Wall clock time and date at job start Wed Apr 1 2020 03:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47025 * 2 1 4 4 H 1.08994 * 109.47541 * 305.00273 * 3 2 1 5 5 C 1.53001 * 109.46956 * 185.00295 * 3 2 1 6 6 O 1.42907 * 109.47021 * 65.00766 * 3 2 1 7 7 C 1.35680 * 116.99828 * 209.99924 * 6 3 2 8 8 C 1.38899 * 119.62237 * 179.97438 * 7 6 3 9 9 C 1.39571 * 118.94819 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.89356 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99809 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99654 * 180.02562 * 12 10 9 14 14 H 1.09000 * 115.51777 * 9.58368 * 13 12 10 15 15 C 1.53005 * 117.44048 * 224.24163 * 13 12 10 16 16 H 1.09002 * 119.54133 * 4.11599 * 15 13 12 17 17 C 1.54388 * 118.11953 * 160.80812 * 15 13 12 18 18 N 1.48147 * 104.61527 * 87.19121 * 17 15 13 19 19 C 1.36944 * 127.83511 * 140.41382 * 18 17 15 20 20 H 1.07995 * 120.00220 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99397 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99395 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00014 * 23 21 19 25 25 H 1.48500 * 109.46990 * 209.99586 * 23 21 19 26 26 H 1.48495 * 109.47348 * 329.99414 * 23 21 19 27 27 C 1.51827 * 104.55132 * 320.13659 * 18 17 15 28 28 C 1.53001 * 117.44125 * 155.00283 * 13 12 10 29 29 H 1.09002 * 119.53987 * 355.87867 * 28 13 12 30 30 C 1.39973 * 118.21478 * 0.27504 * 9 8 7 31 31 C 1.37975 * 119.13372 * 359.47986 * 30 9 8 32 32 N 1.31911 * 120.97896 * 0.53067 * 31 30 9 33 33 H 1.08998 * 109.47384 * 59.99107 * 1 2 3 34 34 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46776 * 299.99433 * 1 2 3 36 36 H 1.09003 * 109.46776 * 240.00567 * 2 1 3 37 37 H 1.08998 * 109.47384 * 120.00893 * 2 1 3 38 38 H 1.08999 * 109.46993 * 60.00165 * 5 3 2 39 39 H 1.09000 * 109.47449 * 180.02562 * 5 3 2 40 40 H 1.09002 * 109.47278 * 300.00264 * 5 3 2 41 41 H 1.08001 * 120.52494 * 0.02562 * 8 7 6 42 42 H 0.96999 * 120.00304 * 0.02562 * 12 10 9 43 43 H 1.09005 * 110.40063 * 205.97149 * 17 15 13 44 44 H 1.08991 * 110.41105 * 328.40677 * 17 15 13 45 45 H 0.96998 * 120.00080 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.21952 * 281.99947 * 27 18 17 47 47 H 1.09001 * 112.25708 * 158.41268 * 27 18 17 48 48 H 1.07997 * 120.43201 * 179.71670 * 30 9 8 49 49 H 1.08003 * 119.51461 * 180.27253 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1258 6 8 1.6621 2.0813 1.2212 7 6 1.4507 3.4208 1.1758 8 6 1.0807 4.0969 2.3314 9 6 0.8674 5.4748 2.2688 10 6 0.4710 6.2387 3.4748 11 8 0.3279 5.6660 4.5369 12 7 0.2691 7.5688 3.3938 13 6 -0.1223 8.3242 4.5864 14 1 -0.0718 7.7759 5.5271 15 6 -1.2416 9.3558 4.4318 16 1 -1.7554 9.4520 3.4753 17 6 -1.9757 9.8294 5.7047 18 7 -1.1602 10.9592 6.2081 19 6 -1.6006 12.1366 6.7514 20 1 -2.6597 12.3225 6.8510 21 6 -0.6855 13.0915 7.1730 22 7 0.6053 12.8651 7.0510 23 14 -1.2863 14.6973 7.9147 24 1 -1.4260 14.5418 9.3849 25 1 -0.3072 15.7747 7.6218 26 1 -2.6031 15.0519 7.3270 27 6 0.2766 10.5177 5.9938 28 6 0.2192 9.8153 4.6202 29 1 0.7935 10.2537 3.8040 30 6 1.0317 6.1145 1.0347 31 6 1.4061 5.3686 -0.0640 32 7 1.5993 4.0673 0.0326 33 1 -0.3634 0.5140 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8901 36 1 1.8933 -0.5138 -0.8901 37 1 1.8934 -0.5140 0.8899 38 1 3.8531 0.9570 -1.0572 39 1 3.9283 2.4719 -0.1253 40 1 3.9995 0.9052 0.7160 41 1 0.9608 3.5650 3.2636 42 1 0.3830 8.0259 2.5458 43 1 -2.9826 10.1672 5.4593 44 1 -2.0119 9.0283 6.4429 45 1 1.2446 13.5323 7.3460 46 1 0.5736 9.8120 6.7695 47 1 0.9670 11.3606 5.9611 48 1 0.8713 7.1787 0.9446 49 1 1.5390 5.8567 -1.0182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962237718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:17 Heat of formation + Delta-G solvation = 25.379141 kcal Electronic energy + Delta-G solvation = -29003.309183 eV Core-core repulsion = 24932.874404 eV Total energy + Delta-G solvation = -4070.434779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19466 -39.88622 -38.68965 -38.00627 -34.71398 -34.46726 -33.18709 -32.40884 -30.85969 -30.19371 -30.02981 -27.09124 -26.10035 -25.10035 -24.26650 -23.56610 -22.29559 -21.33919 -20.63852 -20.29164 -19.25058 -18.83996 -17.55056 -17.03568 -16.75009 -16.15308 -15.96492 -15.91337 -15.10509 -14.97088 -14.68868 -14.58718 -14.35145 -14.09144 -14.04987 -13.61349 -13.54262 -13.31097 -12.95880 -12.75579 -12.36693 -12.32266 -12.19120 -12.14357 -11.56543 -11.51632 -11.37930 -11.16995 -11.13795 -11.03624 -10.87045 -10.42078 -10.33801 -10.24395 -10.20790 -10.08173 -9.87076 -9.70164 -9.23906 -8.86926 -8.84194 -8.43384 -6.95349 -5.69050 -3.13124 0.40230 0.79676 2.51579 2.69452 3.01410 3.38397 3.43081 3.44906 3.52137 3.88814 4.26040 4.30404 4.32587 4.44924 4.53126 4.58906 4.64637 4.67590 4.77908 4.96783 5.11116 5.13581 5.18381 5.29552 5.32290 5.35752 5.37593 5.40754 5.52999 5.54468 5.55474 5.65082 5.71815 5.75987 5.76930 5.86587 5.88948 6.00854 6.07005 6.20902 6.50232 6.64224 6.73426 6.85153 6.92225 7.28640 7.40498 7.44520 7.51970 7.76274 8.06957 8.24442 9.09630 9.73882 10.44648 11.34443 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.001664 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.746987 B =16821.339508 C =17032.638310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.170 4.170 6 O -0.296 6.296 7 C 0.324 3.676 8 C -0.134 4.134 9 C -0.046 4.046 10 C 0.559 3.441 11 O -0.524 6.524 12 N -0.686 5.686 13 C 0.089 3.911 14 H 0.133 0.867 15 C -0.183 4.183 16 H 0.103 0.897 17 C 0.160 3.840 18 N -0.601 5.601 19 C -0.215 4.215 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.155 3.845 28 C -0.169 4.169 29 H 0.103 0.897 30 C -0.184 4.184 31 C 0.139 3.861 32 N -0.528 5.528 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.155 0.845 42 H 0.400 0.600 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.254 0.746 46 H 0.019 0.981 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -21.623 -19.157 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.109 0.891 5 C -0.227 4.227 6 O -0.203 6.203 7 C 0.144 3.856 8 C -0.156 4.156 9 C -0.057 4.057 10 C 0.344 3.656 11 O -0.400 6.400 12 N -0.334 5.334 13 C -0.016 4.016 14 H 0.150 0.850 15 C -0.205 4.205 16 H 0.121 0.879 17 C 0.033 3.967 18 N -0.325 5.325 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.209 4.209 22 N -0.572 5.572 23 Si 0.749 3.251 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.031 3.969 28 C -0.190 4.190 29 H 0.121 0.879 30 C -0.205 4.205 31 C -0.016 4.016 32 N -0.253 5.253 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.172 0.828 42 H 0.235 0.765 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.993 -22.437 -18.759 29.518 hybrid contribution -0.393 1.554 0.225 1.619 sum 3.600 -20.883 -18.535 28.153 Atomic orbital electron populations 1.21767 0.95135 1.01914 1.02366 1.21697 0.96864 0.94172 1.03195 1.22452 0.95303 0.93164 0.86201 0.89149 1.22222 0.94953 1.02985 1.02548 1.86318 1.82234 1.15715 1.36058 1.19626 0.91746 0.84888 0.89297 1.21143 1.02432 0.93086 0.98926 1.20166 0.98066 0.93480 0.94000 1.18021 0.77746 0.82076 0.87715 1.90801 1.50647 1.69168 1.29363 1.45279 1.68492 1.07065 1.12584 1.22006 1.01938 0.88741 0.88911 0.84957 1.24405 0.92412 1.02462 1.01206 0.87889 1.21084 0.94097 0.90580 0.90928 1.46133 1.00692 1.14559 1.71115 1.19118 0.92168 0.91132 1.31870 0.90209 1.24759 0.95283 0.98940 1.01923 1.69471 0.99903 1.34666 1.53149 0.86009 0.77455 0.82753 0.78906 1.21600 1.21636 1.20716 1.22574 0.88679 0.98242 0.87399 1.24661 0.98057 0.92583 1.03704 0.87934 1.22173 1.03701 1.01799 0.92820 1.22361 0.92900 0.87707 0.98677 1.67143 1.19850 1.11730 1.26548 0.92781 0.92384 0.92076 0.89990 0.90837 0.91052 0.91912 0.91882 0.82774 0.76512 0.92957 0.95471 0.93543 0.96335 0.84541 0.84021 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.81 37.16 0.36 -0.66 16 2 C -0.12 -0.76 5.64 -26.73 -0.15 -0.91 16 3 C 0.08 0.67 2.49 -26.73 -0.07 0.61 16 4 H 0.09 0.75 6.98 -51.93 -0.36 0.39 16 5 C -0.17 -1.18 9.53 37.16 0.35 -0.83 16 6 O -0.30 -3.08 9.30 -18.74 -0.17 -3.25 16 7 C 0.32 3.55 7.45 -17.16 -0.13 3.42 16 8 C -0.13 -1.58 9.61 -38.84 -0.37 -1.95 16 9 C -0.05 -0.53 5.91 -104.68 -0.62 -1.15 16 10 C 0.56 7.96 7.80 -12.19 -0.10 7.87 16 11 O -0.52 -9.42 16.01 5.35 0.09 -9.34 16 12 N -0.69 -9.05 5.52 -54.65 -0.30 -9.35 16 13 C 0.09 1.48 5.96 -67.92 -0.41 1.08 16 14 H 0.13 2.48 7.40 -51.93 -0.38 2.09 16 15 C -0.18 -3.23 7.06 -89.22 -0.63 -3.86 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.16 3.33 7.05 -2.41 -0.02 3.32 16 18 N -0.60 -15.23 3.46 -165.70 -0.57 -15.80 16 19 C -0.21 -5.90 10.42 -15.05 -0.16 -6.06 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.92 -26.36 10.12 55.49 0.56 -25.79 16 23 Si 0.92 21.77 29.55 -169.99 -5.02 16.74 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.16 3.68 6.43 -0.29 0.00 3.68 16 28 C -0.17 -3.14 6.96 -89.22 -0.62 -3.77 16 29 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 30 C -0.18 -1.56 9.61 -39.03 -0.38 -1.93 16 31 C 0.14 1.10 11.17 -17.61 -0.20 0.91 16 32 N -0.53 -5.23 8.61 -13.38 -0.12 -5.34 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.15 1.87 7.74 -52.49 -0.41 1.46 16 42 H 0.40 4.03 6.96 -40.82 -0.28 3.75 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.14 3.62 5.34 -51.93 -0.28 3.34 16 48 H 0.14 0.84 6.53 -52.49 -0.34 0.49 16 49 H 0.17 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 402.97 15.07 6.07 6.07 Total: -1.00 -32.15 402.97 -10.19 -42.34 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.51 Total: 4.44 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.21 Total: -0.71 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.43 Total: -56.29 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.09 Total: -12.59 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.15 -10.19 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962237718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.720 kcal (2) G-P(sol) polarization free energy of solvation -32.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds