Wall clock time and date at job start Wed Apr 1 2020 03:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47023 * 2 1 4 4 N 1.46507 * 109.47369 * 184.99295 * 3 2 1 5 5 C 1.36036 * 126.34405 * 95.03864 * 4 3 2 6 6 C 1.50695 * 124.95366 * 0.02562 * 5 4 3 7 7 N 1.46495 * 109.47259 * 94.96466 * 6 5 4 8 8 C 1.36945 * 119.99842 * 84.39372 * 7 6 5 9 9 H 1.08001 * 119.99695 * 173.81876 * 8 7 6 10 10 C 1.38807 * 119.99735 * 354.09006 * 8 7 6 11 11 N 1.31619 * 120.00216 * 4.90368 * 10 8 7 12 12 Si 1.86800 * 119.99815 * 184.90723 * 10 8 7 13 13 H 1.48504 * 109.47342 * 65.00119 * 12 10 8 14 14 H 1.48503 * 109.47391 * 184.99765 * 12 10 8 15 15 H 1.48497 * 109.47217 * 305.00179 * 12 10 8 16 16 C 1.46494 * 120.00344 * 264.38659 * 7 6 5 17 17 C 1.52993 * 109.47596 * 275.02414 * 16 7 6 18 18 C 1.50703 * 109.47273 * 179.97438 * 17 16 7 19 19 O 1.20826 * 120.00090 * 0.02562 * 18 17 16 20 20 O 1.34235 * 119.99798 * 180.02562 * 18 17 16 21 21 C 1.45199 * 116.99524 * 180.02562 * 20 18 17 22 22 N 1.30115 * 110.09758 * 179.74194 * 5 4 3 23 23 C 1.35783 * 109.64179 * 0.22611 * 22 5 4 24 24 C 1.39741 * 133.60635 * 179.97438 * 23 22 5 25 25 C 1.36604 * 119.88888 * 179.97438 * 24 23 22 26 26 C 1.38774 * 120.66940 * 359.97438 * 25 24 23 27 27 C 1.37852 * 120.45225 * 0.03870 * 26 25 24 28 28 C 1.38046 * 126.35047 * 275.16527 * 4 3 2 29 29 H 1.08993 * 109.47134 * 304.99339 * 1 2 3 30 30 H 1.08992 * 109.46921 * 64.99948 * 1 2 3 31 31 H 1.09003 * 109.46651 * 184.99394 * 1 2 3 32 32 H 1.09004 * 109.47494 * 240.00359 * 2 1 3 33 33 H 1.08998 * 109.47546 * 119.99964 * 2 1 3 34 34 H 1.09007 * 109.47158 * 64.99533 * 3 2 1 35 35 H 1.09002 * 109.47654 * 304.99663 * 3 2 1 36 36 H 1.09007 * 109.46854 * 334.96782 * 6 5 4 37 37 H 1.09003 * 109.47269 * 214.97032 * 6 5 4 38 38 H 0.97005 * 120.00065 * 184.99427 * 11 10 8 39 39 H 1.09006 * 109.47026 * 35.02580 * 16 7 6 40 40 H 1.08999 * 109.47435 * 155.01877 * 16 7 6 41 41 H 1.08998 * 109.47353 * 300.00155 * 17 16 7 42 42 H 1.09005 * 109.47193 * 59.99761 * 17 16 7 43 43 H 1.08999 * 109.46692 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.47138 * 299.99490 * 21 20 18 45 45 H 1.08996 * 109.47496 * 59.99975 * 21 20 18 46 46 H 1.07998 * 120.05749 * 359.97438 * 24 23 22 47 47 H 1.07996 * 119.66537 * 179.97438 * 25 24 23 48 48 H 1.08009 * 119.77287 * 180.02562 * 26 25 24 49 49 H 1.07998 * 120.15451 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4443 -0.1202 5 6 4.2141 1.5732 -1.2709 6 6 3.6160 1.7397 -2.6441 7 7 3.5439 3.1648 -2.9758 8 6 4.6353 3.8007 -3.5047 9 1 4.5535 4.8235 -3.8418 10 6 5.8452 3.1290 -3.6126 11 7 5.9202 1.8534 -3.2972 12 14 7.3672 4.0355 -4.2053 13 1 7.7336 5.0846 -3.2202 14 1 8.4913 3.0756 -4.3472 15 1 7.0866 4.6671 -5.5197 16 6 2.3043 3.9095 -2.7419 17 6 1.3694 3.7330 -3.9401 18 6 0.0939 4.4987 -3.6991 19 8 -0.0522 5.1220 -2.6744 20 8 -0.8799 4.4882 -4.6230 21 6 -2.0803 5.2483 -4.3239 22 7 5.4889 1.5377 -1.0125 23 6 5.6797 1.3785 0.3224 24 6 6.8169 1.2782 1.1282 25 6 6.6827 1.1191 2.4783 26 6 5.4253 1.0561 3.0621 27 6 4.2895 1.1526 2.2869 28 6 4.4063 1.3132 0.9129 29 1 -0.3633 0.5893 0.8418 30 1 -0.3633 0.4343 -0.9313 31 1 -0.3633 -1.0238 0.0895 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.7515 1.9299 0.9314 35 1 1.6054 1.9816 -0.8418 36 1 2.6134 1.3122 -2.6579 37 1 4.2396 1.2272 -3.3766 38 1 6.7788 1.4019 -3.3029 39 1 1.8176 3.5318 -1.8426 40 1 2.5345 4.9671 -2.6134 41 1 1.8560 4.1107 -4.8393 42 1 1.1391 2.6754 -4.0686 43 1 -2.7843 5.1558 -5.1509 44 1 -2.5371 4.8625 -3.4126 45 1 -1.8206 6.2976 -4.1841 46 1 7.8003 1.3263 0.6844 47 1 7.5640 1.0415 3.0976 48 1 5.3360 0.9305 4.1312 49 1 3.3133 1.1026 2.7463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:41 Heat of formation + Delta-G solvation = 19.713712 kcal Electronic energy + Delta-G solvation = -31452.631490 eV Core-core repulsion = 27381.951040 eV Total energy + Delta-G solvation = -4070.680451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.73707 -41.42089 -38.57260 -37.74697 -37.20605 -36.32438 -33.96259 -33.13750 -31.82205 -30.89537 -30.39083 -28.53739 -27.80836 -27.11796 -25.90288 -23.53283 -23.04083 -22.65583 -22.24458 -21.49252 -20.48681 -19.01342 -18.53239 -17.99964 -17.64969 -17.53703 -17.45331 -16.64979 -16.28017 -16.06108 -15.90194 -15.48452 -15.20108 -14.95959 -14.70461 -14.67359 -14.45223 -14.26039 -14.00898 -13.67426 -13.37324 -13.18331 -13.16151 -12.92110 -12.76485 -12.71836 -12.70432 -12.55686 -12.28161 -12.17692 -12.11439 -11.96902 -11.78600 -11.75311 -11.71066 -11.52225 -11.50588 -10.97074 -10.66489 -10.13272 -8.99952 -8.83845 -8.70753 -7.43417 -5.05509 0.25659 0.78939 1.22032 1.50331 1.53900 1.58042 1.80560 2.01003 2.29760 2.61992 3.17526 3.48244 3.69837 3.71947 3.73071 3.91306 3.95590 4.06274 4.13840 4.22353 4.27814 4.32061 4.33778 4.35548 4.37224 4.38711 4.52841 4.63549 4.68311 4.70669 4.74676 4.83201 4.85014 4.92501 4.97933 5.07603 5.09383 5.14394 5.22294 5.36294 5.41797 5.44006 5.69667 5.73037 5.73649 5.80276 5.92794 6.25779 6.47455 6.70859 6.78173 7.29284 7.70601 7.94861 8.28914 9.32999 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008137 B = 0.004706 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.325243 B = 5948.688707 C = 8587.528850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.109 3.891 4 N -0.500 5.500 5 C 0.295 3.705 6 C 0.227 3.773 7 N -0.590 5.590 8 C -0.291 4.291 9 H 0.069 0.931 10 C -0.019 4.019 11 N -0.858 5.858 12 Si 0.949 3.051 13 H -0.303 1.303 14 H -0.299 1.299 15 H -0.276 1.276 16 C 0.167 3.833 17 C -0.124 4.124 18 C 0.472 3.528 19 O -0.541 6.541 20 O -0.366 6.366 21 C 0.027 3.973 22 N -0.465 5.465 23 C -0.010 4.010 24 C -0.098 4.098 25 C -0.131 4.131 26 C -0.114 4.114 27 C -0.115 4.115 28 C 0.018 3.982 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.131 0.869 38 H 0.245 0.755 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.131 0.869 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.151 0.849 48 H 0.161 0.839 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 -3.168 6.311 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.013 4.013 4 N -0.191 5.191 5 C 0.027 3.973 6 C 0.099 3.901 7 N -0.310 5.310 8 C -0.420 4.420 9 H 0.087 0.913 10 C -0.218 4.218 11 N -0.501 5.501 12 Si 0.780 3.220 13 H -0.231 1.231 14 H -0.225 1.225 15 H -0.201 1.201 16 C 0.040 3.960 17 C -0.164 4.164 18 C 0.317 3.683 19 O -0.431 6.431 20 O -0.282 6.282 21 C -0.066 4.066 22 N -0.182 5.182 23 C -0.130 4.130 24 C -0.118 4.118 25 C -0.152 4.152 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.092 4.092 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.148 0.852 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.169 0.831 48 H 0.179 0.821 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.736 -3.016 5.895 15.249 hybrid contribution 0.657 0.860 0.333 1.132 sum -13.079 -2.156 6.228 14.646 Atomic orbital electron populations 1.21658 0.92420 1.03107 1.02695 1.21832 0.98076 0.94497 1.02381 1.21995 0.75908 0.99357 1.04023 1.45946 1.07021 1.60261 1.05862 1.25594 0.86821 0.94369 0.90506 1.20170 0.96245 0.85536 0.88141 1.44073 1.09160 1.06047 1.71768 1.19166 0.89651 0.96440 1.36754 0.91338 1.25204 0.99130 0.96674 1.00837 1.69743 1.23025 1.07965 1.49328 0.85665 0.81374 0.77279 0.77697 1.23132 1.22523 1.20142 1.20541 0.85787 0.95734 0.93964 1.22112 0.89021 1.01624 1.03621 1.24124 0.85340 0.78315 0.80567 1.90628 1.80845 1.42704 1.28895 1.86542 1.27475 1.67384 1.46792 1.23529 0.83761 0.95289 1.04041 1.71203 1.16544 1.20076 1.10395 1.20262 0.94136 1.06103 0.92467 1.20169 0.95809 1.01830 0.93984 1.20845 0.99056 1.02202 0.93058 1.21157 0.90862 1.00725 1.00622 1.20225 1.00469 1.04446 0.88447 1.19317 0.90588 1.07522 0.91820 0.91525 0.92156 0.90940 0.92564 0.91718 0.89130 0.89402 0.93381 0.85234 0.94298 0.93590 0.94216 0.87467 0.86593 0.85059 0.91807 0.92356 0.87296 0.83141 0.82118 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 71.98 0.71 -1.71 16 2 C -0.13 -3.07 6.26 30.59 0.19 -2.88 16 3 C 0.11 3.16 5.81 86.38 0.50 3.67 16 4 N -0.50 -19.62 2.81 -505.57 -1.42 -21.04 16 5 C 0.29 13.84 7.12 137.92 0.98 14.82 16 6 C 0.23 10.20 5.16 85.63 0.44 10.64 16 7 N -0.59 -27.13 2.53 -706.37 -1.79 -28.92 16 8 C -0.29 -15.31 9.76 84.03 0.82 -14.49 16 9 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 10 C -0.02 -1.03 5.34 84.86 0.45 -0.58 16 11 N -0.86 -47.69 6.50 21.65 0.14 -47.55 16 12 Si 0.95 46.35 29.56 68.60 2.03 48.38 16 13 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 14 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 16 C 0.17 6.41 4.94 86.38 0.43 6.83 16 17 C -0.12 -3.79 6.13 29.85 0.18 -3.61 16 18 C 0.47 13.98 7.96 71.24 0.57 14.54 16 19 O -0.54 -18.70 15.73 21.96 0.35 -18.36 16 20 O -0.37 -9.13 10.57 -51.46 -0.54 -9.67 16 21 C 0.03 0.47 10.56 113.37 1.20 1.67 16 22 N -0.46 -24.44 8.45 -179.96 -1.52 -25.96 16 23 C -0.01 -0.48 7.23 39.45 0.29 -0.19 16 24 C -0.10 -3.92 10.05 22.25 0.22 -3.70 16 25 C -0.13 -3.98 9.96 22.02 0.22 -3.76 16 26 C -0.11 -3.09 10.03 22.31 0.22 -2.87 16 27 C -0.12 -3.58 10.05 22.32 0.22 -3.35 16 28 C 0.02 0.70 6.87 38.86 0.27 0.97 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 35 H 0.09 2.60 5.22 -2.39 -0.01 2.58 16 36 H 0.05 1.81 7.19 -2.38 -0.02 1.80 16 37 H 0.13 6.68 5.42 -3.52 -0.02 6.66 16 38 H 0.25 14.12 8.32 -92.70 -0.77 13.34 16 39 H 0.05 1.70 6.02 -2.38 -0.01 1.69 16 40 H 0.04 1.67 7.96 -2.39 -0.02 1.65 16 41 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.12 3.15 8.14 -2.38 -0.02 3.13 16 43 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 45 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 46 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 47 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 48 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 49 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -70.55 400.34 6.10 -64.45 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.94 Total: 22.66 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.92 Total: 16.02 kcal Atomic # 7 Polarization: -118.89 SS G_CDS: -4.58 Total: -123.47 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.20 Total: -28.03 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -70.55 6.10 -64.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.161 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds