Wall clock time and date at job start Wed Apr 1 2020 03:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 H 1.08994 * 109.47218 * 55.00090 * 3 2 1 5 5 C 1.53006 * 109.47356 * 174.99689 * 3 2 1 6 6 O 1.42901 * 109.47236 * 294.99735 * 3 2 1 7 7 C 1.35691 * 116.99688 * 149.99847 * 6 3 2 8 8 C 1.38898 * 119.61680 * 180.02562 * 7 6 3 9 9 C 1.39577 * 118.94313 * 180.02562 * 8 7 6 10 10 C 1.48154 * 120.89019 * 179.97438 * 9 8 7 11 11 O 1.21510 * 120.00163 * 6.36496 * 10 9 8 12 12 N 1.34779 * 119.99912 * 186.08879 * 10 9 8 13 13 C 1.47870 * 126.94277 * 354.31248 * 12 10 9 14 14 C 1.56005 * 105.11260 * 181.87231 * 13 12 10 15 15 H 1.08998 * 116.80762 * 159.41613 * 14 13 12 16 16 C 1.57082 * 99.47505 * 33.16410 * 14 13 12 17 17 C 1.49293 * 126.94763 * 174.62326 * 12 10 9 18 18 H 1.08997 * 116.14746 * 16.70613 * 17 12 10 19 19 C 1.56024 * 104.09391 * 247.56244 * 17 12 10 20 20 N 1.49283 * 104.32036 * 289.11185 * 14 13 12 21 21 C 1.36937 * 126.94630 * 246.62248 * 20 14 13 22 22 H 1.08005 * 120.00023 * 359.97438 * 21 20 14 23 23 C 1.38814 * 119.99961 * 180.02562 * 21 20 14 24 24 N 1.31611 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99703 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47296 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47027 * 119.99809 * 25 23 21 28 28 H 1.48503 * 109.46735 * 239.99803 * 25 23 21 29 29 C 1.39973 * 118.21440 * 0.25395 * 9 8 7 30 30 C 1.37979 * 119.13491 * 359.47232 * 29 9 8 31 31 N 1.31906 * 120.97747 * 0.54473 * 30 29 9 32 32 H 1.09005 * 109.46545 * 60.00050 * 1 2 3 33 33 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46752 * 300.00165 * 1 2 3 35 35 H 1.09004 * 109.47196 * 239.99950 * 2 1 3 36 36 H 1.08997 * 109.47087 * 120.00225 * 2 1 3 37 37 H 1.09000 * 109.46557 * 59.99591 * 5 3 2 38 38 H 1.08996 * 109.47032 * 179.97438 * 5 3 2 39 39 H 1.09000 * 109.46990 * 300.00515 * 5 3 2 40 40 H 1.07993 * 120.52791 * 0.02562 * 8 7 6 41 41 H 1.08996 * 110.31476 * 300.90677 * 13 12 10 42 42 H 1.08998 * 110.31553 * 63.09653 * 13 12 10 43 43 H 1.09002 * 112.36785 * 191.50964 * 16 14 13 44 44 H 1.09006 * 112.44670 * 64.09417 * 16 14 13 45 45 H 1.09003 * 110.31241 * 47.67446 * 19 17 12 46 46 H 1.08996 * 110.31255 * 169.85734 * 19 17 12 47 47 H 0.97004 * 119.99608 * 180.02562 * 24 23 21 48 48 H 1.08000 * 120.43205 * 179.72881 * 29 9 8 49 49 H 1.07995 * 119.50837 * 180.27632 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5649 1.4443 0.1258 6 8 1.6621 2.0813 -1.2211 7 6 1.4507 3.4209 -1.1756 8 6 1.0807 4.0971 -2.3311 9 6 0.8674 5.4750 -2.2684 10 6 0.4721 6.2391 -3.4745 11 8 0.2169 5.6535 -4.5082 12 7 0.3902 7.5835 -3.4238 13 6 0.5448 8.4387 -2.2274 14 6 0.3062 9.8946 -2.7346 15 1 0.0331 10.6376 -1.9854 16 6 -0.7554 9.6070 -3.8562 17 6 0.1187 8.5096 -4.5628 18 1 -0.3016 8.0565 -5.4606 19 6 1.4575 9.2898 -4.7455 20 7 1.5139 10.2019 -3.5565 21 6 2.4849 11.1267 -3.2789 22 1 2.4195 11.7260 -2.3827 23 6 3.5526 11.2949 -4.1499 24 7 3.6320 10.5650 -5.2423 25 14 4.8768 12.5571 -3.7716 26 1 4.5568 13.2423 -2.4936 27 1 6.1908 11.8755 -3.6529 28 1 4.9350 13.5571 -4.8678 29 6 1.0428 6.1164 -1.0367 30 6 1.4064 5.3686 0.0644 31 7 1.5994 4.0674 -0.0323 32 1 -0.3632 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 3.9995 0.9051 -0.7160 38 1 3.9283 2.4719 0.1253 39 1 3.8532 0.9569 1.0572 40 1 0.9599 3.5651 -3.2631 41 1 -0.1960 8.1724 -1.4736 42 1 1.5514 8.3421 -1.8207 43 1 -0.9294 10.4732 -4.4945 44 1 -1.6849 9.2024 -3.4555 45 1 2.3002 8.5985 -4.7542 46 1 1.4340 9.8709 -5.6674 47 1 4.3783 10.6823 -5.8507 48 1 0.8915 7.1821 -0.9485 49 1 1.5390 5.8566 1.0186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032721580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:08 Heat of formation + Delta-G solvation = 38.077203 kcal Electronic energy + Delta-G solvation = -30696.060459 eV Core-core repulsion = 26626.176309 eV Total energy + Delta-G solvation = -4069.884150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99026 -40.06093 -38.51554 -37.61858 -34.48497 -33.79042 -32.72572 -31.50707 -30.57809 -29.96140 -29.00605 -28.63871 -25.62609 -25.00427 -24.14132 -23.63957 -22.93340 -21.64520 -20.52261 -19.96714 -19.18884 -18.40993 -17.32095 -16.78503 -16.16195 -15.81470 -15.74628 -15.36406 -15.23406 -14.73818 -14.59332 -14.21182 -14.08114 -13.92518 -13.87039 -13.48625 -13.35582 -13.24213 -12.72569 -12.49220 -12.13252 -12.02015 -12.01109 -11.75178 -11.70530 -11.38436 -11.34448 -11.11617 -10.97558 -10.93705 -10.84473 -10.71411 -10.65952 -10.32003 -10.11404 -9.96788 -9.87397 -9.68199 -9.48134 -8.77923 -8.55186 -8.15306 -7.00368 -5.82730 -3.17342 0.76413 1.13447 2.76807 3.07688 3.28661 3.33813 3.38700 3.42121 3.87474 4.17771 4.35859 4.46661 4.52013 4.70066 4.82933 4.89072 4.92326 5.01242 5.08077 5.12919 5.16281 5.27270 5.32355 5.33922 5.47603 5.50432 5.53794 5.63418 5.65981 5.66939 5.68428 5.73634 5.79498 5.82556 5.94406 5.99679 6.03001 6.09622 6.16094 6.28453 6.32519 6.41350 6.49316 6.58567 7.19065 7.34470 7.38600 7.64043 7.74404 7.89196 7.99443 8.38072 9.00917 9.64569 10.32170 11.29828 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.002643 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.225878 B =10592.415945 C =11396.025440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.086 3.914 4 H 0.090 0.910 5 C -0.170 4.170 6 O -0.298 6.298 7 C 0.317 3.683 8 C -0.137 4.137 9 C -0.041 4.041 10 C 0.570 3.430 11 O -0.543 6.543 12 N -0.594 5.594 13 C 0.071 3.929 14 C 0.141 3.859 15 H 0.110 0.890 16 C -0.151 4.151 17 C 0.098 3.902 18 H 0.115 0.885 19 C 0.175 3.825 20 N -0.599 5.599 21 C -0.232 4.232 22 H 0.082 0.918 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 C -0.208 4.208 30 C 0.133 3.867 31 N -0.531 5.531 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.254 0.746 48 H 0.172 0.828 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -14.173 12.253 20.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.227 4.227 6 O -0.206 6.206 7 C 0.138 3.862 8 C -0.159 4.159 9 C -0.052 4.052 10 C 0.358 3.642 11 O -0.422 6.422 12 N -0.327 5.327 13 C -0.053 4.053 14 C 0.032 3.968 15 H 0.128 0.872 16 C -0.191 4.191 17 C -0.004 4.004 18 H 0.133 0.867 19 C 0.050 3.950 20 N -0.324 5.324 21 C -0.360 4.360 22 H 0.100 0.900 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.743 3.257 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 C -0.227 4.227 30 C -0.022 4.022 31 N -0.255 5.255 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.168 0.832 41 H 0.083 0.917 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.189 0.811 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.898 -15.122 12.087 20.551 hybrid contribution 0.819 1.020 -0.340 1.352 sum -6.078 -14.102 11.747 19.334 Atomic orbital electron populations 1.21761 0.95229 1.01743 1.02382 1.21687 0.96788 0.94351 1.03056 1.22399 0.95217 0.93013 0.86449 0.89232 1.22220 0.95094 1.03050 1.02352 1.86298 1.82549 1.15931 1.35827 1.19566 0.92509 0.84684 0.89441 1.21091 1.03002 0.93159 0.98651 1.20160 0.97569 0.93112 0.94321 1.17666 0.78353 0.80887 0.87285 1.90745 1.50958 1.68568 1.31893 1.49058 1.67849 1.03950 1.11817 1.23721 1.00769 0.93707 0.87151 1.23193 0.88283 0.91762 0.93524 0.87238 1.24173 0.96766 0.98624 0.99512 1.24456 0.99030 0.87497 0.89462 0.86700 1.22307 0.90750 0.91006 0.90902 1.45751 1.22340 1.42171 1.22101 1.19097 0.99448 1.11844 1.05642 0.90036 1.24819 0.98774 0.99650 0.96993 1.69901 1.31958 1.41855 1.12803 0.86051 0.81656 0.80584 0.77450 1.20433 1.21786 1.21717 1.23475 1.02279 1.04327 0.92665 1.22388 0.93381 0.87634 0.98778 1.67082 1.19823 1.11984 1.26600 0.92069 0.92506 0.92804 0.90928 0.90110 0.91978 0.91842 0.91193 0.83183 0.91745 0.89966 0.89546 0.91489 0.93187 0.92101 0.93564 0.81134 0.81920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -0.98 5.64 -26.73 -0.15 -1.13 16 3 C 0.09 0.88 2.49 -26.73 -0.07 0.81 16 4 H 0.09 0.96 6.98 -51.93 -0.36 0.60 16 5 C -0.17 -1.60 9.53 37.16 0.35 -1.25 16 6 O -0.30 -3.92 9.30 -18.77 -0.17 -4.09 16 7 C 0.32 4.52 7.45 -17.16 -0.13 4.39 16 8 C -0.14 -2.13 9.61 -38.84 -0.37 -2.50 16 9 C -0.04 -0.66 5.91 -104.68 -0.62 -1.27 16 10 C 0.57 10.62 7.87 -12.19 -0.10 10.52 16 11 O -0.54 -11.57 16.80 5.36 0.09 -11.48 16 12 N -0.59 -10.61 2.94 -157.77 -0.46 -11.07 16 13 C 0.07 1.11 4.25 -1.68 -0.01 1.10 16 14 C 0.14 2.42 5.52 -62.56 -0.35 2.07 16 15 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 16 C -0.15 -2.40 6.82 -22.30 -0.15 -2.55 16 17 C 0.10 1.81 5.19 -62.55 -0.32 1.49 16 18 H 0.12 2.08 8.04 -51.93 -0.42 1.66 16 19 C 0.17 4.03 4.88 -0.50 0.00 4.03 16 20 N -0.60 -13.68 3.07 -154.64 -0.47 -14.15 16 21 C -0.23 -5.94 10.38 -15.06 -0.16 -6.09 16 22 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 24 N -0.92 -26.16 10.57 55.49 0.59 -25.57 16 25 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 C -0.21 -2.77 8.84 -39.03 -0.35 -3.11 16 30 C 0.13 1.59 11.17 -17.61 -0.20 1.40 16 31 N -0.53 -7.05 8.61 -13.38 -0.12 -7.16 16 32 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.15 2.34 7.75 -52.49 -0.41 1.94 16 41 H 0.06 0.79 6.89 -51.93 -0.36 0.43 16 42 H 0.08 1.39 6.89 -51.93 -0.36 1.03 16 43 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 1.34 7.73 -51.93 -0.40 0.94 16 46 H 0.06 1.55 7.47 -51.93 -0.39 1.16 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.17 2.08 3.00 -52.49 -0.16 1.93 16 49 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -31.42 391.21 -9.47 -40.89 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.45 Total: 3.77 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.34 Total: 6.77 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.47 Total: -57.96 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.08 Total: -15.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.42 -9.47 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032721580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.963 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds