Wall clock time and date at job start Wed Apr 1 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 N 1.46502 * 109.46773 * 119.99665 * 2 1 3 5 5 C 1.46768 * 124.34588 * 119.95402 * 4 2 1 6 6 C 1.54482 * 105.46939 * 197.03542 * 5 4 2 7 7 H 1.09002 * 110.99688 * 216.45143 * 6 5 4 8 8 N 1.46501 * 110.96679 * 92.70683 * 6 5 4 9 9 C 1.34775 * 119.99674 * 161.16525 * 8 6 5 10 10 O 1.21583 * 120.00575 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99816 * 180.26942 * 9 8 6 12 12 C 1.39945 * 120.00152 * 174.41266 * 11 9 8 13 13 C 1.38867 * 120.06975 * 326.56224 * 12 11 9 14 14 C 1.38111 * 119.92955 * 179.74677 * 13 12 11 15 15 C 1.38282 * 120.06938 * 0.53193 * 14 13 12 16 16 C 1.50706 * 119.92893 * 179.72092 * 15 14 13 17 17 C 1.50694 * 109.47283 * 270.02297 * 16 15 14 18 18 H 1.07997 * 120.00260 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00008 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00240 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47481 * 89.99649 * 21 19 17 23 23 H 1.48495 * 109.47396 * 210.00040 * 21 19 17 24 24 H 1.48505 * 109.46732 * 329.99789 * 21 19 17 25 25 C 1.38273 * 120.14036 * 359.74672 * 15 14 13 26 26 C 1.38110 * 120.07162 * 359.97415 * 25 15 14 27 27 C 1.54628 * 101.76793 * 334.58430 * 6 5 4 28 28 C 1.34420 * 124.35505 * 299.97490 * 4 2 1 29 29 O 1.21285 * 124.93618 * 359.53850 * 28 4 2 30 30 H 1.09001 * 109.47252 * 60.00004 * 1 2 3 31 31 H 1.09005 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47746 * 300.00218 * 1 2 3 33 33 H 1.08994 * 109.47681 * 239.99934 * 2 1 3 34 34 H 1.09006 * 109.46989 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47097 * 299.99418 * 3 2 1 36 36 H 1.08997 * 109.47025 * 60.00030 * 3 2 1 37 37 H 1.09006 * 110.24320 * 78.03978 * 5 4 2 38 38 H 1.08998 * 110.24433 * 316.03955 * 5 4 2 39 39 H 0.96999 * 120.00048 * 341.15827 * 8 6 5 40 40 H 0.97007 * 119.99954 * 354.41810 * 11 9 8 41 41 H 1.07997 * 120.03506 * 0.02647 * 13 12 11 42 42 H 1.08007 * 119.96482 * 180.27810 * 14 13 12 43 43 H 1.09003 * 109.47142 * 30.02820 * 16 15 14 44 44 H 1.08998 * 109.46755 * 150.02396 * 16 15 14 45 45 H 0.97005 * 119.99566 * 179.97438 * 20 19 17 46 46 H 1.08003 * 119.96491 * 179.97438 * 25 15 14 47 47 H 1.08002 * 120.03677 * 179.97438 * 26 25 15 48 48 H 1.09001 * 110.48432 * 143.47632 * 27 6 5 49 49 H 1.09000 * 110.48666 * 266.12392 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8646 -1.8894 1.1728 6 6 2.7596 -2.4957 2.5898 7 1 3.7122 -2.9226 2.9036 8 7 1.6927 -3.4976 2.6535 9 6 1.6761 -4.4016 3.6530 10 8 2.5467 -4.3860 4.5015 11 7 0.6976 -5.3268 3.7085 12 6 0.7436 -6.3366 4.6763 13 6 1.9664 -6.8465 5.0923 14 6 2.0086 -7.8394 6.0514 15 6 0.8344 -8.3335 6.5893 16 6 0.8840 -9.4214 7.6311 17 6 0.8456 -10.7672 6.9543 18 1 0.7913 -10.8288 5.8774 19 6 0.8810 -11.9200 7.7097 20 7 0.9476 -11.8451 9.0210 21 14 0.8342 -13.5884 6.8707 22 1 2.2200 -14.0341 6.5774 23 1 0.1761 -14.5741 7.7654 24 1 0.0692 -13.4832 5.6023 25 6 -0.3850 -7.8320 6.1730 26 6 -0.4338 -6.8350 5.2185 27 6 2.4035 -1.2533 3.4388 28 6 1.7483 -0.3080 2.4563 29 8 1.0775 0.6554 2.7610 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.8974 -1.6176 0.9545 38 1 2.4952 -2.5975 0.4311 39 1 0.9982 -3.5103 1.9764 40 1 -0.0385 -5.2928 3.0776 41 1 2.8836 -6.4639 4.6697 42 1 2.9596 -8.2333 6.3787 43 1 1.8046 -9.3307 8.2077 44 1 0.0269 -9.3254 8.2976 45 1 0.9721 -12.6562 9.5525 46 1 -1.3003 -8.2202 6.5947 47 1 -1.3866 -6.4440 4.8934 48 1 1.7068 -1.5211 4.2332 49 1 3.3053 -0.8051 3.8560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932576863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:06 Heat of formation + Delta-G solvation = -38.492631 kcal Electronic energy + Delta-G solvation = -29234.962596 eV Core-core repulsion = 25161.758129 eV Total energy + Delta-G solvation = -4073.204467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32901 -40.29705 -38.41012 -36.96999 -35.98000 -34.83241 -33.52313 -32.85891 -30.55903 -30.26989 -29.63034 -27.95731 -27.66185 -26.48158 -23.59272 -22.95790 -22.44663 -22.17888 -21.13876 -20.18961 -19.31360 -18.62299 -17.64770 -17.19308 -16.72364 -16.28076 -15.87590 -15.55634 -15.11670 -14.89191 -14.73943 -14.52133 -14.20937 -14.15551 -14.06083 -13.93400 -13.42699 -13.30524 -13.02830 -12.81021 -12.66909 -12.58685 -12.39847 -12.15846 -12.05320 -12.00966 -11.76125 -11.63592 -11.38171 -11.26810 -10.83862 -10.60330 -10.41963 -10.22969 -10.09666 -9.90804 -9.49712 -9.43337 -9.25373 -9.21643 -8.40805 -8.26925 -7.35182 -6.02019 -4.06072 1.93623 2.08215 2.22055 2.37202 2.45993 3.06510 3.31128 3.37381 3.41117 3.80632 3.93417 3.95080 4.31109 4.39818 4.44605 4.52318 4.58717 4.65996 4.71590 4.88003 5.04702 5.16249 5.17044 5.27114 5.30668 5.31972 5.38026 5.44054 5.49278 5.57918 5.72617 5.77854 5.93168 6.00200 6.05510 6.13592 6.16219 6.22084 6.50023 6.66737 6.67103 6.93129 7.00589 7.19090 7.23350 7.54001 7.73310 7.77569 7.79427 7.89300 7.93770 8.34408 8.40689 8.99304 9.57526 11.07500 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030701 B = 0.001705 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.792316 B =16416.563162 C =16501.540783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.153 3.847 3 C -0.168 4.168 4 N -0.621 5.621 5 C 0.096 3.904 6 C 0.157 3.843 7 H 0.120 0.880 8 N -0.740 5.740 9 C 0.704 3.296 10 O -0.566 6.566 11 N -0.680 5.680 12 C 0.122 3.878 13 C -0.116 4.116 14 C -0.107 4.107 15 C -0.044 4.044 16 C 0.047 3.953 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.107 4.107 26 C -0.145 4.145 27 C -0.170 4.170 28 C 0.521 3.479 29 O -0.526 6.526 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.397 0.603 40 H 0.401 0.599 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.122 0.878 47 H 0.113 0.887 48 H 0.108 0.892 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 23.636 -21.597 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.051 3.949 3 C -0.226 4.226 4 N -0.357 5.357 5 C -0.028 4.028 6 C 0.050 3.950 7 H 0.138 0.862 8 N -0.396 5.396 9 C 0.404 3.596 10 O -0.442 6.442 11 N -0.326 5.326 12 C 0.029 3.971 13 C -0.136 4.136 14 C -0.126 4.126 15 C -0.044 4.044 16 C 0.011 3.989 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.126 4.126 26 C -0.165 4.165 27 C -0.212 4.212 28 C 0.309 3.691 29 O -0.402 6.402 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.231 0.769 40 H 0.235 0.765 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.140 0.860 47 H 0.131 0.869 48 H 0.126 0.874 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.458 24.121 -20.596 31.813 hybrid contribution -0.747 -0.992 -1.138 1.685 sum 1.710 23.128 -21.734 31.784 Atomic orbital electron populations 1.22189 0.94595 1.02406 1.03446 1.20951 0.94522 0.93201 0.86248 1.22186 1.01271 0.95751 1.03419 1.48507 1.51512 1.29317 1.06344 1.22426 0.96211 0.86820 0.97293 1.21622 0.92404 0.87278 0.93702 0.86226 1.45103 1.30867 1.33884 1.29775 1.15877 0.82711 0.78994 0.81986 1.90981 1.38769 1.74607 1.39829 1.42465 1.26240 1.28383 1.35552 1.17269 0.94537 0.91347 0.93927 1.20987 0.96467 0.96848 0.99326 1.20992 0.98732 0.96112 0.96748 1.20705 0.91874 0.94978 0.96881 1.18351 0.98404 0.90321 0.91861 1.21069 1.50747 0.89888 0.93199 0.92465 1.25015 0.95261 0.99261 0.94837 1.69962 1.50431 1.28522 1.04372 0.86544 0.78194 0.83644 0.79351 1.20622 1.21200 1.19854 1.20865 0.98320 0.96266 0.97132 1.20706 0.95829 1.00595 0.99420 1.22885 1.03820 0.95568 0.98882 1.20894 0.79613 0.84937 0.83651 1.90708 1.39350 1.28702 1.81441 0.91396 0.92492 0.90950 0.89410 0.92451 0.91437 0.90929 0.89177 0.89468 0.76908 0.76460 0.85755 0.86105 0.95286 0.95317 0.92872 0.86025 0.86904 0.87393 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 9.20 37.15 0.34 -0.65 16 2 C 0.15 0.81 3.48 -67.93 -0.24 0.57 16 3 C -0.17 -0.98 9.20 37.16 0.34 -0.64 16 4 N -0.62 -3.77 2.83 -164.84 -0.47 -4.24 16 5 C 0.10 0.36 6.92 -3.12 -0.02 0.34 16 6 C 0.16 0.98 3.43 -66.30 -0.23 0.75 16 7 H 0.12 0.81 7.72 -51.93 -0.40 0.40 16 8 N -0.74 -5.45 5.16 -57.08 -0.29 -5.74 16 9 C 0.70 8.43 8.30 -86.92 -0.72 7.71 16 10 O -0.57 -9.10 13.78 5.29 0.07 -9.03 16 11 N -0.68 -8.00 5.35 -14.22 -0.08 -8.08 16 12 C 0.12 1.95 6.28 -83.69 -0.53 1.43 16 13 C -0.12 -2.10 8.65 -39.40 -0.34 -2.44 16 14 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 15 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 16 C 0.05 1.22 5.10 -29.04 -0.15 1.08 16 17 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.11 -2.06 9.69 -39.62 -0.38 -2.44 16 26 C -0.14 -2.34 9.96 -39.39 -0.39 -2.73 16 27 C -0.17 -1.34 6.58 -26.75 -0.18 -1.52 16 28 C 0.52 4.78 7.41 -10.86 -0.08 4.70 16 29 O -0.53 -6.86 15.12 5.55 0.08 -6.77 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.63 6.80 -51.93 -0.35 0.28 16 33 H 0.09 0.28 8.07 -51.93 -0.42 -0.14 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.62 6.77 -51.93 -0.35 0.27 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 0.20 8.03 -51.93 -0.42 -0.21 16 39 H 0.40 1.96 8.59 -40.82 -0.35 1.61 16 40 H 0.40 3.27 8.83 -40.82 -0.36 2.91 16 41 H 0.12 2.21 6.42 -52.49 -0.34 1.87 16 42 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.11 1.09 8.09 -51.93 -0.42 0.67 16 49 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -35.23 404.47 -10.36 -45.59 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.60 Total: 2.34 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.89 Total: -10.92 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.10 Total: -43.74 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.16 Total: -15.80 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.23 -10.36 -45.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds