Wall clock time and date at job start Wed Apr 1 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47025 * 2 1 4 4 H 1.08994 * 109.47541 * 305.00273 * 3 2 1 5 5 C 1.53001 * 109.46956 * 185.00295 * 3 2 1 6 6 O 1.42907 * 109.47021 * 65.00766 * 3 2 1 7 7 C 1.35680 * 116.99828 * 209.99924 * 6 3 2 8 8 C 1.38899 * 119.62237 * 179.97438 * 7 6 3 9 9 C 1.39571 * 118.94819 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.89356 * 179.97438 * 9 8 7 11 11 O 1.21515 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99809 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99654 * 180.02562 * 12 10 9 14 14 H 1.09000 * 115.51777 * 9.58368 * 13 12 10 15 15 C 1.53005 * 117.44048 * 224.24163 * 13 12 10 16 16 H 1.09002 * 119.54133 * 4.11599 * 15 13 12 17 17 C 1.54388 * 118.11953 * 160.80812 * 15 13 12 18 18 N 1.48147 * 104.61527 * 87.19121 * 17 15 13 19 19 C 1.36944 * 127.83511 * 140.41382 * 18 17 15 20 20 H 1.07995 * 120.00220 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99397 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00462 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99395 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47203 * 90.00014 * 23 21 19 25 25 H 1.48500 * 109.46990 * 209.99586 * 23 21 19 26 26 H 1.48495 * 109.47348 * 329.99414 * 23 21 19 27 27 C 1.51827 * 104.55132 * 320.13659 * 18 17 15 28 28 C 1.53001 * 117.44125 * 155.00283 * 13 12 10 29 29 H 1.09002 * 119.53987 * 355.87867 * 28 13 12 30 30 C 1.39973 * 118.21478 * 0.27504 * 9 8 7 31 31 C 1.37975 * 119.13372 * 359.47986 * 30 9 8 32 32 N 1.31911 * 120.97896 * 0.53067 * 31 30 9 33 33 H 1.08998 * 109.47384 * 59.99107 * 1 2 3 34 34 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.46776 * 299.99433 * 1 2 3 36 36 H 1.09003 * 109.46776 * 240.00567 * 2 1 3 37 37 H 1.08998 * 109.47384 * 120.00893 * 2 1 3 38 38 H 1.08999 * 109.46993 * 60.00165 * 5 3 2 39 39 H 1.09000 * 109.47449 * 180.02562 * 5 3 2 40 40 H 1.09002 * 109.47278 * 300.00264 * 5 3 2 41 41 H 1.08001 * 120.52494 * 0.02562 * 8 7 6 42 42 H 0.96999 * 120.00304 * 0.02562 * 12 10 9 43 43 H 1.09005 * 110.40063 * 205.97149 * 17 15 13 44 44 H 1.08991 * 110.41105 * 328.40677 * 17 15 13 45 45 H 0.96998 * 120.00080 * 180.02562 * 22 21 19 46 46 H 1.08997 * 110.21952 * 281.99947 * 27 18 17 47 47 H 1.09001 * 112.25708 * 158.41268 * 27 18 17 48 48 H 1.07997 * 120.43201 * 179.71670 * 30 9 8 49 49 H 1.08003 * 119.51461 * 180.27253 * 31 30 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5648 1.4443 -0.1258 6 8 1.6621 2.0813 1.2212 7 6 1.4507 3.4208 1.1758 8 6 1.0807 4.0969 2.3314 9 6 0.8674 5.4748 2.2688 10 6 0.4710 6.2387 3.4748 11 8 0.3279 5.6660 4.5369 12 7 0.2691 7.5688 3.3938 13 6 -0.1223 8.3242 4.5864 14 1 -0.0718 7.7759 5.5271 15 6 -1.2416 9.3558 4.4318 16 1 -1.7554 9.4520 3.4753 17 6 -1.9757 9.8294 5.7047 18 7 -1.1602 10.9592 6.2081 19 6 -1.6006 12.1366 6.7514 20 1 -2.6597 12.3225 6.8510 21 6 -0.6855 13.0915 7.1730 22 7 0.6053 12.8651 7.0510 23 14 -1.2863 14.6973 7.9147 24 1 -1.4260 14.5418 9.3849 25 1 -0.3072 15.7747 7.6218 26 1 -2.6031 15.0519 7.3270 27 6 0.2766 10.5177 5.9938 28 6 0.2192 9.8153 4.6202 29 1 0.7935 10.2537 3.8040 30 6 1.0317 6.1145 1.0347 31 6 1.4061 5.3686 -0.0640 32 7 1.5993 4.0673 0.0326 33 1 -0.3634 0.5140 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 -0.3633 0.5138 0.8901 36 1 1.8933 -0.5138 -0.8901 37 1 1.8934 -0.5140 0.8899 38 1 3.8531 0.9570 -1.0572 39 1 3.9283 2.4719 -0.1253 40 1 3.9995 0.9052 0.7160 41 1 0.9608 3.5650 3.2636 42 1 0.3830 8.0259 2.5458 43 1 -2.9826 10.1672 5.4593 44 1 -2.0119 9.0283 6.4429 45 1 1.2446 13.5323 7.3460 46 1 0.5736 9.8120 6.7695 47 1 0.9670 11.3606 5.9611 48 1 0.8713 7.1787 0.9446 49 1 1.5390 5.8567 -1.0182 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962237718.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:16 Heat of formation + Delta-G solvation = 4.695013 kcal Electronic energy + Delta-G solvation = -29004.206114 eV Core-core repulsion = 24932.874404 eV Total energy + Delta-G solvation = -4071.331710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.01726 -41.03449 -39.87485 -39.05699 -36.10382 -35.23699 -34.55803 -33.60253 -32.05396 -31.38021 -30.70955 -28.82842 -27.78313 -26.20070 -24.95768 -24.27375 -23.56856 -22.43488 -22.02806 -21.34650 -20.80608 -19.79378 -18.90121 -18.37456 -17.92039 -17.05881 -16.85281 -16.78753 -16.64808 -16.08853 -15.91916 -15.47056 -15.36350 -14.97326 -14.95424 -14.86322 -14.69280 -14.57983 -14.14329 -13.80141 -13.57895 -13.26676 -13.09276 -13.03251 -13.01527 -12.88795 -12.73004 -12.68703 -12.11016 -12.04160 -11.99327 -11.78197 -11.76003 -11.66679 -11.61573 -11.45314 -11.08752 -10.96999 -10.73393 -10.64832 -9.79806 -9.58595 -8.96403 -7.75664 -5.22887 -0.45968 0.07468 1.49156 1.50512 1.59477 1.61010 1.65108 2.08135 2.50082 2.68635 2.88590 3.20689 3.31929 3.37865 3.55529 3.75715 3.82452 3.84951 3.88926 3.95102 3.98876 4.02084 4.13893 4.19194 4.36717 4.42408 4.53508 4.57672 4.61568 4.67704 4.68277 4.78148 4.80209 4.89155 4.96005 4.98967 5.00495 5.04859 5.11283 5.20796 5.27590 5.33122 5.36393 5.39065 5.46318 5.48872 5.78070 6.22536 6.26386 6.34211 6.71590 6.98602 7.02868 7.69850 8.44323 9.25879 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.001664 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.746987 B =16821.339508 C =17032.638310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.088 0.912 5 C -0.165 4.165 6 O -0.311 6.311 7 C 0.316 3.684 8 C -0.155 4.155 9 C -0.057 4.057 10 C 0.561 3.439 11 O -0.569 6.569 12 N -0.669 5.669 13 C 0.111 3.889 14 H 0.108 0.892 15 C -0.167 4.167 16 H 0.136 0.864 17 C 0.152 3.848 18 N -0.625 5.625 19 C -0.231 4.231 20 H 0.084 0.916 21 C -0.069 4.069 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.152 3.848 28 C -0.169 4.169 29 H 0.126 0.874 30 C -0.169 4.169 31 C 0.146 3.854 32 N -0.531 5.531 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.137 0.863 42 H 0.420 0.580 43 H 0.063 0.937 44 H 0.021 0.979 45 H 0.249 0.751 46 H -0.004 1.004 47 H 0.110 0.890 48 H 0.175 0.825 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -21.662 -22.516 31.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.106 0.894 5 C -0.223 4.223 6 O -0.219 6.219 7 C 0.137 3.863 8 C -0.177 4.177 9 C -0.068 4.068 10 C 0.348 3.652 11 O -0.448 6.448 12 N -0.319 5.319 13 C 0.005 3.995 14 H 0.126 0.874 15 C -0.188 4.188 16 H 0.154 0.846 17 C 0.026 3.974 18 N -0.350 5.350 19 C -0.359 4.359 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.599 5.599 23 Si 0.812 3.188 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.193 1.193 27 C 0.028 3.972 28 C -0.190 4.190 29 H 0.143 0.857 30 C -0.190 4.190 31 C -0.010 4.010 32 N -0.255 5.255 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.259 0.741 43 H 0.081 0.919 44 H 0.039 0.961 45 H 0.059 0.941 46 H 0.014 0.986 47 H 0.127 0.873 48 H 0.193 0.807 49 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.648 -22.505 -22.166 31.798 hybrid contribution -0.287 1.485 1.255 1.966 sum 3.361 -21.020 -20.911 29.840 Atomic orbital electron populations 1.21755 0.95546 1.02382 1.01414 1.21731 0.96470 0.93248 1.04164 1.22671 0.95949 0.93768 0.85197 0.89409 1.22197 0.94164 1.02325 1.03565 1.86304 1.82326 1.15725 1.37556 1.19614 0.92114 0.85210 0.89340 1.21076 1.04091 0.93638 0.98866 1.19936 0.99745 0.93111 0.93986 1.18441 0.76608 0.82105 0.88019 1.90785 1.52590 1.70075 1.31390 1.45000 1.67928 1.06642 1.12292 1.21508 1.00828 0.87701 0.89509 0.87433 1.24323 0.91498 1.02112 1.00853 0.84614 1.21217 0.94628 0.89315 0.92217 1.46429 1.01933 1.15060 1.71548 1.19491 0.92569 0.92048 1.31809 0.89778 1.25591 0.95530 1.02121 1.02868 1.69729 1.00767 1.35345 1.54053 0.85000 0.77320 0.78768 0.77750 1.21755 1.21862 1.19334 1.22325 0.87866 0.97222 0.89823 1.24332 0.99531 0.93821 1.01324 0.85668 1.22515 1.01831 1.03318 0.91293 1.23105 0.90881 0.86942 1.00077 1.67252 1.19640 1.12813 1.25801 0.92569 0.91218 0.94144 0.87661 0.91130 0.88909 0.93239 0.92159 0.84545 0.74120 0.91885 0.96073 0.94122 0.98590 0.87276 0.80738 0.77560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.81 71.98 0.71 -1.21 16 2 C -0.12 -1.33 5.64 30.59 0.17 -1.16 16 3 C 0.08 1.19 2.49 30.59 0.08 1.26 16 4 H 0.09 1.34 6.98 -2.39 -0.02 1.32 16 5 C -0.17 -2.09 9.53 71.98 0.69 -1.40 16 6 O -0.31 -6.54 9.30 -89.98 -0.84 -7.37 16 7 C 0.32 6.80 7.45 84.80 0.63 7.43 16 8 C -0.15 -3.70 9.61 22.75 0.22 -3.48 16 9 C -0.06 -1.24 5.91 -19.90 -0.12 -1.35 16 10 C 0.56 15.55 7.80 86.88 0.68 16.23 16 11 O -0.57 -21.06 16.01 -3.76 -0.06 -21.12 16 12 N -0.67 -16.14 5.52 -445.09 -2.46 -18.60 16 13 C 0.11 3.57 5.96 44.99 0.27 3.84 16 14 H 0.11 4.11 7.40 -2.39 -0.02 4.09 16 15 C -0.17 -5.53 7.06 -9.88 -0.07 -5.60 16 16 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 17 C 0.15 6.27 7.05 86.53 0.61 6.88 16 18 N -0.62 -32.06 3.46 -678.17 -2.35 -34.41 16 19 C -0.23 -12.78 10.42 84.03 0.88 -11.91 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 22 N -0.95 -55.55 10.12 21.65 0.22 -55.33 16 23 Si 0.98 45.08 29.55 68.60 2.03 47.10 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.15 7.40 6.43 85.80 0.55 7.96 16 28 C -0.17 -6.12 6.96 -9.88 -0.07 -6.18 16 29 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 30 C -0.17 -2.26 9.61 22.63 0.22 -2.05 16 31 C 0.15 1.76 11.17 84.62 0.94 2.71 16 32 N -0.53 -9.39 8.61 -309.14 -2.66 -12.05 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.04 0.66 7.82 -2.39 -0.02 0.64 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.14 3.63 7.74 -2.91 -0.02 3.61 16 42 H 0.42 6.76 6.96 -92.71 -0.65 6.12 16 43 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 44 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.11 6.00 5.34 -2.39 -0.01 5.98 16 48 H 0.18 1.12 6.53 -2.91 -0.02 1.10 16 49 H 0.21 0.77 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -73.28 402.97 1.05 -72.23 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.32 Total: 20.96 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 6.85 Total: 8.58 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -7.25 Total: -120.39 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.90 Total: -28.49 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.28 1.05 -72.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962237718.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.929 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds