Wall clock time and date at job start Wed Apr 1 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99913 * 2 1 4 4 N 1.46504 * 109.46807 * 122.54509 * 3 2 1 5 5 C 1.35526 * 125.68328 * 265.17811 * 4 3 2 6 6 C 1.35459 * 108.87584 * 180.26756 * 5 4 3 7 7 C 1.39839 * 107.86044 * 359.77092 * 6 5 4 8 8 C 1.37661 * 125.67234 * 85.04932 * 4 3 2 9 9 C 1.46669 * 126.23419 * 0.02562 * 8 4 3 10 10 O 1.21693 * 120.00429 * 334.13285 * 9 8 4 11 11 N 1.34782 * 119.99899 * 154.13784 * 9 8 4 12 12 C 1.46844 * 120.41269 * 359.27739 * 11 9 8 13 13 C 1.53365 * 109.25015 * 232.28199 * 12 11 9 14 14 C 1.52788 * 108.81247 * 306.16202 * 13 12 11 15 15 H 1.09006 * 108.96400 * 303.07098 * 14 13 12 16 16 O 1.42599 * 111.10856 * 182.53851 * 14 13 12 17 17 C 1.43147 * 113.63466 * 176.39124 * 16 14 13 18 18 C 1.53191 * 109.70076 * 61.70397 * 17 16 14 19 19 N 1.47331 * 108.81267 * 308.71473 * 18 17 16 20 20 C 1.36938 * 121.34782 * 230.30180 * 19 18 17 21 21 H 1.08003 * 120.00046 * 151.57532 * 20 19 18 22 22 C 1.38805 * 120.00091 * 331.57641 * 20 19 18 23 23 N 1.31622 * 119.99813 * 346.95755 * 22 20 19 24 24 Si 1.86800 * 120.00150 * 166.96046 * 22 20 19 25 25 H 1.48496 * 109.47532 * 59.99747 * 24 22 20 26 26 H 1.48499 * 109.47041 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47093 * 299.99684 * 24 22 20 28 28 C 1.46877 * 117.34882 * 50.32546 * 19 18 17 29 29 H 1.09005 * 109.65324 * 67.61374 * 28 19 18 30 30 C 1.47129 * 120.41253 * 179.30842 * 11 9 8 31 31 H 1.08007 * 120.00231 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.00156 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.00055 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47022 * 2.54928 * 3 2 1 35 35 H 1.08998 * 109.47237 * 242.54221 * 3 2 1 36 36 H 1.08005 * 125.56166 * 0.07263 * 5 4 3 37 37 H 1.07996 * 126.06570 * 179.79137 * 6 5 4 38 38 H 1.07999 * 126.45486 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.50432 * 352.21531 * 12 11 9 40 40 H 1.09002 * 109.50709 * 112.33990 * 12 11 9 41 41 H 1.09004 * 109.57719 * 186.36750 * 13 12 11 42 42 H 1.08996 * 109.58184 * 65.96504 * 13 12 11 43 43 H 1.09002 * 109.42812 * 181.76697 * 17 16 14 44 44 H 1.09005 * 109.42523 * 301.64929 * 17 16 14 45 45 H 1.09003 * 109.58090 * 68.56414 * 18 17 16 46 46 H 1.08994 * 109.58795 * 188.97284 * 18 17 16 47 47 H 0.97004 * 119.99570 * 180.02562 * 23 22 20 48 48 H 1.09007 * 109.72515 * 7.07680 * 30 11 9 49 49 H 1.08999 * 109.76121 * 246.43505 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9511 1.3565 1.1644 5 6 2.6586 1.9303 2.3568 6 6 3.7210 1.7866 3.1847 7 6 4.7160 1.0926 2.4891 8 6 4.2204 0.8276 1.2301 9 6 4.9205 0.1176 0.1545 10 8 4.2851 -0.4600 -0.7077 11 7 6.2679 0.1049 0.1211 12 6 7.0437 0.8121 1.1479 13 6 8.0558 1.7413 0.4665 14 6 8.8886 0.9240 -0.5198 15 1 9.3679 0.1042 0.0154 16 8 9.8874 1.7307 -1.1404 17 6 10.7532 1.0000 -2.0155 18 6 9.9365 0.3903 -3.1591 19 7 8.7972 -0.3488 -2.5879 20 6 8.5251 -1.6380 -2.9611 21 1 8.0341 -2.3079 -2.2707 22 6 8.8803 -2.0838 -4.2267 23 7 9.2387 -1.2193 -5.1523 24 14 8.8498 -3.9104 -4.6163 25 1 7.4737 -4.4346 -4.4244 26 1 9.2680 -4.1232 -6.0252 27 1 9.7828 -4.6257 -3.7091 28 6 7.9641 0.3523 -1.6021 29 1 7.4242 1.1641 -2.0896 30 6 6.9797 -0.6171 -0.9451 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3560 2.1331 0.0457 35 1 2.6555 1.3829 -0.9119 36 1 1.7309 2.4246 2.6052 37 1 3.7876 2.1443 4.2016 38 1 5.6891 0.8159 2.8671 39 1 6.3708 1.4012 1.7711 40 1 7.5735 0.0879 1.7669 41 1 8.7097 2.1832 1.2183 42 1 7.5257 2.5294 -0.0683 43 1 11.5058 1.6732 -2.4261 44 1 11.2453 0.2038 -1.4568 45 1 9.5688 1.1842 -3.8092 46 1 10.5635 -0.2928 -3.7321 47 1 9.4865 -1.5309 -6.0369 48 1 6.2657 -0.9754 -1.6868 49 1 7.5227 -1.4610 -0.5197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074268479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:08 Heat of formation + Delta-G solvation = 48.646957 kcal Electronic energy + Delta-G solvation = -31714.947530 eV Core-core repulsion = 27645.521719 eV Total energy + Delta-G solvation = -4069.425811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61802 -39.72453 -38.27948 -36.20917 -35.27571 -34.69224 -32.10427 -31.41934 -31.33695 -30.20454 -29.04255 -26.96213 -26.28962 -25.31280 -23.98582 -22.55975 -21.88766 -20.95643 -20.63216 -20.27946 -19.63058 -18.89788 -17.29896 -16.73942 -16.44132 -15.78355 -15.43957 -15.33907 -15.19265 -15.01780 -14.51846 -14.43773 -14.11184 -13.84980 -13.65918 -13.50114 -13.22277 -13.05201 -12.91398 -12.78519 -12.74989 -12.39160 -12.16475 -12.06654 -11.52626 -11.42613 -11.29063 -10.95590 -10.93228 -10.76786 -10.53952 -10.24163 -10.23033 -9.99613 -9.80551 -9.70154 -9.57935 -8.97455 -8.81769 -8.54163 -8.41889 -8.17614 -6.71545 -5.83715 -3.31008 1.50347 1.86941 2.63189 2.71647 3.34380 3.36794 3.41335 3.41824 3.43463 4.28929 4.43337 4.50016 4.59016 4.65704 4.89622 4.97421 5.07638 5.22300 5.25654 5.29790 5.33186 5.35906 5.39879 5.46816 5.62585 5.67426 5.76501 5.77623 5.87312 5.94706 5.97883 6.06529 6.13053 6.17179 6.28288 6.34305 6.37068 6.40389 6.49110 6.61519 6.65122 6.78387 6.88445 6.90943 7.12709 7.14178 7.51850 7.60398 7.70767 7.91345 8.32590 8.35569 9.10310 9.72945 10.31335 11.24185 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.003591 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.897154 B = 7794.343668 C = 9502.199847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.131 3.869 4 N -0.406 5.406 5 C 0.010 3.990 6 C -0.206 4.206 7 C -0.161 4.161 8 C -0.034 4.034 9 C 0.582 3.418 10 O -0.542 6.542 11 N -0.595 5.595 12 C 0.078 3.922 13 C -0.123 4.123 14 C 0.076 3.924 15 H 0.052 0.948 16 O -0.389 6.389 17 C 0.039 3.961 18 C 0.143 3.857 19 N -0.588 5.588 20 C -0.259 4.259 21 H 0.071 0.929 22 C 0.008 3.992 23 N -0.903 5.903 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.138 3.862 29 H 0.036 0.964 30 C 0.127 3.873 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.158 0.842 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.027 0.973 46 H 0.096 0.904 47 H 0.256 0.744 48 H 0.103 0.897 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 7.580 16.051 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.176 4.176 3 C 0.011 3.989 4 N -0.078 5.078 5 C -0.125 4.125 6 C -0.230 4.230 7 C -0.186 4.186 8 C -0.148 4.148 9 C 0.370 3.630 10 O -0.421 6.421 11 N -0.327 5.327 12 C -0.045 4.045 13 C -0.162 4.162 14 C 0.016 3.984 15 H 0.070 0.930 16 O -0.309 6.309 17 C -0.039 4.039 18 C 0.018 3.982 19 N -0.312 5.312 20 C -0.388 4.388 21 H 0.089 0.911 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.734 3.266 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.209 1.209 28 C 0.030 3.970 29 H 0.054 0.946 30 C 0.005 3.995 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.182 0.818 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.045 0.955 46 H 0.114 0.886 47 H 0.066 0.934 48 H 0.121 0.879 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.672 7.385 15.070 19.888 hybrid contribution 0.104 -1.173 -0.466 1.267 sum -10.567 6.212 14.604 19.067 Atomic orbital electron populations 1.23875 0.95503 1.02135 1.00275 1.23175 0.95875 0.98795 0.99761 1.21054 0.92841 0.96875 0.88144 1.43980 1.11425 1.41012 1.11426 1.21949 1.01182 1.04109 0.85218 1.20821 0.94296 1.07558 1.00368 1.21662 1.00251 1.03785 0.92938 1.20192 0.87554 1.09595 0.97481 1.17034 0.82023 0.80234 0.83684 1.90824 1.65924 1.45729 1.39615 1.47921 1.04592 1.51730 1.28462 1.22691 0.94966 0.95853 0.90963 1.21858 0.97265 0.98529 0.98540 1.22450 0.89699 0.92718 0.93484 0.93040 1.87742 1.45092 1.36082 1.61936 1.23340 0.92492 0.95306 0.92783 1.21438 0.89286 0.95502 0.92019 1.44006 1.27789 1.11976 1.47470 1.19090 1.37553 0.86181 0.95976 0.91144 1.25101 1.01052 0.97895 0.95068 1.69989 1.49117 1.32444 1.03079 0.86340 0.78190 0.84955 0.77142 1.20669 1.21527 1.20895 1.21290 0.91131 0.93969 0.90608 0.94623 1.21784 0.95103 0.93713 0.88879 0.88533 0.87866 0.85907 0.88898 0.87702 0.81778 0.84084 0.82507 0.86208 0.91145 0.90238 0.90989 0.90111 0.94138 0.95458 0.88617 0.93430 0.87908 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 14.32 29.02 0.42 -1.18 16 2 C -0.16 -1.80 9.48 -36.02 -0.34 -2.14 16 3 C 0.13 1.46 5.81 -5.19 -0.03 1.43 16 4 N -0.41 -4.91 2.74 -114.15 -0.31 -5.22 16 5 C 0.01 0.10 11.37 -16.91 -0.19 -0.10 16 6 C -0.21 -2.03 10.81 -39.97 -0.43 -2.46 16 7 C -0.16 -1.83 8.53 -39.12 -0.33 -2.16 16 8 C -0.03 -0.48 6.52 -81.98 -0.53 -1.01 16 9 C 0.58 9.87 7.48 -12.85 -0.10 9.77 16 10 O -0.54 -10.81 14.17 5.20 0.07 -10.74 16 11 N -0.59 -9.74 2.98 -174.23 -0.52 -10.26 16 12 C 0.08 0.99 5.29 -3.67 -0.02 0.97 16 13 C -0.12 -1.76 5.82 -26.65 -0.16 -1.91 16 14 C 0.08 1.40 2.47 -26.63 -0.07 1.33 16 15 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 16 O -0.39 -7.75 10.49 -35.23 -0.37 -8.12 16 17 C 0.04 0.76 6.96 37.26 0.26 1.02 16 18 C 0.14 3.43 5.41 -3.49 -0.02 3.41 16 19 N -0.59 -14.68 3.04 -164.38 -0.50 -15.18 16 20 C -0.26 -6.94 8.86 -15.06 -0.13 -7.07 16 21 H 0.07 1.84 6.29 -52.48 -0.33 1.51 16 22 C 0.01 0.22 5.04 -17.43 -0.09 0.13 16 23 N -0.90 -25.91 11.09 55.49 0.62 -25.29 16 24 Si 0.90 21.61 29.57 -169.99 -5.03 16.58 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.14 2.96 3.02 -67.53 -0.20 2.76 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 30 C 0.13 2.51 4.50 -3.71 -0.02 2.49 16 31 H 0.10 0.67 7.84 -52.48 -0.41 0.26 16 32 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.12 1.72 7.56 -52.49 -0.40 1.33 16 34 H 0.09 0.74 7.77 -51.93 -0.40 0.33 16 35 H 0.10 1.37 7.36 -51.93 -0.38 0.99 16 36 H 0.16 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.16 1.49 5.74 -52.49 -0.30 1.18 16 39 H 0.12 1.30 3.41 -51.93 -0.18 1.12 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 2.49 6.22 -51.93 -0.32 2.17 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.10 2.34 6.80 -51.93 -0.35 1.99 16 49 H 0.07 1.46 7.36 -51.93 -0.38 1.08 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -32.18 381.07 -9.53 -41.71 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.25 Total: 5.48 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.99 Total: 5.29 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.72 Total: -55.95 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.30 Total: -18.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.18 -9.53 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074268479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.361 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds