Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 H 1.09000 * 109.46724 * 304.99893 * 3 2 1 5 5 C 1.52993 * 109.47098 * 184.99826 * 3 2 1 6 6 O 1.42904 * 109.46897 * 64.99882 * 3 2 1 7 7 C 1.35684 * 116.99638 * 210.00029 * 6 3 2 8 8 C 1.38901 * 119.62189 * 180.02562 * 7 6 3 9 9 C 1.39572 * 118.94561 * 179.97438 * 8 7 6 10 10 C 1.48157 * 120.88878 * 180.02562 * 9 8 7 11 11 O 1.21516 * 119.99844 * 185.23568 * 10 9 8 12 12 N 1.34776 * 120.00257 * 5.23489 * 10 9 8 13 13 C 1.49066 * 127.54296 * 355.63541 * 12 10 9 14 14 C 1.56014 * 105.20634 * 182.01474 * 13 12 10 15 15 H 1.09007 * 116.89481 * 158.53692 * 14 13 12 16 16 C 1.57082 * 99.61207 * 32.12990 * 14 13 12 17 17 C 1.49297 * 126.94547 * 174.41573 * 12 10 9 18 18 H 1.08994 * 116.14988 * 16.70329 * 17 12 10 19 19 C 1.56016 * 104.86569 * 246.89899 * 17 12 10 20 20 N 1.47872 * 105.10569 * 288.58169 * 19 17 12 21 21 C 1.36934 * 126.94654 * 182.02649 * 20 19 17 22 22 H 1.08008 * 119.99877 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00224 * 359.97152 * 21 20 19 24 24 N 1.31622 * 119.99667 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00275 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46916 * 60.00320 * 25 23 21 27 27 H 1.48502 * 109.47182 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47238 * 299.99997 * 25 23 21 29 29 C 1.39964 * 118.21774 * 0.27192 * 9 8 7 30 30 C 1.37979 * 119.13554 * 359.43435 * 29 9 8 31 31 N 1.31916 * 120.97310 * 0.58158 * 30 29 9 32 32 H 1.08994 * 109.47338 * 300.00033 * 1 2 3 33 33 H 1.08996 * 109.47316 * 60.00310 * 1 2 3 34 34 H 1.09005 * 109.47321 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46977 * 240.00095 * 2 1 3 36 36 H 1.09001 * 109.46924 * 119.99913 * 2 1 3 37 37 H 1.08998 * 109.47659 * 300.00382 * 5 3 2 38 38 H 1.09004 * 109.47253 * 60.00126 * 5 3 2 39 39 H 1.09001 * 109.47131 * 179.97438 * 5 3 2 40 40 H 1.07997 * 120.52326 * 359.97390 * 8 7 6 41 41 H 1.08995 * 110.83488 * 62.77203 * 13 12 10 42 42 H 1.09005 * 109.69523 * 300.66028 * 13 12 10 43 43 H 1.09002 * 112.37084 * 191.71527 * 16 14 13 44 44 H 1.09000 * 112.36497 * 64.27760 * 16 14 13 45 45 H 1.08996 * 110.31895 * 47.48956 * 19 17 12 46 46 H 1.09000 * 110.31790 * 169.57595 * 19 17 12 47 47 H 0.97001 * 120.00117 * 179.97438 * 24 23 21 48 48 H 1.07998 * 120.43317 * 179.72889 * 29 9 8 49 49 H 1.07994 * 119.51413 * 180.27321 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8418 5 6 3.5647 1.4443 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4505 3.4208 1.1756 8 6 1.0814 4.0973 2.3313 9 6 0.8680 5.4751 2.2686 10 6 0.4737 6.2394 3.4749 11 8 0.1996 7.4198 3.3837 12 7 0.4188 5.6256 4.6735 13 6 0.6303 4.1788 4.9637 14 6 0.3954 4.0308 6.4989 15 1 0.1459 3.0351 6.8658 16 6 -0.6900 5.1470 6.7071 17 6 0.1565 6.2639 5.9974 18 1 -0.2800 7.2623 5.9713 19 6 1.4950 6.1163 6.7853 20 7 1.5922 4.6778 7.1137 21 6 2.5799 4.0635 7.8362 22 1 2.5387 2.9983 8.0103 23 6 3.6342 4.8095 8.3449 24 7 3.6841 6.1077 8.1331 25 14 4.9820 3.9714 9.3299 26 1 5.6439 2.9429 8.4876 27 1 5.9834 4.9811 9.7575 28 1 4.3898 3.3239 10.5280 29 6 1.0316 6.1146 1.0343 30 6 1.4061 5.3687 -0.0644 31 7 1.5992 4.0673 0.0324 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.9994 0.9052 0.7161 38 1 3.8532 0.9570 -1.0571 39 1 3.9281 2.4720 -0.1261 40 1 0.9613 3.5654 3.2635 41 1 1.6448 3.8758 4.7050 42 1 -0.0961 3.5833 4.4106 43 1 -0.8641 5.3651 7.7608 44 1 -1.6166 4.9287 6.1763 45 1 2.3363 6.4199 6.1623 46 1 1.4653 6.7130 7.6970 47 1 4.4206 6.6292 8.4888 48 1 0.8713 7.1788 0.9441 49 1 1.5383 5.8566 -1.0187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032721579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = 36.849080 kcal Electronic energy + Delta-G solvation = -31183.452050 eV Core-core repulsion = 27113.514644 eV Total energy + Delta-G solvation = -4069.937405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98292 -39.98885 -38.56477 -37.58108 -34.39188 -33.90452 -32.79899 -31.33748 -30.55588 -29.91327 -28.98992 -28.66269 -25.64964 -25.00117 -24.15639 -23.31737 -23.20307 -21.54172 -20.62661 -19.90340 -19.17093 -18.24651 -17.05787 -16.88798 -16.30451 -15.87512 -15.80041 -15.53352 -15.02819 -14.69233 -14.60820 -14.18481 -14.05394 -13.87437 -13.79905 -13.41249 -13.31741 -13.23778 -12.68778 -12.47495 -12.07626 -11.98752 -11.96367 -11.77509 -11.69164 -11.36148 -11.32958 -11.08798 -10.93459 -10.89828 -10.80465 -10.72436 -10.64937 -10.32145 -10.15099 -9.94722 -9.87217 -9.67904 -9.47241 -8.73654 -8.54447 -8.14440 -6.97860 -5.80658 -3.15598 0.76242 1.14128 2.88324 3.05012 3.21214 3.35893 3.40260 3.42122 3.88204 4.16994 4.38551 4.50120 4.55801 4.74528 4.85865 4.91920 4.97593 5.01736 5.11539 5.14747 5.20033 5.28938 5.33973 5.38445 5.48668 5.52826 5.55087 5.63670 5.68890 5.70096 5.70534 5.78269 5.80817 5.87070 5.99351 6.01622 6.07072 6.11204 6.19203 6.31273 6.34653 6.41130 6.51858 6.59548 7.21574 7.36646 7.41246 7.66846 7.74904 7.89670 8.05313 8.38471 9.05864 9.66940 10.34932 11.31477 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.003518 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.970831 B = 7957.757724 C = 9299.006120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C 0.086 3.914 4 H 0.089 0.911 5 C -0.170 4.170 6 O -0.296 6.296 7 C 0.320 3.680 8 C -0.185 4.185 9 C -0.042 4.042 10 C 0.571 3.429 11 O -0.544 6.544 12 N -0.596 5.596 13 C 0.074 3.926 14 C 0.140 3.860 15 H 0.110 0.890 16 C -0.152 4.152 17 C 0.098 3.902 18 H 0.116 0.884 19 C 0.173 3.827 20 N -0.596 5.596 21 C -0.234 4.234 22 H 0.081 0.919 23 C -0.004 4.004 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.284 1.284 29 C -0.160 4.160 30 C 0.130 3.870 31 N -0.532 5.532 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.174 0.826 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.255 0.745 48 H 0.147 0.853 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.233 -8.301 -16.106 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.030 3.970 4 H 0.107 0.893 5 C -0.227 4.227 6 O -0.204 6.204 7 C 0.141 3.859 8 C -0.206 4.206 9 C -0.052 4.052 10 C 0.360 3.640 11 O -0.423 6.423 12 N -0.329 5.329 13 C -0.050 4.050 14 C 0.031 3.969 15 H 0.128 0.872 16 C -0.191 4.191 17 C -0.004 4.004 18 H 0.134 0.866 19 C 0.048 3.952 20 N -0.321 5.321 21 C -0.362 4.362 22 H 0.099 0.901 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.743 3.257 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 C -0.181 4.181 30 C -0.025 4.025 31 N -0.256 5.256 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.191 0.809 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.065 0.935 48 H 0.165 0.835 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.884 -8.233 -16.587 19.756 hybrid contribution 0.824 0.151 0.886 1.219 sum -6.060 -8.082 -15.701 18.670 Atomic orbital electron populations 1.21755 0.95244 1.01757 1.02312 1.21691 0.96764 0.94341 1.03140 1.22396 0.95228 0.93031 0.86371 0.89341 1.22219 0.95098 1.03014 1.02413 1.86312 1.82397 1.15863 1.35799 1.19663 0.92057 0.84730 0.89461 1.22526 1.03618 0.94164 1.00245 1.20219 0.97554 0.92814 0.94631 1.17649 0.78366 0.86236 0.81795 1.90741 1.50824 1.15340 1.85363 1.49381 1.67274 1.10205 1.06010 1.23920 1.00750 0.80291 1.00071 1.23235 0.88286 0.96408 0.88981 0.87197 1.24185 0.96866 0.97249 1.00822 1.24411 0.99106 0.96842 0.80063 0.86641 1.21941 0.90804 0.85718 0.96700 1.45244 1.22398 1.03224 1.61186 1.19004 0.99198 0.92278 1.25720 0.90100 1.24816 0.98747 0.95739 1.00779 1.69896 1.32721 1.04724 1.49233 0.86193 0.81495 0.78124 0.79882 1.21117 1.21608 1.21053 1.22088 1.01701 1.02364 0.91914 1.22322 0.93825 0.87741 0.98577 1.67077 1.19990 1.11758 1.26792 0.92032 0.92910 0.92492 0.90155 0.90774 0.91804 0.91257 0.91923 0.80901 0.89867 0.91774 0.89537 0.91491 0.93436 0.92260 0.93476 0.83479 0.81959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.18 16 3 C 0.09 0.91 2.49 -26.74 -0.07 0.84 16 4 H 0.09 0.96 6.98 -51.93 -0.36 0.60 16 5 C -0.17 -1.68 9.53 37.15 0.35 -1.33 16 6 O -0.30 -3.94 9.30 -18.75 -0.17 -4.12 16 7 C 0.32 4.57 7.45 -17.16 -0.13 4.44 16 8 C -0.19 -2.78 8.85 -38.84 -0.34 -3.13 16 9 C -0.04 -0.67 5.91 -104.68 -0.62 -1.28 16 10 C 0.57 10.67 7.89 -12.19 -0.10 10.57 16 11 O -0.54 -11.42 16.80 5.35 0.09 -11.33 16 12 N -0.60 -10.90 3.01 -156.79 -0.47 -11.37 16 13 C 0.07 1.23 4.29 -1.01 0.00 1.23 16 14 C 0.14 2.49 5.53 -62.55 -0.35 2.15 16 15 H 0.11 1.73 8.14 -51.92 -0.42 1.31 16 16 C -0.15 -2.47 6.80 -22.30 -0.15 -2.62 16 17 C 0.10 1.85 5.20 -62.55 -0.33 1.53 16 18 H 0.12 2.11 8.04 -51.93 -0.42 1.70 16 19 C 0.17 4.06 4.78 -1.68 -0.01 4.05 16 20 N -0.60 -13.94 3.02 -156.34 -0.47 -14.41 16 21 C -0.23 -6.10 10.37 -15.06 -0.16 -6.25 16 22 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 23 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 24 N -0.92 -26.40 10.56 55.49 0.59 -25.82 16 25 Si 0.91 21.47 29.55 -169.99 -5.02 16.44 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 C -0.16 -2.19 9.67 -39.03 -0.38 -2.57 16 30 C 0.13 1.55 11.17 -17.61 -0.20 1.35 16 31 N -0.53 -7.07 8.61 -13.38 -0.12 -7.18 16 32 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.17 2.55 3.02 -52.49 -0.16 2.39 16 41 H 0.08 1.53 7.00 -51.93 -0.36 1.17 16 42 H 0.06 0.88 6.86 -51.93 -0.36 0.53 16 43 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 46 H 0.06 1.53 7.46 -51.93 -0.39 1.14 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.15 1.90 7.75 -52.49 -0.41 1.49 16 49 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -31.42 391.28 -9.48 -40.91 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.45 Total: 4.30 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.35 Total: 6.67 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.47 Total: -58.78 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.08 Total: -15.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.42 -9.48 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032721579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.757 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds