Wall clock time and date at job start Wed Apr 1 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 H 1.09000 * 109.46909 * 54.81015 * 3 2 1 5 5 C 1.52999 * 109.46999 * 174.81147 * 3 2 1 6 6 N 1.46906 * 109.47021 * 294.80830 * 3 2 1 7 7 C 1.46896 * 110.99892 * 325.47613 * 6 3 2 8 8 C 1.50703 * 109.47114 * 287.41651 * 7 6 3 9 9 N 1.32417 * 118.52590 * 278.45265 * 8 7 6 10 10 C 1.32399 * 121.51495 * 179.70880 * 9 8 7 11 11 O 1.35282 * 120.88919 * 180.27299 * 10 9 8 12 12 C 1.41410 * 118.21589 * 0.53833 * 10 9 8 13 13 C 1.40012 * 122.12088 * 179.75691 * 12 10 9 14 14 C 1.36340 * 119.49905 * 179.97438 * 13 12 10 15 15 C 1.39243 * 120.90866 * 0.02562 * 14 13 12 16 16 C 1.36294 * 121.04233 * 0.02562 * 15 14 13 17 17 C 1.40176 * 119.58396 * 359.97438 * 16 15 14 18 18 N 1.31149 * 118.52368 * 98.71476 * 8 7 6 19 19 C 1.46908 * 110.99548 * 89.42786 * 6 3 2 20 20 C 1.52999 * 109.46978 * 78.14177 * 19 6 3 21 21 H 1.09003 * 109.47104 * 52.76406 * 20 19 6 22 22 O 1.42894 * 109.47255 * 292.76015 * 20 19 6 23 23 C 1.50703 * 109.46921 * 172.75626 * 20 19 6 24 24 H 1.08000 * 120.00187 * 0.02562 * 23 20 19 25 25 C 1.37880 * 120.00067 * 179.97438 * 23 20 19 26 26 N 1.31508 * 120.00114 * 179.97438 * 25 23 20 27 27 Si 1.86801 * 119.99616 * 0.02562 * 25 23 20 28 28 H 1.48500 * 109.47137 * 90.00083 * 27 25 23 29 29 H 1.48503 * 109.46593 * 209.99640 * 27 25 23 30 30 H 1.48493 * 109.47339 * 329.99687 * 27 25 23 31 31 H 1.08997 * 109.47400 * 307.03557 * 1 2 3 32 32 H 1.09001 * 109.46910 * 67.04122 * 1 2 3 33 33 H 1.09006 * 109.47011 * 187.03573 * 1 2 3 34 34 H 1.09000 * 109.47326 * 239.99943 * 2 1 3 35 35 H 1.08998 * 109.47328 * 120.00457 * 2 1 3 36 36 H 1.09004 * 109.46923 * 186.84324 * 5 3 2 37 37 H 1.08994 * 109.47101 * 306.84349 * 5 3 2 38 38 H 1.08999 * 109.47440 * 66.84881 * 5 3 2 39 39 H 1.09005 * 109.46916 * 167.41843 * 7 6 3 40 40 H 1.08996 * 109.47443 * 47.42109 * 7 6 3 41 41 H 0.96705 * 113.99788 * 270.27587 * 11 10 9 42 42 H 1.08002 * 120.25172 * 0.02562 * 13 12 10 43 43 H 1.08000 * 119.54972 * 179.97438 * 14 13 12 44 44 H 1.08000 * 119.48225 * 179.97438 * 15 14 13 45 45 H 1.08004 * 120.21046 * 179.97438 * 16 15 14 46 46 H 1.08998 * 109.46820 * 198.13899 * 19 6 3 47 47 H 1.08999 * 109.47404 * 318.14280 * 19 6 3 48 48 H 0.96701 * 113.99630 * 301.85304 * 22 20 19 49 49 H 0.96999 * 120.00491 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5644 1.4444 0.1305 6 7 1.6553 2.0978 -1.2572 7 6 1.6786 1.1458 -2.3757 8 6 3.1071 0.8205 -2.7288 9 7 3.7762 1.6648 -3.4987 10 6 5.0354 1.4404 -3.8407 11 8 5.7088 2.3144 -4.6235 12 6 5.6557 0.2597 -3.3706 13 6 6.9814 -0.0612 -3.6863 14 6 7.5264 -1.2138 -3.2034 15 6 6.7827 -2.0756 -2.4016 16 6 5.4896 -1.7929 -2.0767 17 6 4.8970 -0.6163 -2.5558 18 7 3.6299 -0.2889 -2.2641 19 6 0.3377 2.7361 -1.1364 20 6 0.4791 4.0587 -0.3804 21 1 1.2492 4.6675 -0.8541 22 8 0.8468 3.7956 0.9752 23 6 -0.8341 4.7974 -0.4104 24 1 -1.6847 4.3664 -0.9176 25 6 -0.9501 6.0229 0.2106 26 7 -2.0960 6.6677 0.1840 27 14 0.5208 6.7680 1.0884 28 1 1.2955 7.6027 0.1353 29 1 0.0491 7.6122 2.2155 30 1 1.3870 5.6817 1.6124 31 1 -0.3634 0.6189 0.8203 32 1 -0.3633 0.4009 -0.9463 33 1 -0.3633 -1.0200 0.1259 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.9173 2.4685 0.2526 37 1 3.8555 0.8537 0.9990 38 1 4.0065 1.0125 -0.7674 39 1 1.1824 1.5882 -3.2397 40 1 1.1587 0.2326 -2.0864 41 1 5.6283 2.1368 -5.5707 42 1 7.5682 0.5998 -4.3071 43 1 8.5489 -1.4624 -3.4468 44 1 7.2373 -2.9828 -2.0319 45 1 4.9249 -2.4711 -1.4541 46 1 -0.0659 2.9273 -2.1307 47 1 -0.3371 2.0763 -0.5911 48 1 0.2196 3.2339 1.4508 49 1 -2.1778 7.5298 0.6211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929987696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:31 Heat of formation + Delta-G solvation = 14.544798 kcal Electronic energy + Delta-G solvation = -31713.935229 eV Core-core repulsion = 27643.030637 eV Total energy + Delta-G solvation = -4070.904592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.77703 -39.27130 -38.27468 -37.51324 -35.59872 -33.44802 -32.38373 -32.16022 -31.55450 -30.79070 -30.05899 -28.64422 -26.67679 -24.81163 -24.18352 -23.24881 -22.60474 -22.39084 -20.43430 -19.70016 -18.94436 -18.75955 -17.98911 -17.25993 -16.40792 -16.06266 -15.41081 -15.34989 -15.07612 -14.81597 -14.67828 -14.38756 -14.08691 -13.98610 -13.69273 -13.24183 -12.90589 -12.76633 -12.63370 -12.60300 -12.47117 -12.44980 -12.15466 -11.88474 -11.67287 -11.54925 -11.25798 -11.13754 -10.92080 -10.81398 -10.73395 -10.51174 -10.46829 -10.15084 -10.02348 -9.90236 -9.51540 -9.32211 -8.95965 -8.56942 -8.51286 -8.13558 -7.60257 -6.06528 -4.16992 -0.06988 0.47104 1.54221 2.66389 3.06335 3.47365 3.55827 3.65021 3.83446 3.83497 4.09071 4.31832 4.49048 4.52293 4.61604 4.66642 4.85603 5.01161 5.13993 5.19776 5.27353 5.36324 5.42072 5.43371 5.54173 5.63904 5.70086 5.78592 5.83173 5.86180 5.91427 6.00483 6.03583 6.07099 6.10368 6.21403 6.22565 6.29645 6.34730 6.39886 6.49035 6.65447 6.68883 6.82593 6.89856 7.08365 7.33350 7.55232 7.64608 7.82853 8.03986 8.34353 8.88977 9.07979 9.59354 11.04038 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003208 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.617420 B = 8725.885656 C = 9454.125812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.165 4.165 3 C 0.070 3.930 4 H 0.108 0.892 5 C -0.139 4.139 6 N -0.517 5.517 7 C 0.099 3.901 8 C 0.378 3.622 9 N -0.519 5.519 10 C 0.402 3.598 11 O -0.468 6.468 12 C -0.183 4.183 13 C -0.066 4.066 14 C -0.131 4.131 15 C -0.080 4.080 16 C -0.104 4.104 17 C 0.174 3.826 18 N -0.504 5.504 19 C 0.032 3.968 20 C 0.202 3.798 21 H 0.062 0.938 22 O -0.574 6.574 23 C -0.561 4.561 24 H 0.071 0.929 25 C 0.084 3.916 26 N -0.895 5.895 27 Si 0.872 3.128 28 H -0.288 1.288 29 H -0.299 1.299 30 H -0.216 1.216 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.409 0.591 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.133 0.867 45 H 0.141 0.859 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.349 0.651 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.737 -20.310 -8.121 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.204 4.204 3 C -0.038 4.038 4 H 0.126 0.874 5 C -0.197 4.197 6 N -0.241 5.241 7 C -0.031 4.031 8 C 0.110 3.890 9 N -0.243 5.243 10 C 0.201 3.799 11 O -0.276 6.276 12 C -0.189 4.189 13 C -0.087 4.087 14 C -0.149 4.149 15 C -0.101 4.101 16 C -0.123 4.123 17 C 0.047 3.953 18 N -0.220 5.220 19 C -0.095 4.095 20 C 0.145 3.855 21 H 0.080 0.920 22 O -0.380 6.380 23 C -0.598 4.598 24 H 0.089 0.911 25 C -0.120 4.120 26 N -0.533 5.533 27 Si 0.699 3.301 28 H -0.215 1.215 29 H -0.226 1.226 30 H -0.139 1.139 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.269 0.731 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.090 0.910 47 H 0.068 0.932 48 H 0.195 0.805 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.703 -19.029 -7.554 27.066 hybrid contribution 0.397 -0.523 -0.087 0.663 sum 18.101 -19.552 -7.641 27.718 Atomic orbital electron populations 1.22045 0.96258 1.00998 1.02208 1.22394 0.95675 0.98960 1.03374 1.22088 0.95654 0.92458 0.93585 0.87442 1.21920 0.96077 1.01202 1.00519 1.62127 1.30678 1.28882 1.02444 1.21214 0.87235 0.97951 0.96679 1.22903 0.96532 0.83904 0.85653 1.67781 1.08073 1.31988 1.16504 1.19667 0.86700 0.84306 0.89239 1.84662 1.68909 1.52299 1.21736 1.19613 0.97718 0.96647 1.04934 1.20875 0.92842 0.96704 0.98259 1.20961 1.00542 0.94742 0.98620 1.21046 0.93747 0.99281 0.96006 1.20748 0.95271 0.95480 1.00756 1.18911 0.89636 0.94069 0.92706 1.68660 1.11285 1.19620 1.22470 1.23115 0.86941 0.97604 1.01848 1.19781 0.96004 0.90584 0.79139 0.91982 1.86741 1.52193 1.71882 1.27135 1.21493 0.96911 1.04311 1.37132 0.91109 1.24970 0.96011 0.96330 0.94692 1.69957 1.25099 1.14875 1.43330 0.87008 0.84218 0.79537 0.79359 1.21482 1.22555 1.13874 0.92279 0.92341 0.93405 0.89207 0.92373 0.92843 0.93546 0.93329 0.88684 0.90309 0.73137 0.84615 0.85197 0.84941 0.84156 0.90988 0.93194 0.80494 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.03 37.16 0.30 -1.80 16 2 C -0.17 -2.29 4.83 -26.73 -0.13 -2.42 16 3 C 0.07 1.15 2.25 -67.71 -0.15 0.99 16 4 H 0.11 1.92 4.83 -51.93 -0.25 1.67 16 5 C -0.14 -2.31 9.24 37.16 0.34 -1.97 16 6 N -0.52 -9.04 4.26 -228.08 -0.97 -10.01 16 7 C 0.10 1.50 4.66 -4.98 -0.02 1.48 16 8 C 0.38 5.74 5.12 -157.21 -0.81 4.94 16 9 N -0.52 -8.10 10.30 -10.41 -0.11 -8.21 16 10 C 0.40 5.20 7.89 -16.10 -0.13 5.07 16 11 O -0.47 -4.78 12.94 -17.54 -0.23 -5.01 16 12 C -0.18 -2.12 5.75 -106.72 -0.61 -2.74 16 13 C -0.07 -0.56 9.61 -39.60 -0.38 -0.94 16 14 C -0.13 -0.90 9.96 -39.89 -0.40 -1.30 16 15 C -0.08 -0.57 9.95 -39.91 -0.40 -0.96 16 16 C -0.10 -0.99 10.01 -39.55 -0.40 -1.38 16 17 C 0.17 2.16 6.23 -84.85 -0.53 1.63 16 18 N -0.50 -7.01 7.00 -8.80 -0.06 -7.07 16 19 C 0.03 0.61 4.12 -3.82 -0.02 0.59 16 20 C 0.20 4.74 2.53 -27.88 -0.07 4.67 16 21 H 0.06 1.60 7.57 -51.93 -0.39 1.20 16 22 O -0.57 -12.81 7.73 -35.23 -0.27 -13.08 16 23 C -0.56 -15.49 9.35 -34.44 -0.32 -15.81 16 24 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 25 C 0.08 2.44 5.47 -17.82 -0.10 2.35 16 26 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 27 Si 0.87 22.46 26.99 -169.99 -4.59 17.87 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 30 H -0.22 -5.45 5.30 56.52 0.30 -5.15 16 31 H 0.06 0.82 7.78 -51.93 -0.40 0.42 16 32 H 0.06 0.81 5.06 -51.93 -0.26 0.55 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.25 4.10 -51.93 -0.21 1.04 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.80 3.68 -51.93 -0.19 0.61 16 39 H 0.09 1.42 7.65 -51.93 -0.40 1.02 16 40 H 0.08 1.11 4.18 -51.93 -0.22 0.89 16 41 H 0.41 1.84 9.06 45.56 0.41 2.25 16 42 H 0.14 0.86 7.72 -52.49 -0.41 0.46 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 46 H 0.07 1.40 7.58 -51.93 -0.39 1.01 16 47 H 0.05 0.91 4.61 -51.93 -0.24 0.67 16 48 H 0.35 6.89 8.56 45.56 0.39 7.28 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 373.09 15.07 5.62 5.62 Total: -1.00 -34.67 373.09 -8.83 -43.49 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.18 Total: 10.80 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -3.81 Total: -7.62 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -0.37 Total: -52.08 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.50 Total: -18.09 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.59 Total: 17.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.67 -8.83 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929987696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.037 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds