Wall clock time and date at job start Wed Apr 1 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 H 1.08994 * 109.47218 * 55.00090 * 3 2 1 5 5 C 1.53006 * 109.47356 * 174.99689 * 3 2 1 6 6 O 1.42901 * 109.47236 * 294.99735 * 3 2 1 7 7 C 1.35691 * 116.99688 * 149.99847 * 6 3 2 8 8 C 1.38898 * 119.61680 * 180.02562 * 7 6 3 9 9 C 1.39577 * 118.94313 * 180.02562 * 8 7 6 10 10 C 1.48154 * 120.89019 * 179.97438 * 9 8 7 11 11 O 1.21510 * 120.00163 * 6.36496 * 10 9 8 12 12 N 1.34779 * 119.99912 * 186.08879 * 10 9 8 13 13 C 1.47870 * 126.94277 * 354.31248 * 12 10 9 14 14 C 1.56005 * 105.11260 * 181.87231 * 13 12 10 15 15 H 1.08998 * 116.80762 * 159.41613 * 14 13 12 16 16 C 1.57082 * 99.47505 * 33.16410 * 14 13 12 17 17 C 1.49293 * 126.94763 * 174.62326 * 12 10 9 18 18 H 1.08997 * 116.14746 * 16.70613 * 17 12 10 19 19 C 1.56024 * 104.09391 * 247.56244 * 17 12 10 20 20 N 1.49283 * 104.32036 * 289.11185 * 14 13 12 21 21 C 1.36937 * 126.94630 * 246.62248 * 20 14 13 22 22 H 1.08005 * 120.00023 * 359.97438 * 21 20 14 23 23 C 1.38814 * 119.99961 * 180.02562 * 21 20 14 24 24 N 1.31611 * 120.00034 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99703 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47296 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47027 * 119.99809 * 25 23 21 28 28 H 1.48503 * 109.46735 * 239.99803 * 25 23 21 29 29 C 1.39973 * 118.21440 * 0.25395 * 9 8 7 30 30 C 1.37979 * 119.13491 * 359.47232 * 29 9 8 31 31 N 1.31906 * 120.97747 * 0.54473 * 30 29 9 32 32 H 1.09005 * 109.46545 * 60.00050 * 1 2 3 33 33 H 1.08996 * 109.47165 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46752 * 300.00165 * 1 2 3 35 35 H 1.09004 * 109.47196 * 239.99950 * 2 1 3 36 36 H 1.08997 * 109.47087 * 120.00225 * 2 1 3 37 37 H 1.09000 * 109.46557 * 59.99591 * 5 3 2 38 38 H 1.08996 * 109.47032 * 179.97438 * 5 3 2 39 39 H 1.09000 * 109.46990 * 300.00515 * 5 3 2 40 40 H 1.07993 * 120.52791 * 0.02562 * 8 7 6 41 41 H 1.08996 * 110.31476 * 300.90677 * 13 12 10 42 42 H 1.08998 * 110.31553 * 63.09653 * 13 12 10 43 43 H 1.09002 * 112.36785 * 191.50964 * 16 14 13 44 44 H 1.09006 * 112.44670 * 64.09417 * 16 14 13 45 45 H 1.09003 * 110.31241 * 47.67446 * 19 17 12 46 46 H 1.08996 * 110.31255 * 169.85734 * 19 17 12 47 47 H 0.97004 * 119.99608 * 180.02562 * 24 23 21 48 48 H 1.08000 * 120.43205 * 179.72881 * 29 9 8 49 49 H 1.07995 * 119.50837 * 180.27632 * 30 29 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5649 1.4443 0.1258 6 8 1.6621 2.0813 -1.2211 7 6 1.4507 3.4209 -1.1756 8 6 1.0807 4.0971 -2.3311 9 6 0.8674 5.4750 -2.2684 10 6 0.4721 6.2391 -3.4745 11 8 0.2169 5.6535 -4.5082 12 7 0.3902 7.5835 -3.4238 13 6 0.5448 8.4387 -2.2274 14 6 0.3062 9.8946 -2.7346 15 1 0.0331 10.6376 -1.9854 16 6 -0.7554 9.6070 -3.8562 17 6 0.1187 8.5096 -4.5628 18 1 -0.3016 8.0565 -5.4606 19 6 1.4575 9.2898 -4.7455 20 7 1.5139 10.2019 -3.5565 21 6 2.4849 11.1267 -3.2789 22 1 2.4195 11.7260 -2.3827 23 6 3.5526 11.2949 -4.1499 24 7 3.6320 10.5650 -5.2423 25 14 4.8768 12.5571 -3.7716 26 1 4.5568 13.2423 -2.4936 27 1 6.1908 11.8755 -3.6529 28 1 4.9350 13.5571 -4.8678 29 6 1.0428 6.1164 -1.0367 30 6 1.4064 5.3686 0.0644 31 7 1.5994 4.0674 -0.0323 32 1 -0.3632 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8899 37 1 3.9995 0.9051 -0.7160 38 1 3.9283 2.4719 0.1253 39 1 3.8532 0.9569 1.0572 40 1 0.9599 3.5651 -3.2631 41 1 -0.1960 8.1724 -1.4736 42 1 1.5514 8.3421 -1.8207 43 1 -0.9294 10.4732 -4.4945 44 1 -1.6849 9.2024 -3.4555 45 1 2.3002 8.5985 -4.7542 46 1 1.4340 9.8709 -5.6674 47 1 4.3783 10.6823 -5.8507 48 1 0.8915 7.1821 -0.9485 49 1 1.5390 5.8566 1.0186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032721580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:07 Heat of formation + Delta-G solvation = 18.373626 kcal Electronic energy + Delta-G solvation = -30696.914870 eV Core-core repulsion = 26626.176309 eV Total energy + Delta-G solvation = -4070.738561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.18648 -41.34589 -39.70243 -38.94197 -35.59802 -35.18582 -34.09333 -33.00346 -31.67990 -30.82666 -30.44380 -30.27606 -27.10474 -26.49217 -25.09471 -24.91196 -24.05785 -22.78783 -21.64114 -21.43264 -20.59373 -19.68960 -18.69278 -18.26177 -17.51100 -17.13659 -16.81927 -16.59828 -16.56165 -16.26741 -15.72041 -15.59727 -15.13609 -14.95304 -14.93225 -14.91030 -14.61007 -14.15857 -13.90644 -13.62601 -13.56099 -13.40995 -13.12925 -12.99608 -12.89556 -12.76759 -12.75374 -12.69475 -12.23326 -12.13890 -12.04690 -11.94070 -11.86818 -11.70422 -11.61178 -11.49500 -11.35584 -11.05016 -10.82286 -10.56784 -9.67296 -9.55533 -8.90057 -7.83377 -5.18205 -0.42086 0.07921 1.48314 1.48796 1.58347 1.59203 1.78270 2.08880 2.49497 2.73766 3.16150 3.28582 3.35276 3.41360 3.73345 3.75145 3.78004 3.88544 3.96261 3.97974 4.01338 4.09430 4.18620 4.22859 4.41486 4.48894 4.55224 4.56644 4.62895 4.66918 4.70374 4.76036 4.80368 4.87783 4.99197 5.00514 5.03096 5.04356 5.11740 5.14410 5.19260 5.23490 5.35782 5.37300 5.46644 5.50549 5.66264 6.07574 6.21580 6.47972 6.70373 6.93421 7.00883 7.71238 8.41998 9.28596 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.002643 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.225878 B =10592.415945 C =11396.025440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.088 0.912 5 C -0.166 4.166 6 O -0.311 6.311 7 C 0.316 3.684 8 C -0.158 4.158 9 C -0.057 4.057 10 C 0.564 3.436 11 O -0.583 6.583 12 N -0.596 5.596 13 C 0.075 3.925 14 C 0.138 3.862 15 H 0.145 0.855 16 C -0.129 4.129 17 C 0.099 3.901 18 H 0.113 0.887 19 C 0.187 3.813 20 N -0.618 5.618 21 C -0.222 4.222 22 H 0.100 0.900 23 C -0.074 4.074 24 N -0.959 5.959 25 Si 0.973 3.027 26 H -0.255 1.255 27 H -0.303 1.303 28 H -0.300 1.300 29 C -0.202 4.202 30 C 0.145 3.855 31 N -0.529 5.529 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.105 0.895 45 H -0.001 1.001 46 H 0.024 0.976 47 H 0.242 0.758 48 H 0.187 0.813 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 -14.022 16.499 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.106 0.894 5 C -0.223 4.223 6 O -0.219 6.219 7 C 0.137 3.863 8 C -0.180 4.180 9 C -0.067 4.067 10 C 0.353 3.647 11 O -0.464 6.464 12 N -0.327 5.327 13 C -0.048 4.048 14 C 0.032 3.968 15 H 0.163 0.837 16 C -0.168 4.168 17 C -0.004 4.004 18 H 0.131 0.869 19 C 0.061 3.939 20 N -0.343 5.343 21 C -0.351 4.351 22 H 0.118 0.882 23 C -0.266 4.266 24 N -0.608 5.608 25 Si 0.803 3.197 26 H -0.179 1.179 27 H -0.231 1.231 28 H -0.227 1.227 29 C -0.221 4.221 30 C -0.010 4.010 31 N -0.253 5.253 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.153 0.847 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.123 0.877 45 H 0.017 0.983 46 H 0.042 0.958 47 H 0.051 0.949 48 H 0.204 0.796 49 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -8.306 -14.969 16.401 23.708 hybrid contribution 1.220 0.920 -1.591 2.206 sum -7.086 -14.049 14.810 21.609 Atomic orbital electron populations 1.21753 0.95416 1.02454 1.01420 1.21727 0.96590 0.92958 1.04207 1.22691 0.95826 0.93946 0.85223 0.89407 1.22207 0.94384 1.02127 1.03623 1.86296 1.82425 1.15517 1.37634 1.19554 0.92218 0.85215 0.89275 1.21035 1.04699 0.93407 0.98866 1.20023 0.99238 0.93128 0.94337 1.18144 0.77650 0.81117 0.87752 1.90711 1.52706 1.69401 1.33614 1.49115 1.67408 1.03909 1.12285 1.23768 1.01841 0.92115 0.87074 1.23653 0.85946 0.93223 0.93964 0.83750 1.24091 0.97310 0.97157 0.98271 1.24290 0.97162 0.88357 0.90610 0.86906 1.21872 0.91586 0.90206 0.90228 1.46003 1.23822 1.41528 1.22912 1.19605 0.99177 1.11143 1.05192 0.88207 1.25630 1.01507 1.02044 0.97444 1.70142 1.32330 1.44174 1.14192 0.85068 0.78620 0.78246 0.77772 1.17913 1.23126 1.22740 1.23623 1.01767 1.04987 0.91750 1.23113 0.90982 0.87010 0.99931 1.67227 1.19587 1.12703 1.25797 0.94238 0.90987 0.92520 0.91141 0.87496 0.92182 0.93672 0.88671 0.84721 0.86599 0.91048 0.89818 0.87717 0.98293 0.95805 0.94880 0.79617 0.77566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.81 71.98 0.71 -1.61 16 2 C -0.12 -1.69 5.64 30.59 0.17 -1.51 16 3 C 0.08 1.52 2.49 30.59 0.08 1.59 16 4 H 0.09 1.72 6.98 -2.39 -0.02 1.71 16 5 C -0.17 -2.89 9.53 71.98 0.69 -2.20 16 6 O -0.31 -8.16 9.30 -90.10 -0.84 -9.00 16 7 C 0.32 8.90 7.45 84.80 0.63 9.54 16 8 C -0.16 -5.04 9.61 22.75 0.22 -4.82 16 9 C -0.06 -1.80 5.91 -19.90 -0.12 -1.91 16 10 C 0.56 21.30 7.87 86.88 0.68 21.99 16 11 O -0.58 -26.02 16.80 -3.75 -0.06 -26.09 16 12 N -0.60 -20.82 2.94 -771.37 -2.27 -23.08 16 13 C 0.08 2.10 4.25 87.16 0.37 2.47 16 14 C 0.14 4.27 5.52 46.93 0.26 4.52 16 15 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 16 C -0.13 -3.73 6.82 33.46 0.23 -3.50 16 17 C 0.10 3.68 5.19 46.93 0.24 3.92 16 18 H 0.11 4.23 8.04 -2.39 -0.02 4.21 16 19 C 0.19 9.01 4.88 86.75 0.42 9.44 16 20 N -0.62 -27.90 3.07 -643.18 -1.97 -29.88 16 21 C -0.22 -11.20 10.38 84.03 0.87 -10.33 16 22 H 0.10 4.58 7.83 -2.91 -0.02 4.55 16 23 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 24 N -0.96 -57.53 10.57 21.65 0.23 -57.30 16 25 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 29 C -0.20 -4.84 8.84 22.63 0.20 -4.64 16 30 C 0.15 2.96 11.17 84.62 0.94 3.91 16 31 N -0.53 -12.95 8.61 -309.13 -2.66 -15.61 16 32 H 0.04 0.76 7.82 -2.38 -0.02 0.74 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.13 4.57 7.75 -2.91 -0.02 4.55 16 41 H 0.12 2.16 6.89 -2.39 -0.02 2.14 16 42 H 0.07 2.21 6.89 -2.39 -0.02 2.20 16 43 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 45 H 0.00 -0.07 7.73 -2.39 -0.02 -0.09 16 46 H 0.02 1.30 7.47 -2.39 -0.02 1.28 16 47 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.19 3.77 3.00 -2.91 -0.01 3.76 16 49 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -74.30 391.21 2.47 -71.82 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.95 Total: 19.52 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.07 Total: 23.28 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -6.67 Total: -125.87 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.90 Total: -35.08 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -74.30 2.47 -71.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032721580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.198 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds