5.00150 5.18577 5.26028 5.29590 5.33302 5.34982 5.61428 5.68590 5.82008 5.86056 6.11411 6.13353 6.55773 6.85559 7.13720 7.14161 7.29019 7.44772 8.91329 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006784 B = 0.005935 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4126.153261 B = 4716.285256 C = 7587.130391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 C -0.155 4.155 4 N -0.587 5.587 5 C 0.519 3.481 6 O -0.566 6.566 7 C -0.148 4.148 8 C -0.108 4.108 9 C 0.118 3.882 10 H 0.118 0.882 11 C 0.508 3.492 12 O -0.569 6.569 13 N -0.584 5.584 14 C 0.248 3.752 15 C -0.545 4.545 16 H 0.055 0.945 17 C 0.030 3.970 18 N -0.914 5.914 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.169 3.831 24 C 0.098 3.902 25 C -0.159 4.159 26 C -0.081 4.081 27 C -0.164 4.164 28 C 0.081 3.919 29 N -0.502 5.502 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.021 0.979 43 H 0.266 0.734 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.131 0.869 47 H 0.161 0.839 48 H 0.170 0.830 49 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 -0.168 4.796 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.044 3.956 3 C -0.213 4.213 4 N -0.319 5.319 5 C 0.309 3.691 6 O -0.447 6.447 7 C -0.188 4.188 8 C -0.146 4.146 9 C 0.010 3.990 10 H 0.136 0.864 11 C 0.296 3.704 12 O -0.449 6.449 13 N -0.314 5.314 14 C 0.128 3.872 15 C -0.584 4.584 16 H 0.073 0.927 17 C -0.171 4.171 18 N -0.552 5.552 19 Si 0.773 3.227 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.203 1.203 23 C 0.045 3.955 24 C -0.040 4.040 25 C -0.180 4.180 26 C -0.107 4.107 27 C -0.183 4.183 28 C -0.076 4.076 29 N -0.212 5.212 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.144 0.856 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.149 0.851 47 H 0.178 0.822 48 H 0.187 0.813 49 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -9.218 0.226 4.495 10.258 hybrid contribution 0.030 -0.030 -0.687 0.689 sum -9.188 0.196 3.808 9.948 Atomic orbital electron populations 1.22030 0.94522 1.02030 1.02453 1.21093 0.94865 0.93417 0.86267 1.22088 1.01318 0.94655 1.03223 1.48229 1.50590 1.26429 1.06619 1.21147 0.79366 0.84281 0.84351 1.90621 1.41215 1.30793 1.82021 1.22427 0.99123 0.98816 0.98412 1.22607 0.99225 1.02556 0.90257 1.21619 0.92154 0.83085 1.02098 0.86389 1.20971 0.88127 0.84950 0.76390 1.90574 1.14775 1.85803 1.53749 1.48109 1.09511 1.07731 1.66068 1.19307 0.73528 0.97661 0.96729 1.21608 0.91709 1.44467 1.00575 0.92675 1.25513 0.97808 0.95003 0.98811 1.70000 1.06431 1.46803 1.32001 0.85783 0.77353 0.79177 0.80417 1.19257 1.21150 1.20283 1.20146 0.96264 0.86632 0.92428 1.21582 0.91178 0.93843 0.97420 1.22109 0.97164 1.00675 0.98011 1.21951 1.00823 0.93900 0.93984 1.22497 0.94603 0.99231 1.02017 1.23260 0.96096 0.97217 0.91014 1.67514 1.35111 1.06871 1.11744 0.93163 0.93258 0.89799 0.89557 0.92305 0.89299 0.92798 0.85635 0.88019 0.89310 0.87497 0.93863 0.96108 0.92445 0.89934 0.89111 0.85149 0.82162 0.81265 0.80843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 9.20 71.98 0.66 -3.91 16 2 C 0.15 4.40 3.47 44.99 0.16 4.55 16 3 C -0.15 -4.07 9.20 71.98 0.66 -3.41 16 4 N -0.59 -19.49 2.00 -774.53 -1.55 -21.04 16 5 C 0.52 17.70 7.41 87.90 0.65 18.35 16 6 O -0.57 -21.94 15.12 -3.04 -0.05 -21.99 16 7 C -0.15 -4.14 6.86 30.66 0.21 -3.93 16 8 C -0.11 -3.27 5.52 31.73 0.18 -3.10 16 9 C 0.12 4.07 2.62 44.70 0.12 4.19 16 10 H 0.12 4.38 6.98 -2.39 -0.02 4.36 16 11 C 0.51 19.23 6.89 87.66 0.60 19.83 16 12 O -0.57 -22.66 14.85 -3.04 -0.05 -22.70 16 13 N -0.58 -22.89 2.46 -830.48 -2.04 -24.93 16 14 C 0.25 11.06 4.79 85.63 0.41 11.47 16 15 C -0.55 -26.24 8.25 25.60 0.21 -26.03 16 16 H 0.06 2.67 7.81 -2.91 -0.02 2.64 16 17 C 0.03 1.48 5.46 84.65 0.46 1.94 16 18 N -0.91 -47.79 13.29 21.45 0.28 -47.50 16 19 Si 0.95 39.70 29.54 68.60 2.03 41.73 16 20 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 23 C 0.17 6.16 5.65 85.63 0.48 6.65 16 24 C 0.10 3.31 6.36 42.55 0.27 3.58 16 25 C -0.16 -4.63 9.72 22.36 0.22 -4.42 16 26 C -0.08 -1.80 10.18 22.47 0.23 -1.58 16 27 C -0.16 -3.34 10.11 22.36 0.23 -3.11 16 28 C 0.08 2.11 11.18 84.67 0.95 3.05 16 29 N -0.50 -17.19 10.27 -183.89 -1.89 -19.08 16 30 H 0.05 1.70 7.07 -2.39 -0.02 1.69 16 31 H 0.05 1.64 6.77 -2.39 -0.02 1.62 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 2.57 8.07 -2.39 -0.02 2.55 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.60 6.80 -2.39 -0.02 1.58 16 37 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.09 2.86 6.26 -2.38 -0.01 2.84 16 40 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.04 1.93 4.70 -2.39 -0.01 1.92 16 42 H 0.02 1.05 8.02 -2.39 -0.02 1.03 16 43 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 44 H 0.08 3.14 8.07 -2.38 -0.02 3.13 16 45 H 0.09 3.15 7.39 -2.39 -0.02 3.13 16 46 H 0.13 3.90 7.83 -2.91 -0.02 3.88 16 47 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 48 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 49 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -63.08 398.83 4.38 -58.70 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.95 Total: 32.67 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 6.69 Total: 24.14 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -5.20 Total: -112.56 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.09 Total: -44.69 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -63.08 4.38 -58.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874358100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.130 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds