Wall clock time and date at job start Wed Apr 1 2020 03:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47247 * 2 1 4 4 N 1.46498 * 109.47482 * 120.00056 * 2 1 3 5 5 C 1.46505 * 120.00052 * 123.46530 * 4 2 1 6 6 C 1.53006 * 109.46747 * 262.82699 * 5 4 2 7 7 C 1.53779 * 113.61229 * 85.86366 * 6 5 4 8 8 C 1.54055 * 86.98287 * 140.01584 * 7 6 5 9 9 C 1.53779 * 87.07872 * 334.56955 * 8 7 6 10 10 C 1.34782 * 119.99897 * 303.46361 * 4 2 1 11 11 O 1.21352 * 119.99926 * 3.65212 * 10 4 2 12 12 C 1.49374 * 119.99710 * 183.64902 * 10 4 2 13 13 O 1.21356 * 120.00163 * 354.57750 * 12 10 4 14 14 N 1.34774 * 119.99362 * 174.56962 * 12 10 4 15 15 C 1.39118 * 119.99621 * 185.18454 * 14 12 10 16 16 C 1.39707 * 119.57759 * 185.85289 * 15 14 12 17 17 C 1.38653 * 119.49083 * 179.77048 * 16 15 14 18 18 C 1.38341 * 118.67182 * 0.50184 * 17 16 15 19 19 C 1.40599 * 119.13686 * 359.74997 * 18 17 16 20 20 C 1.41336 * 119.78537 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00518 * 359.97438 * 20 19 18 22 22 C 1.40027 * 119.99966 * 179.97438 * 20 19 18 23 23 N 1.30746 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00268 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.46747 * 90.00232 * 24 22 20 26 26 H 1.48498 * 109.47553 * 210.00099 * 24 22 20 27 27 H 1.48502 * 109.47244 * 330.00591 * 24 22 20 28 28 N 1.31939 * 119.57628 * 6.13476 * 15 14 12 29 29 H 1.09007 * 109.46937 * 305.67792 * 1 2 3 30 30 H 1.08997 * 109.47240 * 65.67631 * 1 2 3 31 31 H 1.08997 * 109.46968 * 185.68262 * 1 2 3 32 32 H 1.09005 * 109.47350 * 240.00431 * 2 1 3 33 33 H 1.09003 * 109.46959 * 184.90619 * 3 2 1 34 34 H 1.08996 * 109.46726 * 304.90634 * 3 2 1 35 35 H 1.08998 * 109.46833 * 64.90624 * 3 2 1 36 36 H 1.08998 * 109.46841 * 142.82812 * 5 4 2 37 37 H 1.08993 * 109.47276 * 22.82668 * 5 4 2 38 38 H 1.08993 * 112.84695 * 314.66559 * 6 5 4 39 39 H 1.08993 * 113.61544 * 254.61044 * 7 6 5 40 40 H 1.08999 * 113.61556 * 25.51392 * 7 6 5 41 41 H 1.09001 * 113.61618 * 220.01782 * 8 7 6 42 42 H 1.09003 * 113.61072 * 89.11436 * 8 7 6 43 43 H 1.09004 * 113.61215 * 270.88410 * 9 8 7 44 44 H 1.08995 * 113.69156 * 139.99242 * 9 8 7 45 45 H 0.96997 * 120.00600 * 5.19149 * 14 12 10 46 46 H 1.08001 * 120.25387 * 0.02562 * 16 15 14 47 47 H 1.08000 * 120.66097 * 180.24638 * 17 16 15 48 48 H 1.08005 * 120.43403 * 179.76923 * 18 17 16 49 49 H 0.97000 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9222 -1.8359 1.0630 6 6 2.1163 -3.1339 1.1460 7 6 1.5282 -3.5811 -0.2027 8 6 1.8984 -5.0198 0.2055 9 6 2.9848 -4.4021 1.1016 10 6 1.6362 -0.2723 2.4191 11 8 0.8361 0.6336 2.5279 12 6 2.1976 -0.9238 3.6404 13 8 2.9206 -1.8925 3.5334 14 7 1.9011 -0.4355 4.8611 15 6 2.5080 -0.9734 5.9915 16 6 2.1052 -0.5468 7.2594 17 6 2.7080 -1.0875 8.3849 18 6 3.7043 -2.0322 8.2152 19 6 4.0688 -2.4163 6.9127 20 6 5.0845 -3.3806 6.7235 21 1 5.5783 -3.8197 7.5777 22 6 5.4507 -3.7669 5.4283 23 7 4.8534 -3.2350 4.3940 24 14 6.7937 -5.0409 5.1780 25 1 6.1892 -6.3970 5.1439 26 1 7.4925 -4.7781 3.8944 27 1 7.7668 -4.9608 6.2969 28 7 3.4604 -1.8757 5.8523 29 1 -0.3633 0.5994 0.8348 30 1 -0.3633 0.4233 -0.9364 31 1 -0.3633 -1.0226 0.1018 32 1 1.8933 -0.5138 -0.8900 33 1 3.1265 1.4438 -0.0879 34 1 1.6067 1.9811 -0.8428 35 1 1.7502 1.9303 0.9307 36 1 3.6582 -1.8132 1.8666 37 1 3.4326 -1.7861 0.1013 38 1 1.3904 -3.1300 1.9591 39 1 0.4549 -3.4125 -0.2884 40 1 2.0854 -3.2149 -1.0649 41 1 2.2963 -5.6176 -0.6144 42 1 1.1128 -5.5316 0.7615 43 1 3.9396 -4.2599 0.5952 44 1 3.0877 -4.8950 2.0682 45 1 1.2645 0.2907 4.9516 46 1 1.3275 0.1955 7.3622 47 1 2.4086 -0.7743 9.3742 48 1 4.1955 -2.4692 9.0720 49 1 5.1073 -3.5023 3.4968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890230781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:30 Heat of formation + Delta-G solvation = 5.285553 kcal Electronic energy + Delta-G solvation = -32218.662581 eV Core-core repulsion = 28147.356479 eV Total energy + Delta-G solvation = -4071.306103 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00902 -40.49416 -39.51675 -38.96106 -37.12580 -35.94385 -34.85431 -33.38050 -32.23266 -31.02175 -28.95377 -28.07830 -27.59933 -26.43034 -26.13509 -24.07912 -23.61446 -23.11519 -21.91914 -20.39526 -20.22129 -19.42660 -18.46503 -18.05716 -17.15927 -16.89513 -16.73951 -16.39779 -16.27934 -16.11506 -15.62589 -15.52828 -15.24272 -14.96138 -14.73322 -14.64069 -14.23798 -13.96243 -13.80593 -13.74014 -13.30024 -13.25783 -12.89865 -12.88323 -12.75006 -12.73286 -12.55580 -12.52185 -12.39928 -12.28285 -12.18316 -11.75245 -11.64138 -11.55132 -11.42658 -11.20843 -11.00841 -10.84763 -10.18606 -9.90024 -9.65569 -9.11118 -8.85284 -8.05763 -6.38941 0.46640 1.06893 1.29886 1.43752 1.44883 1.53199 1.56455 2.29169 2.42917 2.54155 3.01380 3.40840 3.75615 3.86113 3.89896 3.99352 4.04710 4.07734 4.17316 4.26822 4.34336 4.39865 4.62863 4.67961 4.71433 4.78044 4.83278 4.86108 4.89902 4.90168 4.95122 4.96939 4.98143 5.00845 5.09063 5.11133 5.19105 5.25586 5.36054 5.39474 5.42251 5.63579 5.66010 5.71129 5.78913 5.92061 6.07668 6.18252 6.30703 6.55187 6.76752 6.92066 7.07509 7.37266 8.27860 8.58427 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.004898 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.311253 B = 5715.198115 C = 7798.742055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 C -0.163 4.163 4 N -0.568 5.568 5 C 0.107 3.893 6 C -0.105 4.105 7 C -0.121 4.121 8 C -0.136 4.136 9 C -0.129 4.129 10 C 0.512 3.488 11 O -0.542 6.542 12 C 0.451 3.549 13 O -0.398 6.398 14 N -0.638 5.638 15 C 0.351 3.649 16 C -0.348 4.348 17 C -0.033 4.033 18 C -0.325 4.325 19 C 0.240 3.760 20 C -0.460 4.460 21 H 0.083 0.917 22 C 0.019 3.981 23 N -0.681 5.681 24 Si 0.967 3.033 25 H -0.269 1.269 26 H -0.268 1.268 27 H -0.262 1.262 28 N -0.499 5.499 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.037 0.963 45 H 0.420 0.580 46 H 0.125 0.875 47 H 0.135 0.865 48 H 0.105 0.895 49 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 2.404 -14.571 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 C -0.221 4.221 4 N -0.300 5.300 5 C -0.015 4.015 6 C -0.125 4.125 7 C -0.159 4.159 8 C -0.173 4.173 9 C -0.167 4.167 10 C 0.295 3.705 11 O -0.421 6.421 12 C 0.230 3.770 13 O -0.262 6.262 14 N -0.288 5.288 15 C 0.113 3.887 16 C -0.373 4.373 17 C -0.057 4.057 18 C -0.348 4.348 19 C 0.114 3.886 20 C -0.491 4.491 21 H 0.101 0.899 22 C -0.207 4.207 23 N -0.300 5.300 24 Si 0.789 3.211 25 H -0.194 1.194 26 H -0.192 1.192 27 H -0.186 1.186 28 N -0.219 5.219 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.258 0.742 46 H 0.142 0.858 47 H 0.153 0.847 48 H 0.123 0.877 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.473 1.899 -15.790 16.521 hybrid contribution -0.085 0.079 1.547 1.551 sum -4.558 1.978 -14.243 15.085 Atomic orbital electron populations 1.22180 0.94416 1.02072 1.03495 1.21437 0.95156 0.93458 0.86279 1.22149 1.01209 0.95758 1.03022 1.48037 1.46287 1.31195 1.04505 1.22248 0.92108 0.82922 1.04196 1.22591 0.98066 0.94118 0.97709 1.23024 1.00800 0.95631 0.96399 1.22809 0.98211 0.96838 0.99487 1.22777 0.98371 0.96255 0.99263 1.20147 0.82035 0.83280 0.85043 1.90620 1.34070 1.30513 1.86861 1.20878 0.84343 0.86762 0.85067 1.91090 1.29206 1.21524 1.84416 1.43056 1.44112 1.37633 1.03981 1.18984 0.91887 0.92654 0.85221 1.20928 1.11850 1.13245 0.91281 1.20997 0.93315 0.93490 0.97932 1.21831 1.07144 1.08468 0.97377 1.18806 0.91408 0.91289 0.87059 1.19854 1.16088 1.19066 0.94070 0.89915 1.26834 0.99247 0.98972 0.95672 1.70415 1.30278 1.30496 0.98814 0.85437 0.78485 0.78485 0.78714 1.19444 1.19218 1.18609 1.68582 1.09532 1.11820 1.31977 0.92492 0.89389 0.93178 0.86436 0.92501 0.89154 0.93630 0.89126 0.88133 0.93175 0.91827 0.88038 0.89857 0.91485 0.89101 0.94426 0.74225 0.85757 0.84682 0.87667 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.94 71.98 0.64 -2.75 16 2 C 0.14 2.85 3.27 44.99 0.15 3.00 16 3 C -0.16 -3.34 9.23 71.98 0.66 -2.68 16 4 N -0.57 -15.74 2.44 -799.47 -1.95 -17.70 16 5 C 0.11 2.94 4.81 86.38 0.42 3.36 16 6 C -0.11 -2.94 3.07 -10.27 -0.03 -2.97 16 7 C -0.12 -2.43 7.65 31.21 0.24 -2.19 16 8 C -0.14 -2.97 8.09 31.21 0.25 -2.72 16 9 C -0.13 -3.55 7.64 31.12 0.24 -3.32 16 10 C 0.51 17.78 7.06 87.24 0.62 18.40 16 11 O -0.54 -19.27 12.79 -3.25 -0.04 -19.31 16 12 C 0.45 18.85 7.69 87.25 0.67 19.52 16 13 O -0.40 -18.39 8.06 -3.26 -0.03 -18.41 16 14 N -0.64 -26.95 5.37 -309.70 -1.66 -28.61 16 15 C 0.35 17.25 7.41 133.30 0.99 18.23 16 16 C -0.35 -15.40 9.96 22.72 0.23 -15.17 16 17 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 18 C -0.33 -16.28 9.83 22.87 0.22 -16.06 16 19 C 0.24 13.45 6.55 40.20 0.26 13.72 16 20 C -0.46 -25.19 9.14 23.47 0.21 -24.98 16 21 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 22 C 0.02 0.98 5.50 85.29 0.47 1.45 16 23 N -0.68 -35.45 9.11 21.84 0.20 -35.25 16 24 Si 0.97 38.40 29.56 68.60 2.03 40.43 16 25 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 28 N -0.50 -27.71 5.74 -186.42 -1.07 -28.78 16 29 H 0.06 1.51 6.03 -2.38 -0.01 1.50 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 1.74 7.73 -2.38 -0.02 1.72 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 1.20 6.44 -2.39 -0.02 1.19 16 36 H 0.09 3.26 5.43 -2.39 -0.01 3.25 16 37 H 0.10 2.07 7.54 -2.39 -0.02 2.05 16 38 H 0.05 1.78 7.74 -2.39 -0.02 1.76 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.56 7.92 -2.39 -0.02 1.54 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 2.23 8.10 -2.38 -0.02 2.21 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 45 H 0.42 15.28 8.18 -92.71 -0.76 14.52 16 46 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 47 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 48 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 49 H 0.27 13.13 8.29 -92.71 -0.77 12.36 16 Total: -1.00 -65.83 390.92 4.15 -61.68 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: 0.21 Total: 42.34 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 6.47 Total: 3.61 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.49 Total: -110.34 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.07 Total: -37.72 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -65.83 4.15 -61.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890230781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.963 kcal (2) G-P(sol) polarization free energy of solvation -65.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds