Wall clock time and date at job start Wed Apr 1 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 H 1.09000 * 109.46909 * 54.81015 * 3 2 1 5 5 C 1.52999 * 109.46999 * 174.81147 * 3 2 1 6 6 N 1.46906 * 109.47021 * 294.80830 * 3 2 1 7 7 C 1.46896 * 110.99892 * 325.47613 * 6 3 2 8 8 C 1.50703 * 109.47114 * 287.41651 * 7 6 3 9 9 N 1.32417 * 118.52590 * 278.45265 * 8 7 6 10 10 C 1.32399 * 121.51495 * 179.70880 * 9 8 7 11 11 O 1.35282 * 120.88919 * 180.27299 * 10 9 8 12 12 C 1.41410 * 118.21589 * 0.53833 * 10 9 8 13 13 C 1.40012 * 122.12088 * 179.75691 * 12 10 9 14 14 C 1.36340 * 119.49905 * 179.97438 * 13 12 10 15 15 C 1.39243 * 120.90866 * 0.02562 * 14 13 12 16 16 C 1.36294 * 121.04233 * 0.02562 * 15 14 13 17 17 C 1.40176 * 119.58396 * 359.97438 * 16 15 14 18 18 N 1.31149 * 118.52368 * 98.71476 * 8 7 6 19 19 C 1.46908 * 110.99548 * 89.42786 * 6 3 2 20 20 C 1.52999 * 109.46978 * 78.14177 * 19 6 3 21 21 H 1.09003 * 109.47104 * 52.76406 * 20 19 6 22 22 O 1.42894 * 109.47255 * 292.76015 * 20 19 6 23 23 C 1.50703 * 109.46921 * 172.75626 * 20 19 6 24 24 H 1.08000 * 120.00187 * 0.02562 * 23 20 19 25 25 C 1.37880 * 120.00067 * 179.97438 * 23 20 19 26 26 N 1.31508 * 120.00114 * 179.97438 * 25 23 20 27 27 Si 1.86801 * 119.99616 * 0.02562 * 25 23 20 28 28 H 1.48500 * 109.47137 * 90.00083 * 27 25 23 29 29 H 1.48503 * 109.46593 * 209.99640 * 27 25 23 30 30 H 1.48493 * 109.47339 * 329.99687 * 27 25 23 31 31 H 1.08997 * 109.47400 * 307.03557 * 1 2 3 32 32 H 1.09001 * 109.46910 * 67.04122 * 1 2 3 33 33 H 1.09006 * 109.47011 * 187.03573 * 1 2 3 34 34 H 1.09000 * 109.47326 * 239.99943 * 2 1 3 35 35 H 1.08998 * 109.47328 * 120.00457 * 2 1 3 36 36 H 1.09004 * 109.46923 * 186.84324 * 5 3 2 37 37 H 1.08994 * 109.47101 * 306.84349 * 5 3 2 38 38 H 1.08999 * 109.47440 * 66.84881 * 5 3 2 39 39 H 1.09005 * 109.46916 * 167.41843 * 7 6 3 40 40 H 1.08996 * 109.47443 * 47.42109 * 7 6 3 41 41 H 0.96705 * 113.99788 * 270.27587 * 11 10 9 42 42 H 1.08002 * 120.25172 * 0.02562 * 13 12 10 43 43 H 1.08000 * 119.54972 * 179.97438 * 14 13 12 44 44 H 1.08000 * 119.48225 * 179.97438 * 15 14 13 45 45 H 1.08004 * 120.21046 * 179.97438 * 16 15 14 46 46 H 1.08998 * 109.46820 * 198.13899 * 19 6 3 47 47 H 1.08999 * 109.47404 * 318.14280 * 19 6 3 48 48 H 0.96701 * 113.99630 * 301.85304 * 22 20 19 49 49 H 0.96999 * 120.00491 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9824 0.8399 5 6 3.5644 1.4444 0.1305 6 7 1.6553 2.0978 -1.2572 7 6 1.6786 1.1458 -2.3757 8 6 3.1071 0.8205 -2.7288 9 7 3.7762 1.6648 -3.4987 10 6 5.0354 1.4404 -3.8407 11 8 5.7088 2.3144 -4.6235 12 6 5.6557 0.2597 -3.3706 13 6 6.9814 -0.0612 -3.6863 14 6 7.5264 -1.2138 -3.2034 15 6 6.7827 -2.0756 -2.4016 16 6 5.4896 -1.7929 -2.0767 17 6 4.8970 -0.6163 -2.5558 18 7 3.6299 -0.2889 -2.2641 19 6 0.3377 2.7361 -1.1364 20 6 0.4791 4.0587 -0.3804 21 1 1.2492 4.6675 -0.8541 22 8 0.8468 3.7956 0.9752 23 6 -0.8341 4.7974 -0.4104 24 1 -1.6847 4.3664 -0.9176 25 6 -0.9501 6.0229 0.2106 26 7 -2.0960 6.6677 0.1840 27 14 0.5208 6.7680 1.0884 28 1 1.2955 7.6027 0.1353 29 1 0.0491 7.6122 2.2155 30 1 1.3870 5.6817 1.6124 31 1 -0.3634 0.6189 0.8203 32 1 -0.3633 0.4009 -0.9463 33 1 -0.3633 -1.0200 0.1259 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.9173 2.4685 0.2526 37 1 3.8555 0.8537 0.9990 38 1 4.0065 1.0125 -0.7674 39 1 1.1824 1.5882 -3.2397 40 1 1.1587 0.2326 -2.0864 41 1 5.6283 2.1368 -5.5707 42 1 7.5682 0.5998 -4.3071 43 1 8.5489 -1.4624 -3.4468 44 1 7.2373 -2.9828 -2.0319 45 1 4.9249 -2.4711 -1.4541 46 1 -0.0659 2.9273 -2.1307 47 1 -0.3371 2.0763 -0.5911 48 1 0.2196 3.2339 1.4508 49 1 -2.1778 7.5298 0.6211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929987696.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:30 Heat of formation + Delta-G solvation = -14.051120 kcal Electronic energy + Delta-G solvation = -31715.175241 eV Core-core repulsion = 27643.030637 eV Total energy + Delta-G solvation = -4072.144604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.65660 -40.50672 -39.02600 -38.52171 -37.28541 -34.40801 -34.33879 -33.52565 -32.47035 -31.72068 -31.28368 -30.15128 -28.13201 -25.85200 -25.50169 -24.40454 -23.71447 -23.18574 -22.19639 -20.89391 -19.89011 -19.61975 -19.29448 -18.70770 -17.44345 -17.14499 -16.86796 -16.64802 -16.33970 -16.04509 -15.77860 -15.68775 -15.25606 -15.15573 -15.00103 -14.68494 -14.46344 -14.09902 -13.87456 -13.61410 -13.51793 -13.43008 -13.19773 -13.10347 -13.03881 -12.79695 -12.61088 -12.57647 -12.43295 -12.22990 -11.94220 -11.85364 -11.78986 -11.60390 -11.48067 -11.22723 -11.03896 -10.78627 -10.32976 -10.23668 -9.97388 -9.27179 -8.96917 -8.33366 -6.45803 -0.86165 -0.33005 0.79268 1.39686 1.44153 1.75344 1.88500 2.24154 2.45304 2.70512 2.96705 3.05083 3.23744 3.32156 3.58236 3.79476 3.96928 4.01048 4.07296 4.19499 4.22022 4.24699 4.32688 4.36409 4.44487 4.49942 4.54388 4.61825 4.63439 4.78376 4.83154 4.87538 4.95474 4.97661 5.03488 5.09087 5.15600 5.20980 5.25160 5.32752 5.38599 5.41499 5.46823 5.56097 5.61122 5.71747 6.01660 6.10310 6.25100 6.32963 6.45589 6.66720 7.08259 7.21636 7.37906 8.80657 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015891 B = 0.003208 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.617420 B = 8725.885656 C = 9454.125812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C 0.072 3.928 4 H 0.093 0.907 5 C -0.133 4.133 6 N -0.530 5.530 7 C 0.104 3.896 8 C 0.358 3.642 9 N -0.560 5.560 10 C 0.396 3.604 11 O -0.474 6.474 12 C -0.192 4.192 13 C -0.075 4.075 14 C -0.117 4.117 15 C -0.064 4.064 16 C -0.120 4.120 17 C 0.147 3.853 18 N -0.507 5.507 19 C 0.047 3.953 20 C 0.213 3.787 21 H 0.040 0.960 22 O -0.574 6.574 23 C -0.556 4.556 24 H 0.042 0.958 25 C 0.032 3.968 26 N -0.939 5.939 27 Si 0.934 3.066 28 H -0.293 1.293 29 H -0.297 1.297 30 H -0.207 1.207 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.025 0.975 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.430 0.570 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.149 0.851 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.363 0.637 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.019 -23.144 -7.914 32.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.193 4.193 3 C -0.036 4.036 4 H 0.111 0.889 5 C -0.191 4.191 6 N -0.254 5.254 7 C -0.025 4.025 8 C 0.090 3.910 9 N -0.286 5.286 10 C 0.196 3.804 11 O -0.285 6.285 12 C -0.198 4.198 13 C -0.095 4.095 14 C -0.134 4.134 15 C -0.084 4.084 16 C -0.139 4.139 17 C 0.020 3.980 18 N -0.224 5.224 19 C -0.081 4.081 20 C 0.155 3.845 21 H 0.058 0.942 22 O -0.381 6.381 23 C -0.594 4.594 24 H 0.060 0.940 25 C -0.168 4.168 26 N -0.578 5.578 27 Si 0.760 3.240 28 H -0.221 1.221 29 H -0.224 1.224 30 H -0.129 1.129 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.294 0.706 42 H 0.173 0.827 43 H 0.185 0.815 44 H 0.187 0.813 45 H 0.166 0.834 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.211 0.789 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.007 -21.893 -7.369 31.224 hybrid contribution -0.455 0.216 -0.244 0.559 sum 20.552 -21.678 -7.613 30.827 Atomic orbital electron populations 1.22001 0.95772 1.02042 1.01437 1.22271 0.95937 0.97133 1.03940 1.22031 0.95427 0.93761 0.92404 0.88907 1.21866 0.96215 0.99706 1.01291 1.61954 1.29228 1.30489 1.03768 1.21138 0.88294 0.97636 0.95443 1.22626 0.96395 0.84854 0.87143 1.67687 1.09723 1.33210 1.17944 1.19882 0.86206 0.84933 0.89380 1.84610 1.68333 1.52121 1.23394 1.19794 0.99048 0.96028 1.04924 1.21178 0.91650 0.97907 0.98777 1.21460 1.01979 0.93357 0.96642 1.21527 0.92570 1.00095 0.94251 1.20974 0.96535 0.94862 1.01512 1.19358 0.89420 0.95487 0.93734 1.68578 1.12337 1.18970 1.22497 1.22767 0.88414 0.96045 1.00854 1.19465 0.92786 0.92103 0.80143 0.94222 1.86663 1.52435 1.72454 1.26550 1.21807 0.97791 1.04312 1.35535 0.93960 1.25739 0.98157 0.97067 0.95793 1.70067 1.27030 1.15605 1.45147 0.86053 0.81186 0.78714 0.78059 1.22059 1.22412 1.12907 0.92952 0.93187 0.91433 0.89045 0.91267 0.95534 0.91988 0.93185 0.89312 0.89171 0.70600 0.82655 0.81514 0.81300 0.83363 0.91753 0.91976 0.78911 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 8.03 71.98 0.58 -3.35 16 2 C -0.15 -4.07 4.83 30.59 0.15 -3.92 16 3 C 0.07 2.31 2.25 44.91 0.10 2.41 16 4 H 0.09 3.26 4.83 -2.39 -0.01 3.25 16 5 C -0.13 -4.36 9.24 71.98 0.66 -3.70 16 6 N -0.53 -18.78 4.26 -875.50 -3.73 -22.52 16 7 C 0.10 3.23 4.66 85.56 0.40 3.63 16 8 C 0.36 11.04 5.12 138.76 0.71 11.75 16 9 N -0.56 -17.91 10.30 -299.84 -3.09 -21.00 16 10 C 0.40 10.19 7.89 85.39 0.67 10.86 16 11 O -0.47 -9.40 12.94 -85.67 -1.11 -10.50 16 12 C -0.19 -4.22 5.75 -21.22 -0.12 -4.34 16 13 C -0.07 -1.05 9.61 22.26 0.21 -0.83 16 14 C -0.12 -1.07 9.96 22.07 0.22 -0.85 16 15 C -0.06 -0.63 9.95 22.06 0.22 -0.41 16 16 C -0.12 -1.97 10.01 22.29 0.22 -1.75 16 17 C 0.15 3.46 6.23 40.12 0.25 3.71 16 18 N -0.51 -13.91 7.00 -181.75 -1.27 -15.18 16 19 C 0.05 1.83 4.12 86.30 0.36 2.18 16 20 C 0.21 10.13 2.53 29.85 0.08 10.21 16 21 H 0.04 2.09 7.57 -2.39 -0.02 2.07 16 22 O -0.57 -25.42 7.73 -148.98 -1.15 -26.57 16 23 C -0.56 -31.52 9.35 25.60 0.24 -31.29 16 24 H 0.04 2.59 7.99 -2.91 -0.02 2.57 16 25 C 0.03 1.89 5.47 84.66 0.46 2.36 16 26 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 27 Si 0.93 47.36 26.99 68.60 1.85 49.21 16 28 H -0.29 -15.04 7.11 99.48 0.71 -14.34 16 29 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 30 H -0.21 -10.09 5.30 99.48 0.53 -9.56 16 31 H 0.05 1.39 7.78 -2.39 -0.02 1.37 16 32 H 0.05 1.34 5.06 -2.39 -0.01 1.33 16 33 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.09 2.44 4.10 -2.39 -0.01 2.43 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.65 3.68 -2.39 -0.01 1.64 16 39 H 0.09 2.78 7.65 -2.38 -0.02 2.76 16 40 H 0.09 2.53 4.18 -2.39 -0.01 2.52 16 41 H 0.43 3.53 9.06 -74.05 -0.67 2.86 16 42 H 0.16 1.48 7.72 -2.91 -0.02 1.45 16 43 H 0.17 0.37 8.06 -2.91 -0.02 0.34 16 44 H 0.17 0.46 8.06 -2.91 -0.02 0.43 16 45 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.06 2.59 7.58 -2.39 -0.02 2.58 16 47 H 0.06 2.27 4.61 -2.39 -0.01 2.26 16 48 H 0.36 14.09 8.56 -74.06 -0.63 13.45 16 49 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -77.40 373.09 -3.25 -80.66 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.46 Total: 28.15 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.41 Total: -3.33 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -7.79 Total: -117.62 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -2.26 Total: -37.07 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.85 Total: 49.21 kcal Total: -77.40 -3.25 -80.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929987696.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.606 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds