Wall clock time and date at job start Wed Apr 1 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 120.00211 * 2 1 4 4 N 1.46502 * 109.46768 * 124.99719 * 3 2 1 5 5 C 1.35533 * 125.67802 * 259.88645 * 4 3 2 6 6 C 1.35451 * 108.87343 * 180.30865 * 5 4 3 7 7 C 1.39835 * 107.86202 * 359.73427 * 6 5 4 8 8 C 1.37652 * 125.68089 * 79.74261 * 4 3 2 9 9 C 1.46678 * 126.22907 * 359.95594 * 8 4 3 10 10 O 1.21694 * 120.00180 * 4.85327 * 9 8 4 11 11 N 1.34776 * 119.99902 * 184.85752 * 9 8 4 12 12 C 1.46501 * 120.00333 * 175.05334 * 11 9 8 13 13 C 1.52998 * 109.47301 * 179.97438 * 12 11 9 14 14 H 1.08992 * 110.52342 * 307.79417 * 13 12 11 15 15 C 1.55056 * 110.58450 * 184.99843 * 13 12 11 16 16 C 1.55028 * 102.13280 * 204.93608 * 15 13 12 17 17 C 1.53329 * 103.78354 * 20.86389 * 16 15 13 18 18 C 1.52653 * 115.55828 * 133.64444 * 17 16 15 19 19 N 1.47216 * 87.77920 * 90.04528 * 18 17 16 20 20 C 1.36935 * 135.96658 * 206.40863 * 19 18 17 21 21 H 1.08004 * 119.99946 * 7.20720 * 20 19 18 22 22 C 1.38816 * 120.00312 * 187.20198 * 20 19 18 23 23 N 1.31618 * 120.00159 * 194.62041 * 22 20 19 24 24 Si 1.86797 * 119.99741 * 14.61748 * 22 20 19 25 25 H 1.48501 * 109.47303 * 270.00059 * 24 22 20 26 26 H 1.48501 * 109.47245 * 149.99971 * 24 22 20 27 27 H 1.48504 * 109.47203 * 29.99884 * 24 22 20 28 28 C 1.47220 * 88.07025 * 26.66646 * 19 18 17 29 29 O 1.42839 * 108.33047 * 1.60598 * 17 16 15 30 30 H 1.07994 * 119.99871 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.99777 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99852 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.46921 * 4.99466 * 3 2 1 34 34 H 1.08999 * 109.46894 * 244.99868 * 3 2 1 35 35 H 1.08009 * 125.56530 * 0.02562 * 5 4 3 36 36 H 1.07997 * 126.06581 * 179.69427 * 6 5 4 37 37 H 1.08003 * 126.45670 * 180.02562 * 7 6 5 38 38 H 0.97000 * 120.00074 * 355.05910 * 11 9 8 39 39 H 1.08999 * 109.46989 * 59.99882 * 12 11 9 40 40 H 1.08998 * 109.46814 * 299.99974 * 12 11 9 41 41 H 1.08999 * 110.86888 * 86.77549 * 15 13 12 42 42 H 1.09001 * 110.87218 * 323.09627 * 15 13 12 43 43 H 1.08991 * 110.56726 * 262.29147 * 16 15 13 44 44 H 1.09000 * 110.68548 * 139.49662 * 16 15 13 45 45 H 1.08997 * 113.50361 * 335.31696 * 18 17 16 46 46 H 1.09003 * 113.55239 * 204.78372 * 18 17 16 47 47 H 0.97001 * 119.99730 * 354.92774 * 23 22 20 48 48 H 1.09002 * 113.50195 * 88.05641 * 28 19 18 49 49 H 1.08997 * 113.50584 * 218.60569 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.7859 1.9665 2.3109 6 6 3.8646 1.7752 3.1074 7 6 4.7816 0.9866 2.4056 8 6 4.2232 0.7142 1.1749 9 6 4.8310 -0.0833 0.1044 10 8 4.2774 -0.1749 -0.9755 11 7 6.0026 -0.7148 0.3167 12 6 6.5558 -1.5981 -0.7129 13 6 7.8821 -2.1833 -0.2239 14 1 8.5495 -1.3896 0.1117 15 6 8.5526 -3.0231 -1.3417 16 6 9.4366 -4.0025 -0.5277 17 6 8.7987 -3.9977 0.8666 18 6 8.5885 -5.3708 1.4995 19 7 9.9319 -5.2419 2.0878 20 6 10.9106 -6.1038 2.5054 21 1 10.8113 -7.1635 2.3218 22 6 12.0305 -5.6155 3.1646 23 7 13.0928 -6.3786 3.3109 24 14 12.0297 -3.8755 3.8439 25 1 12.5378 -2.9397 2.8088 26 1 12.9050 -3.8113 5.0417 27 1 10.6455 -3.4920 4.2211 28 6 9.7598 -3.7807 2.0365 29 8 7.6552 -3.1423 0.8345 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5399 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6214 1.4025 -0.9314 35 1 1.9059 2.5361 2.5712 36 1 3.9938 2.1635 4.1069 37 1 5.7456 0.6533 2.7609 38 1 6.4795 -0.5846 1.1512 39 1 6.7252 -1.0290 -1.6270 40 1 5.8533 -2.4069 -0.9134 41 1 9.1643 -2.3926 -1.9870 42 1 7.8054 -3.5648 -1.9216 43 1 10.4639 -3.6416 -0.4798 44 1 9.4028 -5.0023 -0.9606 45 1 8.5087 -6.1776 0.7710 46 1 7.7895 -5.3911 2.2407 47 1 13.0678 -7.3050 3.0241 48 1 9.2787 -3.3683 2.9234 49 1 10.6684 -3.2453 1.7612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053611368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:21 Heat of formation + Delta-G solvation = 57.956598 kcal Electronic energy + Delta-G solvation = -30007.973207 eV Core-core repulsion = 25938.951092 eV Total energy + Delta-G solvation = -4069.022115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65669 -40.27315 -39.12871 -36.95647 -35.66464 -34.62044 -32.36038 -32.07633 -31.62475 -30.35672 -28.83872 -27.00756 -26.38234 -25.46957 -24.12380 -22.42558 -21.52956 -21.31956 -20.84647 -20.55027 -19.56345 -19.12043 -18.20542 -17.46553 -16.71676 -16.21789 -15.95280 -15.87179 -15.73327 -15.13375 -14.81950 -14.51417 -14.33170 -14.27192 -13.80626 -13.71159 -13.48040 -13.29719 -13.09011 -12.99577 -12.85608 -12.59248 -12.34837 -12.19480 -11.98311 -11.63232 -11.60459 -11.47139 -11.20953 -11.03063 -10.70893 -10.48609 -10.31062 -10.20394 -9.92308 -9.86494 -9.29954 -9.29148 -9.01085 -8.91910 -8.73573 -8.44282 -7.21588 -6.33530 -3.25655 1.25028 1.64646 2.50037 2.52882 3.17473 3.24748 3.39028 3.47878 3.61731 3.81090 4.29415 4.45810 4.56265 4.57315 4.59869 4.68885 4.73123 4.86648 4.87678 4.89436 4.97608 5.11803 5.12818 5.15242 5.23681 5.36886 5.39242 5.45892 5.48033 5.55555 5.78950 5.82829 5.88058 5.94256 6.12785 6.16014 6.18694 6.22143 6.24146 6.25853 6.30534 6.33310 6.37386 6.51719 6.56209 6.73811 6.94959 7.06294 7.30903 7.33571 8.01786 8.21090 8.94562 9.47186 10.33223 11.16851 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.002334 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.321372 B =11993.735360 C =12815.707686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.161 4.161 3 C 0.130 3.870 4 N -0.406 5.406 5 C 0.015 3.985 6 C -0.207 4.207 7 C -0.137 4.137 8 C -0.051 4.051 9 C 0.589 3.411 10 O -0.553 6.553 11 N -0.712 5.712 12 C 0.133 3.867 13 C 0.061 3.939 14 H 0.078 0.922 15 C -0.145 4.145 16 C -0.112 4.112 17 C 0.061 3.939 18 C 0.129 3.871 19 N -0.616 5.616 20 C -0.302 4.302 21 H 0.083 0.917 22 C -0.023 4.023 23 N -0.931 5.931 24 Si 1.061 2.939 25 H -0.294 1.294 26 H -0.295 1.295 27 H -0.280 1.280 28 C 0.092 3.908 29 O -0.355 6.355 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.407 0.593 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.043 0.957 47 H 0.261 0.739 48 H 0.052 0.948 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.111 18.429 -7.932 29.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.180 4.180 3 C 0.010 3.990 4 N -0.079 5.079 5 C -0.120 4.120 6 C -0.231 4.231 7 C -0.164 4.164 8 C -0.164 4.164 9 C 0.377 3.623 10 O -0.433 6.433 11 N -0.363 5.363 12 C 0.009 3.991 13 C 0.003 3.997 14 H 0.095 0.905 15 C -0.184 4.184 16 C -0.150 4.150 17 C 0.020 3.980 18 C 0.002 3.998 19 N -0.346 5.346 20 C -0.428 4.428 21 H 0.101 0.899 22 C -0.222 4.222 23 N -0.573 5.573 24 Si 0.892 3.108 25 H -0.222 1.222 26 H -0.222 1.222 27 H -0.206 1.206 28 C -0.034 4.034 29 O -0.273 6.273 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.184 0.816 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.243 0.757 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.070 0.930 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.780 19.246 -8.055 30.161 hybrid contribution -0.605 -1.190 -0.188 1.348 sum -22.385 18.056 -8.243 29.918 Atomic orbital electron populations 1.23893 0.95478 1.02322 0.99679 1.23093 0.95973 0.98504 1.00438 1.21110 0.91765 0.96753 0.89412 1.43957 1.13470 1.37666 1.12817 1.22014 1.01506 1.02586 0.85848 1.20839 0.95052 1.06197 1.00974 1.21421 1.00529 1.01735 0.92705 1.20032 0.89838 1.08588 0.97977 1.16963 0.80727 0.78646 0.85988 1.90787 1.63000 1.63787 1.25717 1.45587 1.22479 1.46987 1.21284 1.21444 0.94017 0.93032 0.90574 1.23376 0.95093 0.92709 0.88554 0.90467 1.23142 0.99462 0.98096 0.97653 1.22374 0.99504 1.00419 0.92684 1.23648 0.86337 0.92710 0.95263 1.22384 0.89346 0.92795 0.95233 1.45930 1.13054 1.00934 1.74716 1.20098 0.97160 0.90100 1.35446 0.89904 1.25773 0.91734 1.06664 0.98069 1.70907 1.26712 1.08283 1.51358 0.83814 0.75358 0.74893 0.76740 1.22157 1.22214 1.20602 1.23131 0.96336 0.88320 0.95570 1.88781 1.40765 1.44095 1.53664 0.87775 0.88357 0.86594 0.88929 0.87088 0.81586 0.83938 0.83724 0.75706 0.89949 0.90404 0.90036 0.90254 0.90063 0.89978 0.93178 0.93903 0.92825 0.93017 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 14.32 29.01 0.42 -0.77 16 2 C -0.16 -1.43 9.57 -36.03 -0.34 -1.77 16 3 C 0.13 1.09 5.82 -5.19 -0.03 1.06 16 4 N -0.41 -4.01 2.75 -114.15 -0.31 -4.33 16 5 C 0.02 0.13 11.36 -16.91 -0.19 -0.06 16 6 C -0.21 -1.85 10.81 -39.98 -0.43 -2.29 16 7 C -0.14 -1.39 10.35 -39.12 -0.41 -1.80 16 8 C -0.05 -0.58 6.87 -81.98 -0.56 -1.15 16 9 C 0.59 7.33 7.77 -12.85 -0.10 7.23 16 10 O -0.55 -8.00 14.67 5.19 0.08 -7.92 16 11 N -0.71 -7.89 5.54 -61.62 -0.34 -8.23 16 12 C 0.13 1.45 5.42 -4.04 -0.02 1.43 16 13 C 0.06 0.72 3.38 -25.65 -0.09 0.64 16 14 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 15 C -0.15 -1.63 6.60 -24.57 -0.16 -1.80 16 16 C -0.11 -1.69 6.46 -25.49 -0.16 -1.85 16 17 C 0.06 1.08 1.66 -90.66 -0.15 0.93 16 18 C 0.13 2.62 8.20 -8.03 -0.07 2.55 16 19 N -0.62 -15.15 3.59 -184.61 -0.66 -15.81 16 20 C -0.30 -8.64 11.03 -15.06 -0.17 -8.81 16 21 H 0.08 2.49 8.06 -52.48 -0.42 2.07 16 22 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 23 N -0.93 -29.17 13.70 55.49 0.76 -28.41 16 24 Si 1.06 26.47 25.49 -169.99 -4.33 22.13 16 25 H -0.29 -6.97 6.98 56.52 0.39 -6.58 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.53 5.57 56.52 0.32 -6.22 16 28 C 0.09 1.96 5.11 -7.88 -0.04 1.92 16 29 O -0.36 -5.53 11.02 -35.23 -0.39 -5.92 16 30 H 0.10 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.10 0.48 7.84 -52.49 -0.41 0.07 16 32 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.09 0.51 7.75 -51.93 -0.40 0.11 16 34 H 0.11 1.08 6.83 -51.93 -0.35 0.72 16 35 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.15 1.23 7.45 -52.48 -0.39 0.84 16 38 H 0.41 4.04 7.37 -40.82 -0.30 3.74 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 43 H 0.08 1.28 7.82 -51.93 -0.41 0.87 16 44 H 0.08 1.25 7.81 -51.93 -0.41 0.84 16 45 H 0.05 0.97 7.91 -51.93 -0.41 0.56 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 48 H 0.05 1.11 6.99 -51.93 -0.36 0.75 16 49 H 0.05 1.12 5.98 -51.93 -0.31 0.80 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -34.45 398.23 -9.46 -43.91 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.65 Total: 3.89 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.61 Total: -5.32 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.56 Total: -56.77 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.31 Total: -13.84 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.33 Total: 22.13 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.45 -9.46 -43.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053611368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.865 kcal (2) G-P(sol) polarization free energy of solvation -34.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds