Wall clock time and date at job start Wed Apr 1 2020 03:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47247 * 2 1 4 4 N 1.46498 * 109.47482 * 120.00056 * 2 1 3 5 5 C 1.46505 * 120.00052 * 123.46530 * 4 2 1 6 6 C 1.53006 * 109.46747 * 262.82699 * 5 4 2 7 7 C 1.53779 * 113.61229 * 85.86366 * 6 5 4 8 8 C 1.54055 * 86.98287 * 140.01584 * 7 6 5 9 9 C 1.53779 * 87.07872 * 334.56955 * 8 7 6 10 10 C 1.34782 * 119.99897 * 303.46361 * 4 2 1 11 11 O 1.21352 * 119.99926 * 3.65212 * 10 4 2 12 12 C 1.49374 * 119.99710 * 183.64902 * 10 4 2 13 13 O 1.21356 * 120.00163 * 354.57750 * 12 10 4 14 14 N 1.34774 * 119.99362 * 174.56962 * 12 10 4 15 15 C 1.39118 * 119.99621 * 185.18454 * 14 12 10 16 16 C 1.39707 * 119.57759 * 185.85289 * 15 14 12 17 17 C 1.38653 * 119.49083 * 179.77048 * 16 15 14 18 18 C 1.38341 * 118.67182 * 0.50184 * 17 16 15 19 19 C 1.40599 * 119.13686 * 359.74997 * 18 17 16 20 20 C 1.41336 * 119.78537 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00518 * 359.97438 * 20 19 18 22 22 C 1.40027 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.30746 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00268 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46747 * 90.00232 * 24 22 20 26 26 H 1.48498 * 109.47553 * 210.00099 * 24 22 20 27 27 H 1.48502 * 109.47244 * 330.00591 * 24 22 20 28 28 N 1.31939 * 119.57628 * 6.13476 * 15 14 12 29 29 H 1.09007 * 109.46937 * 305.67792 * 1 2 3 30 30 H 1.08997 * 109.47240 * 65.67631 * 1 2 3 31 31 H 1.08997 * 109.46968 * 185.68262 * 1 2 3 32 32 H 1.09005 * 109.47350 * 240.00431 * 2 1 3 33 33 H 1.09003 * 109.46959 * 184.90619 * 3 2 1 34 34 H 1.08996 * 109.46726 * 304.90634 * 3 2 1 35 35 H 1.08998 * 109.46833 * 64.90624 * 3 2 1 36 36 H 1.08998 * 109.46841 * 142.82812 * 5 4 2 37 37 H 1.08993 * 109.47276 * 22.82668 * 5 4 2 38 38 H 1.08993 * 112.84695 * 314.66559 * 6 5 4 39 39 H 1.08993 * 113.61544 * 254.61044 * 7 6 5 40 40 H 1.08999 * 113.61556 * 25.51392 * 7 6 5 41 41 H 1.09001 * 113.61618 * 220.01782 * 8 7 6 42 42 H 1.09003 * 113.61072 * 89.11436 * 8 7 6 43 43 H 1.09004 * 113.61215 * 270.88410 * 9 8 7 44 44 H 1.08995 * 113.69156 * 139.99242 * 9 8 7 45 45 H 0.96997 * 120.00600 * 5.19149 * 14 12 10 46 46 H 1.08001 * 120.25387 * 0.02562 * 16 15 14 47 47 H 1.08000 * 120.66097 * 180.24638 * 17 16 15 48 48 H 1.08005 * 120.43403 * 179.76923 * 18 17 16 49 49 H 0.97000 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9222 -1.8359 1.0630 6 6 2.1163 -3.1339 1.1460 7 6 1.5282 -3.5811 -0.2027 8 6 1.8984 -5.0198 0.2055 9 6 2.9848 -4.4021 1.1016 10 6 1.6362 -0.2723 2.4191 11 8 0.8361 0.6336 2.5279 12 6 2.1976 -0.9238 3.6404 13 8 2.9206 -1.8925 3.5334 14 7 1.9011 -0.4355 4.8611 15 6 2.5080 -0.9734 5.9915 16 6 2.1052 -0.5468 7.2594 17 6 2.7080 -1.0875 8.3849 18 6 3.7043 -2.0322 8.2152 19 6 4.0688 -2.4163 6.9127 20 6 5.0845 -3.3806 6.7235 21 1 5.5783 -3.8197 7.5777 22 6 5.4507 -3.7669 5.4283 23 7 4.8534 -3.2350 4.3940 24 14 6.7937 -5.0409 5.1780 25 1 6.1892 -6.3970 5.1439 26 1 7.4925 -4.7781 3.8944 27 1 7.7668 -4.9608 6.2969 28 7 3.4604 -1.8757 5.8523 29 1 -0.3633 0.5994 0.8348 30 1 -0.3633 0.4233 -0.9364 31 1 -0.3633 -1.0226 0.1018 32 1 1.8933 -0.5138 -0.8900 33 1 3.1265 1.4438 -0.0879 34 1 1.6067 1.9811 -0.8428 35 1 1.7502 1.9303 0.9307 36 1 3.6582 -1.8132 1.8666 37 1 3.4326 -1.7861 0.1013 38 1 1.3904 -3.1300 1.9591 39 1 0.4549 -3.4125 -0.2884 40 1 2.0854 -3.2149 -1.0649 41 1 2.2963 -5.6176 -0.6144 42 1 1.1128 -5.5316 0.7615 43 1 3.9396 -4.2599 0.5952 44 1 3.0877 -4.8950 2.0682 45 1 1.2645 0.2907 4.9516 46 1 1.3275 0.1955 7.3622 47 1 2.4086 -0.7743 9.3742 48 1 4.1955 -2.4692 9.0720 49 1 5.1073 -3.5023 3.4968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890230781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:31 Heat of formation + Delta-G solvation = 19.023782 kcal Electronic energy + Delta-G solvation = -32218.066847 eV Core-core repulsion = 28147.356479 eV Total energy + Delta-G solvation = -4070.710368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64079 -38.90973 -38.35242 -37.30127 -35.90520 -34.25194 -33.10063 -32.26851 -30.37401 -29.20110 -27.78967 -27.17256 -25.79374 -25.38362 -24.69275 -22.78246 -22.26733 -21.40868 -20.38514 -19.19074 -18.84946 -17.78384 -17.03449 -16.37424 -15.81390 -15.60266 -15.46672 -15.02157 -14.71529 -14.48405 -14.33007 -13.92623 -13.73926 -13.69755 -13.52773 -13.09455 -12.95065 -12.71323 -12.30694 -12.28078 -12.11965 -12.02360 -11.92525 -11.69129 -11.40662 -11.27996 -11.21541 -11.17222 -11.00990 -10.69846 -10.56419 -10.52421 -10.34267 -10.16491 -9.97745 -9.93594 -9.70916 -9.08971 -8.71672 -8.41698 -8.02585 -7.31729 -7.02983 -6.23369 -4.45066 1.97974 2.77120 2.82530 3.08972 3.12248 3.15038 3.23069 3.89905 3.99914 4.00942 4.74529 4.81236 4.86393 4.87668 4.92426 5.05906 5.09832 5.11738 5.23320 5.42725 5.62038 5.65157 5.68435 5.80453 5.84520 5.88286 5.90786 5.97406 5.98884 6.06559 6.07003 6.18360 6.25972 6.30395 6.40549 6.44324 6.46835 6.59484 6.68129 6.78349 6.79742 6.82331 7.18800 7.35540 7.48581 7.53525 7.76521 7.89368 8.06626 8.21500 8.38867 8.65173 8.94252 9.03298 10.14519 10.40081 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.004898 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.311253 B = 5715.198115 C = 7798.742055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.144 3.856 3 C -0.168 4.168 4 N -0.580 5.580 5 C 0.102 3.898 6 C -0.102 4.102 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.124 4.124 10 C 0.508 3.492 11 O -0.534 6.534 12 C 0.465 3.535 13 O -0.379 6.379 14 N -0.640 5.640 15 C 0.370 3.630 16 C -0.349 4.349 17 C -0.036 4.036 18 C -0.301 4.301 19 C 0.273 3.727 20 C -0.424 4.424 21 H 0.082 0.918 22 C 0.063 3.937 23 N -0.661 5.661 24 Si 0.894 3.106 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.264 1.264 28 N -0.473 5.473 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.410 0.590 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 2.123 -11.941 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.041 3.959 3 C -0.226 4.226 4 N -0.313 5.313 5 C -0.019 4.019 6 C -0.122 4.122 7 C -0.178 4.178 8 C -0.181 4.181 9 C -0.162 4.162 10 C 0.292 3.708 11 O -0.411 6.411 12 C 0.242 3.758 13 O -0.243 6.243 14 N -0.289 5.289 15 C 0.132 3.868 16 C -0.375 4.375 17 C -0.060 4.060 18 C -0.324 4.324 19 C 0.148 3.852 20 C -0.455 4.455 21 H 0.100 0.900 22 C -0.166 4.166 23 N -0.280 5.280 24 Si 0.719 3.281 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.188 1.188 28 N -0.192 5.192 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.144 0.856 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.245 0.755 46 H 0.112 0.888 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.203 1.592 -13.139 13.887 hybrid contribution -0.083 0.091 0.708 0.719 sum -4.285 1.684 -12.431 13.256 Atomic orbital electron populations 1.22243 0.94730 1.02681 1.03076 1.21085 0.94876 0.93124 0.86796 1.22183 1.00938 0.96063 1.03382 1.47966 1.47180 1.31529 1.04654 1.22346 0.92736 0.82979 1.03868 1.22712 0.98524 0.94044 0.96903 1.23088 1.00351 0.96718 0.97630 1.22852 0.99453 0.96158 0.99623 1.22753 0.96947 0.96135 1.00363 1.20728 0.81756 0.83288 0.85016 1.90615 1.33595 1.30171 1.86761 1.20183 0.84575 0.86791 0.84245 1.91073 1.28589 1.20741 1.83884 1.43036 1.44081 1.37421 1.04322 1.18543 0.92019 0.92824 0.83458 1.20520 1.11766 1.13328 0.91869 1.20574 0.94589 0.94780 0.96094 1.21652 1.05769 1.07133 0.97881 1.18338 0.90600 0.90460 0.85820 1.19560 1.15019 1.17885 0.93011 0.90011 1.26098 0.97074 0.97043 0.96394 1.70298 1.29453 1.29691 0.98512 0.86545 0.81558 0.81426 0.78617 1.19637 1.20285 1.18818 1.68613 1.08389 1.10681 1.31492 0.89847 0.92307 0.92706 0.89748 0.92694 0.91831 0.90815 0.85556 0.91567 0.89374 0.92273 0.90680 0.92036 0.90628 0.90464 0.90717 0.75465 0.88848 0.88482 0.88485 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 8.94 37.15 0.33 -1.63 16 2 C 0.14 1.69 3.27 -67.93 -0.22 1.47 16 3 C -0.17 -1.92 9.23 37.16 0.34 -1.57 16 4 N -0.58 -8.30 2.44 -166.63 -0.41 -8.71 16 5 C 0.10 1.45 4.81 -4.04 -0.02 1.43 16 6 C -0.10 -1.44 3.07 -89.81 -0.28 -1.71 16 7 C -0.14 -1.60 7.65 -25.78 -0.20 -1.80 16 8 C -0.14 -1.69 8.09 -25.78 -0.21 -1.89 16 9 C -0.12 -1.71 7.64 -25.92 -0.20 -1.91 16 10 C 0.51 8.70 7.06 -11.62 -0.08 8.61 16 11 O -0.53 -9.41 12.79 5.50 0.07 -9.34 16 12 C 0.46 9.31 7.69 -11.62 -0.09 9.22 16 13 O -0.38 -8.30 8.06 5.49 0.04 -8.26 16 14 N -0.64 -13.10 5.37 -11.83 -0.06 -13.16 16 15 C 0.37 8.84 7.41 -155.08 -1.15 7.69 16 16 C -0.35 -7.79 9.96 -38.88 -0.39 -8.18 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.30 -7.37 9.83 -38.65 -0.38 -7.75 16 19 C 0.27 7.34 6.55 -85.00 -0.56 6.78 16 20 C -0.42 -11.11 9.14 -37.73 -0.34 -11.45 16 21 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 22 C 0.06 1.54 5.50 -17.34 -0.10 1.44 16 23 N -0.66 -16.44 9.11 55.55 0.51 -15.94 16 24 Si 0.89 18.20 29.56 -169.99 -5.02 13.17 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 28 N -0.47 -12.56 5.74 -10.28 -0.06 -12.62 16 29 H 0.08 1.16 6.03 -51.93 -0.31 0.84 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.02 6.44 -51.93 -0.33 0.68 16 36 H 0.13 2.20 5.43 -51.93 -0.28 1.92 16 37 H 0.07 0.78 7.54 -51.93 -0.39 0.39 16 38 H 0.09 1.49 7.74 -51.93 -0.40 1.09 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.41 7.31 8.18 -40.82 -0.33 6.97 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 48 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 49 H 0.27 6.19 8.29 -40.82 -0.34 5.85 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -28.37 390.92 -10.46 -38.83 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -7.49 Total: 12.59 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.93 Total: -2.45 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.02 Total: -50.43 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.11 Total: -17.60 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.37 -10.46 -38.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890230781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.849 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds