Wall clock time and date at job start Wed Apr 1 2020 03:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 N 1.46502 * 109.46773 * 119.99665 * 2 1 3 5 5 C 1.46768 * 124.34588 * 119.95402 * 4 2 1 6 6 C 1.54482 * 105.46939 * 197.03542 * 5 4 2 7 7 H 1.09002 * 110.99688 * 216.45143 * 6 5 4 8 8 N 1.46501 * 110.96679 * 92.70683 * 6 5 4 9 9 C 1.34775 * 119.99674 * 161.16525 * 8 6 5 10 10 O 1.21583 * 120.00575 * 359.97438 * 9 8 6 11 11 N 1.34775 * 119.99816 * 180.26942 * 9 8 6 12 12 C 1.39945 * 120.00152 * 174.41266 * 11 9 8 13 13 C 1.38867 * 120.06975 * 326.56224 * 12 11 9 14 14 C 1.38111 * 119.92955 * 179.74677 * 13 12 11 15 15 C 1.38282 * 120.06938 * 0.53193 * 14 13 12 16 16 C 1.50706 * 119.92893 * 179.72092 * 15 14 13 17 17 C 1.50694 * 109.47283 * 270.02297 * 16 15 14 18 18 H 1.07997 * 120.00260 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00008 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99921 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00240 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47481 * 89.99649 * 21 19 17 23 23 H 1.48495 * 109.47396 * 210.00040 * 21 19 17 24 24 H 1.48505 * 109.46732 * 329.99789 * 21 19 17 25 25 C 1.38273 * 120.14036 * 359.74672 * 15 14 13 26 26 C 1.38110 * 120.07162 * 359.97415 * 25 15 14 27 27 C 1.54628 * 101.76793 * 334.58430 * 6 5 4 28 28 C 1.34420 * 124.35505 * 299.97490 * 4 2 1 29 29 O 1.21285 * 124.93618 * 359.53850 * 28 4 2 30 30 H 1.09001 * 109.47252 * 60.00004 * 1 2 3 31 31 H 1.09005 * 109.47424 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47746 * 300.00218 * 1 2 3 33 33 H 1.08994 * 109.47681 * 239.99934 * 2 1 3 34 34 H 1.09006 * 109.46989 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47097 * 299.99418 * 3 2 1 36 36 H 1.08997 * 109.47025 * 60.00030 * 3 2 1 37 37 H 1.09006 * 110.24320 * 78.03978 * 5 4 2 38 38 H 1.08998 * 110.24433 * 316.03955 * 5 4 2 39 39 H 0.96999 * 120.00048 * 341.15827 * 8 6 5 40 40 H 0.97007 * 119.99954 * 354.41810 * 11 9 8 41 41 H 1.07997 * 120.03506 * 0.02647 * 13 12 11 42 42 H 1.08007 * 119.96482 * 180.27810 * 14 13 12 43 43 H 1.09003 * 109.47142 * 30.02820 * 16 15 14 44 44 H 1.08998 * 109.46755 * 150.02396 * 16 15 14 45 45 H 0.97005 * 119.99566 * 179.97438 * 20 19 17 46 46 H 1.08003 * 119.96491 * 179.97438 * 25 15 14 47 47 H 1.08002 * 120.03677 * 179.97438 * 26 25 15 48 48 H 1.09001 * 110.48432 * 143.47632 * 27 6 5 49 49 H 1.09000 * 110.48666 * 266.12392 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.8646 -1.8894 1.1728 6 6 2.7596 -2.4957 2.5898 7 1 3.7122 -2.9226 2.9036 8 7 1.6927 -3.4976 2.6535 9 6 1.6761 -4.4016 3.6530 10 8 2.5467 -4.3860 4.5015 11 7 0.6976 -5.3268 3.7085 12 6 0.7436 -6.3366 4.6763 13 6 1.9664 -6.8465 5.0923 14 6 2.0086 -7.8394 6.0514 15 6 0.8344 -8.3335 6.5893 16 6 0.8840 -9.4214 7.6311 17 6 0.8456 -10.7672 6.9543 18 1 0.7913 -10.8288 5.8774 19 6 0.8810 -11.9200 7.7097 20 7 0.9476 -11.8451 9.0210 21 14 0.8342 -13.5884 6.8707 22 1 2.2200 -14.0341 6.5774 23 1 0.1761 -14.5741 7.7654 24 1 0.0692 -13.4832 5.6023 25 6 -0.3850 -7.8320 6.1730 26 6 -0.4338 -6.8350 5.2185 27 6 2.4035 -1.2533 3.4388 28 6 1.7483 -0.3080 2.4563 29 8 1.0775 0.6554 2.7610 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3635 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.8974 -1.6176 0.9545 38 1 2.4952 -2.5975 0.4311 39 1 0.9982 -3.5103 1.9764 40 1 -0.0385 -5.2928 3.0776 41 1 2.8836 -6.4639 4.6697 42 1 2.9596 -8.2333 6.3787 43 1 1.8046 -9.3307 8.2077 44 1 0.0269 -9.3254 8.2976 45 1 0.9721 -12.6562 9.5525 46 1 -1.3003 -8.2202 6.5947 47 1 -1.3866 -6.4440 4.8934 48 1 1.7068 -1.5211 4.2332 49 1 3.3053 -0.8051 3.8560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932576863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:05 Heat of formation + Delta-G solvation = -61.831445 kcal Electronic energy + Delta-G solvation = -29235.974643 eV Core-core repulsion = 25161.758129 eV Total energy + Delta-G solvation = -4074.216514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.04405 -41.25817 -39.71015 -37.75023 -36.63916 -36.09310 -35.00562 -34.06100 -32.08521 -31.72653 -30.38288 -28.70500 -28.10913 -28.02042 -25.24070 -23.85449 -23.46182 -23.19497 -22.07267 -21.58280 -19.96524 -19.51915 -18.65567 -18.46965 -17.77413 -17.48478 -16.80046 -16.66784 -16.31992 -15.95492 -15.89182 -15.64849 -15.17369 -15.10257 -14.67558 -14.59057 -14.55847 -14.49696 -14.24150 -14.07895 -13.70497 -13.61722 -13.25669 -13.22373 -13.11734 -12.89616 -12.76362 -12.60339 -12.52741 -12.42894 -12.20592 -12.10247 -12.02594 -11.65990 -11.53349 -11.26372 -10.89933 -10.78596 -10.58263 -10.19340 -9.74672 -9.72030 -8.79724 -8.15693 -6.30800 0.52200 0.61655 1.41462 1.42781 1.48477 1.54168 1.57009 1.96172 2.06946 2.42188 3.05742 3.12678 3.13222 3.31297 3.43071 3.77719 3.99248 4.08217 4.11567 4.19124 4.20927 4.32671 4.42174 4.57053 4.58505 4.64272 4.68912 4.71708 4.73410 4.75843 4.79624 4.87495 4.90643 4.91946 5.15752 5.25496 5.31189 5.32259 5.35838 5.40428 5.45102 5.53079 5.65701 5.68696 5.78457 5.94400 6.11839 6.12613 6.15976 6.29600 6.82134 6.96082 7.15533 7.37630 7.48006 8.91937 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030701 B = 0.001705 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.792316 B =16416.563162 C =16501.540783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.611 5.611 5 C 0.103 3.897 6 C 0.157 3.843 7 H 0.120 0.880 8 N -0.718 5.718 9 C 0.702 3.298 10 O -0.608 6.608 11 N -0.668 5.668 12 C 0.141 3.859 13 C -0.120 4.120 14 C -0.119 4.119 15 C -0.078 4.078 16 C 0.056 3.944 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.967 3.033 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.263 1.263 25 C -0.113 4.113 26 C -0.132 4.132 27 C -0.169 4.169 28 C 0.515 3.485 29 O -0.574 6.574 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.124 0.876 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.413 0.587 40 H 0.423 0.577 41 H 0.128 0.872 42 H 0.110 0.890 43 H -0.001 1.001 44 H 0.005 0.995 45 H 0.265 0.735 46 H 0.124 0.876 47 H 0.156 0.844 48 H 0.083 0.917 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 23.894 -25.853 35.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 C -0.224 4.224 4 N -0.345 5.345 5 C -0.019 4.019 6 C 0.051 3.949 7 H 0.138 0.862 8 N -0.374 5.374 9 C 0.403 3.597 10 O -0.487 6.487 11 N -0.317 5.317 12 C 0.046 3.954 13 C -0.141 4.141 14 C -0.138 4.138 15 C -0.079 4.079 16 C 0.019 3.981 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.791 3.209 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.187 1.187 25 C -0.132 4.132 26 C -0.152 4.152 27 C -0.210 4.210 28 C 0.303 3.697 29 O -0.454 6.454 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.142 0.858 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.250 0.750 40 H 0.261 0.739 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.017 0.983 44 H 0.023 0.977 45 H 0.073 0.927 46 H 0.142 0.858 47 H 0.173 0.827 48 H 0.101 0.899 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.216 24.400 -24.949 34.967 hybrid contribution -0.661 -0.900 0.122 1.123 sum 1.555 23.501 -24.827 34.221 Atomic orbital electron populations 1.22158 0.95187 1.02572 1.02424 1.21162 0.94108 0.93139 0.86869 1.22155 1.01545 0.96181 1.02471 1.48584 1.50792 1.29557 1.05598 1.22623 0.97397 0.86027 0.95892 1.21747 0.91787 0.86138 0.95251 0.86178 1.44940 1.31379 1.32557 1.28562 1.16043 0.81999 0.79401 0.82279 1.90969 1.40330 1.75750 1.41655 1.42274 1.27126 1.27276 1.35024 1.17302 0.93645 0.91008 0.93431 1.21010 0.97774 0.96326 0.98951 1.20918 0.97825 0.97213 0.97828 1.20387 0.93866 0.95795 0.97848 1.18091 0.95710 0.91791 0.92459 1.21399 1.50588 0.91162 0.93296 0.92495 1.25959 0.94659 1.03504 0.95452 1.70096 1.51329 1.29754 1.05976 0.85417 0.78537 0.78406 0.78516 1.19866 1.20562 1.18739 1.20941 0.97190 0.97087 0.97990 1.20980 0.97674 0.98907 0.97644 1.22844 1.03466 0.96347 0.98366 1.21086 0.79197 0.84456 0.84942 1.90688 1.41612 1.30764 1.82363 0.89912 0.91673 0.94490 0.85793 0.91889 0.89894 0.94374 0.86546 0.86595 0.74972 0.73867 0.85400 0.87196 0.98295 0.97677 0.92650 0.85837 0.82660 0.89882 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.20 71.98 0.66 -0.96 16 2 C 0.15 1.12 3.48 44.99 0.16 1.27 16 3 C -0.17 -1.65 9.20 71.98 0.66 -0.99 16 4 N -0.61 -5.74 2.83 -794.02 -2.25 -7.99 16 5 C 0.10 0.33 6.92 86.83 0.60 0.93 16 6 C 0.16 1.53 3.43 46.05 0.16 1.69 16 7 H 0.12 1.30 7.72 -2.39 -0.02 1.28 16 8 N -0.72 -8.28 5.16 -452.76 -2.34 -10.62 16 9 C 0.70 15.06 8.30 179.06 1.49 16.55 16 10 O -0.61 -18.79 13.78 -3.98 -0.05 -18.84 16 11 N -0.67 -13.55 5.35 -317.18 -1.70 -15.24 16 12 C 0.14 4.19 6.28 38.15 0.24 4.43 16 13 C -0.12 -4.29 8.65 22.39 0.19 -4.10 16 14 C -0.12 -4.99 9.69 22.25 0.22 -4.77 16 15 C -0.08 -3.55 5.07 -19.84 -0.10 -3.65 16 16 C 0.06 3.10 5.10 29.10 0.15 3.25 16 17 C -0.53 -30.37 9.09 25.60 0.23 -30.14 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 19 C 0.00 0.12 5.46 84.65 0.46 0.59 16 20 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 21 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 C -0.11 -4.33 9.69 22.25 0.22 -4.11 16 26 C -0.13 -3.91 9.96 22.39 0.22 -3.69 16 27 C -0.17 -2.52 6.58 30.59 0.20 -2.32 16 28 C 0.51 9.07 7.41 87.90 0.65 9.72 16 29 O -0.57 -15.53 15.12 -3.05 -0.05 -15.58 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.50 16 32 H 0.04 0.64 6.80 -2.38 -0.02 0.63 16 33 H 0.12 0.13 8.07 -2.39 -0.02 0.11 16 34 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 0.66 6.77 -2.39 -0.02 0.65 16 37 H 0.12 -0.07 8.14 -2.38 -0.02 -0.09 16 38 H 0.12 -0.17 8.03 -2.39 -0.02 -0.18 16 39 H 0.41 2.30 8.59 -92.71 -0.80 1.51 16 40 H 0.42 4.99 8.83 -92.70 -0.82 4.17 16 41 H 0.13 4.48 6.42 -2.91 -0.02 4.46 16 42 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 43 H 0.00 -0.08 8.08 -2.39 -0.02 -0.09 16 44 H 0.00 0.29 8.08 -2.39 -0.02 0.27 16 45 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 46 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 47 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 48 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 49 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -82.45 404.47 1.69 -80.75 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.64 Total: 13.92 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 6.41 Total: -16.30 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -6.00 Total: -90.37 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.10 Total: -34.42 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -82.45 1.69 -80.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.920 kcal (2) G-P(sol) polarization free energy of solvation -82.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds