Wall clock time and date at job start Wed Apr 1 2020 03:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 N 1.46507 * 109.47369 * 184.99295 * 3 2 1 5 5 C 1.36036 * 126.34405 * 95.03864 * 4 3 2 6 6 C 1.50695 * 124.95366 * 0.02562 * 5 4 3 7 7 N 1.46495 * 109.47259 * 94.96466 * 6 5 4 8 8 C 1.36945 * 119.99842 * 84.39372 * 7 6 5 9 9 H 1.08001 * 119.99695 * 173.81876 * 8 7 6 10 10 C 1.38807 * 119.99735 * 354.09006 * 8 7 6 11 11 N 1.31619 * 120.00216 * 4.90368 * 10 8 7 12 12 Si 1.86800 * 119.99815 * 184.90723 * 10 8 7 13 13 H 1.48504 * 109.47342 * 65.00119 * 12 10 8 14 14 H 1.48503 * 109.47391 * 184.99765 * 12 10 8 15 15 H 1.48497 * 109.47217 * 305.00179 * 12 10 8 16 16 C 1.46494 * 120.00344 * 264.38659 * 7 6 5 17 17 C 1.52993 * 109.47596 * 275.02414 * 16 7 6 18 18 C 1.50703 * 109.47273 * 179.97438 * 17 16 7 19 19 O 1.20826 * 120.00090 * 0.02562 * 18 17 16 20 20 O 1.34235 * 119.99798 * 180.02562 * 18 17 16 21 21 C 1.45199 * 116.99524 * 180.02562 * 20 18 17 22 22 N 1.30115 * 110.09758 * 179.74194 * 5 4 3 23 23 C 1.35783 * 109.64179 * 0.22611 * 22 5 4 24 24 C 1.39741 * 133.60635 * 179.97438 * 23 22 5 25 25 C 1.36604 * 119.88888 * 179.97438 * 24 23 22 26 26 C 1.38774 * 120.66940 * 359.97438 * 25 24 23 27 27 C 1.37852 * 120.45225 * 0.03870 * 26 25 24 28 28 C 1.38046 * 126.35047 * 275.16527 * 4 3 2 29 29 H 1.08993 * 109.47134 * 304.99339 * 1 2 3 30 30 H 1.08992 * 109.46921 * 64.99948 * 1 2 3 31 31 H 1.09003 * 109.46651 * 184.99394 * 1 2 3 32 32 H 1.09004 * 109.47494 * 240.00359 * 2 1 3 33 33 H 1.08998 * 109.47546 * 119.99964 * 2 1 3 34 34 H 1.09007 * 109.47158 * 64.99533 * 3 2 1 35 35 H 1.09002 * 109.47654 * 304.99663 * 3 2 1 36 36 H 1.09007 * 109.46854 * 334.96782 * 6 5 4 37 37 H 1.09003 * 109.47269 * 214.97032 * 6 5 4 38 38 H 0.97005 * 120.00065 * 184.99427 * 11 10 8 39 39 H 1.09006 * 109.47026 * 35.02580 * 16 7 6 40 40 H 1.08999 * 109.47435 * 155.01877 * 16 7 6 41 41 H 1.08998 * 109.47353 * 300.00155 * 17 16 7 42 42 H 1.09005 * 109.47193 * 59.99761 * 17 16 7 43 43 H 1.08999 * 109.46692 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.47138 * 299.99490 * 21 20 18 45 45 H 1.08996 * 109.47496 * 59.99975 * 21 20 18 46 46 H 1.07998 * 120.05749 * 359.97438 * 24 23 22 47 47 H 1.07996 * 119.66537 * 179.97438 * 25 24 23 48 48 H 1.08009 * 119.77287 * 180.02562 * 26 25 24 49 49 H 1.07998 * 120.15451 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4443 -0.1202 5 6 4.2141 1.5732 -1.2709 6 6 3.6160 1.7397 -2.6441 7 7 3.5439 3.1648 -2.9758 8 6 4.6353 3.8007 -3.5047 9 1 4.5535 4.8235 -3.8418 10 6 5.8452 3.1290 -3.6126 11 7 5.9202 1.8534 -3.2972 12 14 7.3672 4.0355 -4.2053 13 1 7.7336 5.0846 -3.2202 14 1 8.4913 3.0756 -4.3472 15 1 7.0866 4.6671 -5.5197 16 6 2.3043 3.9095 -2.7419 17 6 1.3694 3.7330 -3.9401 18 6 0.0939 4.4987 -3.6991 19 8 -0.0522 5.1220 -2.6744 20 8 -0.8799 4.4882 -4.6230 21 6 -2.0803 5.2483 -4.3239 22 7 5.4889 1.5377 -1.0125 23 6 5.6797 1.3785 0.3224 24 6 6.8169 1.2782 1.1282 25 6 6.6827 1.1191 2.4783 26 6 5.4253 1.0561 3.0621 27 6 4.2895 1.1526 2.2869 28 6 4.4063 1.3132 0.9129 29 1 -0.3633 0.5893 0.8418 30 1 -0.3633 0.4343 -0.9313 31 1 -0.3633 -1.0238 0.0895 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7515 1.9299 0.9314 35 1 1.6054 1.9816 -0.8418 36 1 2.6134 1.3122 -2.6579 37 1 4.2396 1.2272 -3.3766 38 1 6.7788 1.4019 -3.3029 39 1 1.8176 3.5318 -1.8426 40 1 2.5345 4.9671 -2.6134 41 1 1.8560 4.1107 -4.8393 42 1 1.1391 2.6754 -4.0686 43 1 -2.7843 5.1558 -5.1509 44 1 -2.5371 4.8625 -3.4126 45 1 -1.8206 6.2976 -4.1841 46 1 7.8003 1.3263 0.6844 47 1 7.5640 1.0415 3.0976 48 1 5.3360 0.9305 4.1312 49 1 3.3133 1.1026 2.7463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:42 Heat of formation + Delta-G solvation = 33.580214 kcal Electronic energy + Delta-G solvation = -31452.030194 eV Core-core repulsion = 27381.951040 eV Total energy + Delta-G solvation = -4070.079154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24599 -40.21911 -37.12014 -36.48408 -35.71230 -35.08291 -32.31016 -31.81975 -30.21177 -29.53545 -28.90891 -27.50157 -26.15436 -25.95657 -24.33342 -22.11115 -21.80110 -21.24190 -20.88835 -20.14543 -18.93872 -17.50800 -17.08189 -16.62993 -16.37667 -16.28215 -16.16085 -15.00663 -14.88791 -14.69532 -14.55337 -14.06178 -13.71746 -13.65172 -13.38219 -13.20171 -13.11878 -12.99108 -12.65836 -12.34678 -12.18338 -12.12761 -11.98381 -11.57987 -11.54326 -11.39705 -11.09153 -10.85860 -10.82884 -10.76534 -10.72715 -10.71355 -10.45902 -10.27885 -10.20366 -9.93150 -9.78960 -9.51272 -8.78347 -8.47545 -7.54885 -7.22447 -7.01241 -5.48411 -3.10251 1.68021 2.17696 2.44760 2.91292 3.38686 3.46544 3.53032 3.54026 3.79628 4.52704 4.69294 4.84577 4.95653 5.04626 5.07401 5.08332 5.14300 5.23590 5.33266 5.34885 5.44289 5.46162 5.48306 5.50215 5.58354 5.62752 5.70771 5.73321 5.85515 5.92327 5.97975 6.04476 6.08148 6.13513 6.23422 6.28687 6.34704 6.44706 6.51776 6.54332 6.76150 6.78409 7.05761 7.23122 7.29027 7.58036 7.66948 7.74799 7.96624 8.17311 8.40856 9.22968 9.29798 9.82098 10.19079 11.35563 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.004706 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.325243 B = 5948.688707 C = 8587.528850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.114 3.886 4 N -0.503 5.503 5 C 0.315 3.685 6 C 0.218 3.782 7 N -0.580 5.580 8 C -0.287 4.287 9 H 0.074 0.926 10 C 0.020 3.980 11 N -0.857 5.857 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.290 1.290 15 H -0.287 1.287 16 C 0.162 3.838 17 C -0.135 4.135 18 C 0.462 3.538 19 O -0.514 6.514 20 O -0.365 6.365 21 C 0.035 3.965 22 N -0.415 5.415 23 C 0.040 3.960 24 C -0.070 4.070 25 C -0.144 4.144 26 C -0.128 4.128 27 C -0.112 4.112 28 C 0.029 3.971 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.019 0.981 37 H 0.162 0.838 38 H 0.261 0.739 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 -2.801 4.366 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.009 4.009 4 N -0.195 5.195 5 C 0.048 3.952 6 C 0.090 3.910 7 N -0.299 5.299 8 C -0.415 4.415 9 H 0.092 0.908 10 C -0.180 4.180 11 N -0.500 5.500 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.216 1.216 15 H -0.214 1.214 16 C 0.033 3.967 17 C -0.176 4.176 18 C 0.306 3.694 19 O -0.402 6.402 20 O -0.282 6.282 21 C -0.060 4.060 22 N -0.131 5.131 23 C -0.080 4.080 24 C -0.089 4.089 25 C -0.164 4.164 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.080 4.080 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.178 0.822 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.170 -2.651 3.964 12.145 hybrid contribution -0.064 0.725 0.811 1.090 sum -11.234 -1.926 4.775 12.358 Atomic orbital electron populations 1.21688 0.94889 1.01897 1.02065 1.21916 0.96152 0.96571 1.03145 1.21699 0.78283 0.97510 1.03437 1.45892 1.05600 1.61146 1.06856 1.25757 0.86783 0.93142 0.89468 1.20496 0.95569 0.86095 0.88877 1.44046 1.08750 1.05655 1.71444 1.19065 0.88593 0.96633 1.37215 0.90769 1.24728 0.97527 0.96008 0.99774 1.69451 1.24210 1.07619 1.48684 0.86314 0.83236 0.78663 0.78001 1.21582 1.21607 1.21351 1.20588 0.86403 0.97423 0.92254 1.22458 0.89162 1.00310 1.05680 1.24448 0.85140 0.79030 0.80811 1.90632 1.80264 1.41581 1.27755 1.86578 1.26827 1.67115 1.47708 1.23173 0.84799 0.95828 1.02158 1.71408 1.14744 1.18669 1.08295 1.19820 0.91896 1.03593 0.92715 1.19942 0.96688 0.99896 0.92397 1.20411 0.96960 1.04727 0.94343 1.20589 0.92002 1.03691 0.98544 1.19784 0.98308 1.05343 0.89902 1.18965 0.91440 1.07138 0.90490 0.92669 0.92346 0.92343 0.91007 0.91719 0.90667 0.89059 0.96247 0.82218 0.92640 0.94160 0.92142 0.87373 0.88431 0.88582 0.92238 0.92190 0.86402 0.86678 0.86674 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.11 16 2 C -0.14 -1.77 6.26 -26.73 -0.17 -1.94 16 3 C 0.11 1.73 5.81 -4.04 -0.02 1.71 16 4 N -0.50 -9.85 2.81 -111.15 -0.31 -10.16 16 5 C 0.32 7.14 7.12 -154.82 -1.10 6.04 16 6 C 0.22 4.74 5.16 -5.20 -0.03 4.71 16 7 N -0.58 -13.00 2.53 -174.62 -0.44 -13.44 16 8 C -0.29 -7.30 9.76 -15.06 -0.15 -7.45 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C 0.02 0.53 5.34 -17.43 -0.09 0.44 16 11 N -0.86 -22.62 6.50 55.49 0.36 -22.26 16 12 Si 0.91 21.70 29.56 -169.99 -5.02 16.68 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 C 0.16 3.08 4.94 -4.05 -0.02 3.06 16 17 C -0.14 -2.13 6.13 -27.89 -0.17 -2.30 16 18 C 0.46 7.15 7.96 36.01 0.29 7.43 16 19 O -0.51 -9.14 15.73 -18.75 -0.29 -9.44 16 20 O -0.37 -4.95 10.57 -39.27 -0.41 -5.37 16 21 C 0.03 0.35 10.56 101.05 1.07 1.41 16 22 N -0.42 -10.36 8.45 -8.23 -0.07 -10.43 16 23 C 0.04 0.90 7.23 -84.70 -0.61 0.29 16 24 C -0.07 -1.37 10.05 -39.61 -0.40 -1.76 16 25 C -0.14 -2.34 9.96 -39.97 -0.40 -2.74 16 26 C -0.13 -1.99 10.03 -39.52 -0.40 -2.38 16 27 C -0.11 -1.90 10.05 -39.50 -0.40 -2.30 16 28 C 0.03 0.60 6.87 -83.99 -0.58 0.02 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 35 H 0.09 1.40 5.22 -51.93 -0.27 1.13 16 36 H 0.02 0.36 7.19 -51.93 -0.37 -0.01 16 37 H 0.16 3.93 5.42 -52.50 -0.28 3.64 16 38 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 39 H 0.04 0.75 6.02 -51.93 -0.31 0.44 16 40 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 41 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 45 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 46 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 47 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 48 H 0.12 1.41 8.06 -52.48 -0.42 0.98 16 49 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -30.45 400.34 -10.52 -40.96 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.54 Total: 4.28 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.81 Total: 3.13 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.46 Total: -56.29 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.71 Total: -14.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.45 -10.52 -40.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.540 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds