Wall clock time and date at job start Wed Apr 1 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47148 * 2 1 4 4 H 1.09000 * 109.46724 * 304.99893 * 3 2 1 5 5 C 1.52993 * 109.47098 * 184.99826 * 3 2 1 6 6 O 1.42904 * 109.46897 * 64.99882 * 3 2 1 7 7 C 1.35684 * 116.99638 * 210.00029 * 6 3 2 8 8 C 1.38901 * 119.62189 * 180.02562 * 7 6 3 9 9 C 1.39572 * 118.94561 * 179.97438 * 8 7 6 10 10 C 1.48157 * 120.88878 * 180.02562 * 9 8 7 11 11 O 1.21516 * 119.99844 * 185.23568 * 10 9 8 12 12 N 1.34776 * 120.00257 * 5.23489 * 10 9 8 13 13 C 1.49066 * 127.54296 * 355.63541 * 12 10 9 14 14 C 1.56014 * 105.20634 * 182.01474 * 13 12 10 15 15 H 1.09007 * 116.89481 * 158.53692 * 14 13 12 16 16 C 1.57082 * 99.61207 * 32.12990 * 14 13 12 17 17 C 1.49297 * 126.94547 * 174.41573 * 12 10 9 18 18 H 1.08994 * 116.14988 * 16.70329 * 17 12 10 19 19 C 1.56016 * 104.86569 * 246.89899 * 17 12 10 20 20 N 1.47872 * 105.10569 * 288.58169 * 19 17 12 21 21 C 1.36934 * 126.94654 * 182.02649 * 20 19 17 22 22 H 1.08008 * 119.99877 * 179.97438 * 21 20 19 23 23 C 1.38809 * 120.00224 * 359.97152 * 21 20 19 24 24 N 1.31622 * 119.99667 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00275 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46916 * 60.00320 * 25 23 21 27 27 H 1.48502 * 109.47182 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47238 * 299.99997 * 25 23 21 29 29 C 1.39964 * 118.21774 * 0.27192 * 9 8 7 30 30 C 1.37979 * 119.13554 * 359.43435 * 29 9 8 31 31 N 1.31916 * 120.97310 * 0.58158 * 30 29 9 32 32 H 1.08994 * 109.47338 * 300.00033 * 1 2 3 33 33 H 1.08996 * 109.47316 * 60.00310 * 1 2 3 34 34 H 1.09005 * 109.47321 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46977 * 240.00095 * 2 1 3 36 36 H 1.09001 * 109.46924 * 119.99913 * 2 1 3 37 37 H 1.08998 * 109.47659 * 300.00382 * 5 3 2 38 38 H 1.09004 * 109.47253 * 60.00126 * 5 3 2 39 39 H 1.09001 * 109.47131 * 179.97438 * 5 3 2 40 40 H 1.07997 * 120.52326 * 359.97390 * 8 7 6 41 41 H 1.08995 * 110.83488 * 62.77203 * 13 12 10 42 42 H 1.09005 * 109.69523 * 300.66028 * 13 12 10 43 43 H 1.09002 * 112.37084 * 191.71527 * 16 14 13 44 44 H 1.09000 * 112.36497 * 64.27760 * 16 14 13 45 45 H 1.08996 * 110.31895 * 47.48956 * 19 17 12 46 46 H 1.09000 * 110.31790 * 169.57595 * 19 17 12 47 47 H 0.97001 * 120.00117 * 179.97438 * 24 23 21 48 48 H 1.07998 * 120.43317 * 179.72889 * 29 9 8 49 49 H 1.07994 * 119.51413 * 180.27321 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 -0.8418 5 6 3.5647 1.4443 -0.1257 6 8 1.6619 2.0813 1.2211 7 6 1.4505 3.4208 1.1756 8 6 1.0814 4.0973 2.3313 9 6 0.8680 5.4751 2.2686 10 6 0.4737 6.2394 3.4749 11 8 0.1996 7.4198 3.3837 12 7 0.4188 5.6256 4.6735 13 6 0.6303 4.1788 4.9637 14 6 0.3954 4.0308 6.4989 15 1 0.1459 3.0351 6.8658 16 6 -0.6900 5.1470 6.7071 17 6 0.1565 6.2639 5.9974 18 1 -0.2800 7.2623 5.9713 19 6 1.4950 6.1163 6.7853 20 7 1.5922 4.6778 7.1137 21 6 2.5799 4.0635 7.8362 22 1 2.5387 2.9983 8.0103 23 6 3.6342 4.8095 8.3449 24 7 3.6841 6.1077 8.1331 25 14 4.9820 3.9714 9.3299 26 1 5.6439 2.9429 8.4876 27 1 5.9834 4.9811 9.7575 28 1 4.3898 3.3239 10.5280 29 6 1.0316 6.1146 1.0343 30 6 1.4061 5.3687 -0.0644 31 7 1.5992 4.0673 0.0324 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.9994 0.9052 0.7161 38 1 3.8532 0.9570 -1.0571 39 1 3.9281 2.4720 -0.1261 40 1 0.9613 3.5654 3.2635 41 1 1.6448 3.8758 4.7050 42 1 -0.0961 3.5833 4.4106 43 1 -0.8641 5.3651 7.7608 44 1 -1.6166 4.9287 6.1763 45 1 2.3363 6.4199 6.1623 46 1 1.4653 6.7130 7.6970 47 1 4.4206 6.6292 8.4888 48 1 0.8713 7.1788 0.9441 49 1 1.5383 5.8566 -1.0187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032721579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:03 Heat of formation + Delta-G solvation = 17.405684 kcal Electronic energy + Delta-G solvation = -31184.295179 eV Core-core repulsion = 27113.514644 eV Total energy + Delta-G solvation = -4070.780534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19004 -41.31589 -39.77943 -38.88722 -35.62967 -35.17269 -34.23436 -32.90748 -31.55630 -30.86967 -30.43390 -30.35572 -27.17098 -26.52155 -25.18844 -24.57111 -24.33156 -22.67926 -21.78255 -21.41021 -20.62143 -19.53927 -18.64948 -18.14136 -17.65096 -17.25032 -16.85476 -16.82443 -16.42387 -16.27667 -15.78459 -15.47386 -15.22686 -14.96358 -14.92446 -14.70281 -14.59966 -14.19000 -13.89306 -13.63592 -13.54040 -13.42958 -13.15317 -12.98380 -12.88445 -12.80241 -12.68701 -12.65742 -12.28342 -12.18668 -12.07792 -12.00794 -11.87841 -11.71497 -11.59064 -11.54823 -11.34711 -11.03602 -10.81014 -10.56168 -9.72179 -9.53742 -8.92101 -7.85207 -5.20823 -0.42076 0.08479 1.46980 1.49445 1.55408 1.64030 1.80873 1.98307 2.48164 2.74025 3.13830 3.28382 3.32403 3.43603 3.72336 3.74006 3.79975 3.88056 3.97928 4.00469 4.01135 4.06049 4.18310 4.21835 4.40730 4.44785 4.53829 4.54330 4.62340 4.66853 4.69958 4.76828 4.79626 4.83832 4.98609 5.02059 5.05735 5.08260 5.09959 5.14433 5.20455 5.21181 5.37501 5.40739 5.43065 5.49132 5.64435 6.08639 6.23548 6.44346 6.70681 6.91782 7.02200 7.70112 8.39889 9.25923 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.003518 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.970831 B = 7957.757724 C = 9299.006120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.080 3.920 4 H 0.087 0.913 5 C -0.167 4.167 6 O -0.306 6.306 7 C 0.315 3.685 8 C -0.193 4.193 9 C -0.060 4.060 10 C 0.567 3.433 11 O -0.575 6.575 12 N -0.600 5.600 13 C 0.083 3.917 14 C 0.135 3.865 15 H 0.141 0.859 16 C -0.129 4.129 17 C 0.101 3.899 18 H 0.119 0.881 19 C 0.187 3.813 20 N -0.616 5.616 21 C -0.231 4.231 22 H 0.096 0.904 23 C -0.069 4.069 24 N -0.957 5.957 25 Si 0.975 3.025 26 H -0.278 1.278 27 H -0.303 1.303 28 H -0.272 1.272 29 C -0.164 4.164 30 C 0.144 3.856 31 N -0.531 5.531 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.173 0.827 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.103 0.897 45 H -0.004 1.004 46 H 0.024 0.976 47 H 0.244 0.756 48 H 0.153 0.847 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -10.970 -18.035 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.024 3.976 4 H 0.105 0.895 5 C -0.224 4.224 6 O -0.214 6.214 7 C 0.137 3.863 8 C -0.214 4.214 9 C -0.070 4.070 10 C 0.356 3.644 11 O -0.456 6.456 12 N -0.331 5.331 13 C -0.040 4.040 14 C 0.029 3.971 15 H 0.158 0.842 16 C -0.168 4.168 17 C -0.002 4.002 18 H 0.137 0.863 19 C 0.061 3.939 20 N -0.340 5.340 21 C -0.360 4.360 22 H 0.114 0.886 23 C -0.261 4.261 24 N -0.606 5.606 25 Si 0.804 3.196 26 H -0.204 1.204 27 H -0.230 1.230 28 H -0.198 1.198 29 C -0.185 4.185 30 C -0.011 4.011 31 N -0.255 5.255 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.190 0.810 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.014 0.986 46 H 0.042 0.958 47 H 0.053 0.947 48 H 0.171 0.829 49 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.197 -10.975 -18.529 23.043 hybrid contribution 1.212 0.944 1.374 2.061 sum -6.985 -10.031 -17.155 21.064 Atomic orbital electron populations 1.21747 0.95235 1.02461 1.01538 1.21724 0.96734 0.92901 1.04163 1.22662 0.95636 0.93989 0.85274 0.89504 1.22210 0.94612 1.02046 1.03561 1.86305 1.82276 1.15383 1.37425 1.19723 0.91865 0.85281 0.89452 1.22440 1.04439 0.93808 1.00701 1.20106 0.99383 0.93267 0.94279 1.18117 0.77599 0.86093 0.82558 1.90709 1.52232 1.16699 1.85996 1.49446 1.67139 1.10863 1.05676 1.23828 1.00866 0.79787 0.99537 1.23666 0.86433 0.97987 0.89043 0.84174 1.24091 0.97268 0.94484 1.00925 1.24255 0.97052 0.98438 0.80467 0.86332 1.21528 0.91675 0.85866 0.94853 1.45487 1.23767 1.03533 1.61212 1.19502 0.99281 0.93006 1.24218 0.88596 1.25632 1.01405 0.96284 1.02814 1.70140 1.33091 1.06230 1.51117 0.85191 0.78693 0.76828 0.78868 1.20433 1.22995 1.19804 1.22278 1.01669 1.02867 0.91663 1.22961 0.91519 0.87129 0.99504 1.67211 1.19725 1.12296 1.26276 0.93772 0.92693 0.91075 0.87752 0.91058 0.92239 0.88788 0.93755 0.80984 0.91908 0.87745 0.89562 0.87822 0.98572 0.95775 0.94709 0.82939 0.77820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.81 71.98 0.71 -1.52 16 2 C -0.12 -1.70 5.64 30.59 0.17 -1.52 16 3 C 0.08 1.54 2.49 30.59 0.08 1.61 16 4 H 0.09 1.70 6.98 -2.39 -0.02 1.68 16 5 C -0.17 -3.01 9.53 71.98 0.69 -2.32 16 6 O -0.31 -7.76 9.30 -90.02 -0.84 -8.59 16 7 C 0.32 8.61 7.45 84.80 0.63 9.25 16 8 C -0.19 -5.67 8.85 22.75 0.20 -5.47 16 9 C -0.06 -1.89 5.91 -19.90 -0.12 -2.01 16 10 C 0.57 21.34 7.89 86.88 0.69 22.02 16 11 O -0.57 -24.62 16.80 -3.76 -0.06 -24.68 16 12 N -0.60 -21.85 3.01 -768.27 -2.31 -24.17 16 13 C 0.08 2.65 4.29 86.93 0.37 3.03 16 14 C 0.14 4.56 5.53 46.93 0.26 4.82 16 15 H 0.14 3.91 8.14 -2.38 -0.02 3.89 16 16 C -0.13 -3.92 6.80 33.46 0.23 -3.69 16 17 C 0.10 3.84 5.20 46.93 0.24 4.08 16 18 H 0.12 4.43 8.04 -2.39 -0.02 4.41 16 19 C 0.19 9.20 4.78 87.16 0.42 9.62 16 20 N -0.62 -29.07 3.02 -648.53 -1.96 -31.03 16 21 C -0.23 -12.11 10.37 84.03 0.87 -11.24 16 22 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 23 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 24 N -0.96 -57.92 10.56 21.65 0.23 -57.69 16 25 Si 0.98 45.03 29.55 68.60 2.03 47.06 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 C -0.16 -4.31 9.67 22.63 0.22 -4.10 16 30 C 0.14 3.08 11.17 84.62 0.94 4.03 16 31 N -0.53 -13.05 8.61 -309.14 -2.66 -15.71 16 32 H 0.04 0.79 7.82 -2.39 -0.02 0.77 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 40 H 0.17 4.91 3.02 -2.91 -0.01 4.90 16 41 H 0.06 2.30 7.00 -2.39 -0.02 2.29 16 42 H 0.10 2.56 6.86 -2.38 -0.02 2.54 16 43 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.00 -0.23 7.68 -2.39 -0.02 -0.25 16 46 H 0.02 1.33 7.46 -2.39 -0.02 1.32 16 47 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.15 3.81 7.75 -2.91 -0.02 3.78 16 49 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -72.40 391.28 2.44 -69.96 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.95 Total: 21.63 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: 7.06 Total: 23.22 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -6.71 Total: -128.59 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.90 Total: -33.28 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.40 2.44 -69.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032721579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.369 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds