Wall clock time and date at job start Wed Apr 1 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99913 * 2 1 4 4 N 1.46504 * 109.46807 * 122.54509 * 3 2 1 5 5 C 1.35526 * 125.68328 * 265.17811 * 4 3 2 6 6 C 1.35459 * 108.87584 * 180.26756 * 5 4 3 7 7 C 1.39839 * 107.86044 * 359.77092 * 6 5 4 8 8 C 1.37661 * 125.67234 * 85.04932 * 4 3 2 9 9 C 1.46669 * 126.23419 * 0.02562 * 8 4 3 10 10 O 1.21693 * 120.00429 * 334.13285 * 9 8 4 11 11 N 1.34782 * 119.99899 * 154.13784 * 9 8 4 12 12 C 1.46844 * 120.41269 * 359.27739 * 11 9 8 13 13 C 1.53365 * 109.25015 * 232.28199 * 12 11 9 14 14 C 1.52788 * 108.81247 * 306.16202 * 13 12 11 15 15 H 1.09006 * 108.96400 * 303.07098 * 14 13 12 16 16 O 1.42599 * 111.10856 * 182.53851 * 14 13 12 17 17 C 1.43147 * 113.63466 * 176.39124 * 16 14 13 18 18 C 1.53191 * 109.70076 * 61.70397 * 17 16 14 19 19 N 1.47331 * 108.81267 * 308.71473 * 18 17 16 20 20 C 1.36938 * 121.34782 * 230.30180 * 19 18 17 21 21 H 1.08003 * 120.00046 * 151.57532 * 20 19 18 22 22 C 1.38805 * 120.00091 * 331.57641 * 20 19 18 23 23 N 1.31622 * 119.99813 * 346.95755 * 22 20 19 24 24 Si 1.86800 * 120.00150 * 166.96046 * 22 20 19 25 25 H 1.48496 * 109.47532 * 59.99747 * 24 22 20 26 26 H 1.48499 * 109.47041 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47093 * 299.99684 * 24 22 20 28 28 C 1.46877 * 117.34882 * 50.32546 * 19 18 17 29 29 H 1.09005 * 109.65324 * 67.61374 * 28 19 18 30 30 C 1.47129 * 120.41253 * 179.30842 * 11 9 8 31 31 H 1.08007 * 120.00231 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.00156 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.00055 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.47022 * 2.54928 * 3 2 1 35 35 H 1.08998 * 109.47237 * 242.54221 * 3 2 1 36 36 H 1.08005 * 125.56166 * 0.07263 * 5 4 3 37 37 H 1.07996 * 126.06570 * 179.79137 * 6 5 4 38 38 H 1.07999 * 126.45486 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.50432 * 352.21531 * 12 11 9 40 40 H 1.09002 * 109.50709 * 112.33990 * 12 11 9 41 41 H 1.09004 * 109.57719 * 186.36750 * 13 12 11 42 42 H 1.08996 * 109.58184 * 65.96504 * 13 12 11 43 43 H 1.09002 * 109.42812 * 181.76697 * 17 16 14 44 44 H 1.09005 * 109.42523 * 301.64929 * 17 16 14 45 45 H 1.09003 * 109.58090 * 68.56414 * 18 17 16 46 46 H 1.08994 * 109.58795 * 188.97284 * 18 17 16 47 47 H 0.97004 * 119.99570 * 180.02562 * 23 22 20 48 48 H 1.09007 * 109.72515 * 7.07680 * 30 11 9 49 49 H 1.08999 * 109.76121 * 246.43505 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9511 1.3565 1.1644 5 6 2.6586 1.9303 2.3568 6 6 3.7210 1.7866 3.1847 7 6 4.7160 1.0926 2.4891 8 6 4.2204 0.8276 1.2301 9 6 4.9205 0.1176 0.1545 10 8 4.2851 -0.4600 -0.7077 11 7 6.2679 0.1049 0.1211 12 6 7.0437 0.8121 1.1479 13 6 8.0558 1.7413 0.4665 14 6 8.8886 0.9240 -0.5198 15 1 9.3679 0.1042 0.0154 16 8 9.8874 1.7307 -1.1404 17 6 10.7532 1.0000 -2.0155 18 6 9.9365 0.3903 -3.1591 19 7 8.7972 -0.3488 -2.5879 20 6 8.5251 -1.6380 -2.9611 21 1 8.0341 -2.3079 -2.2707 22 6 8.8803 -2.0838 -4.2267 23 7 9.2387 -1.2193 -5.1523 24 14 8.8498 -3.9104 -4.6163 25 1 7.4737 -4.4346 -4.4244 26 1 9.2680 -4.1232 -6.0252 27 1 9.7828 -4.6257 -3.7091 28 6 7.9641 0.3523 -1.6021 29 1 7.4242 1.1641 -2.0896 30 6 6.9797 -0.6171 -0.9451 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3560 2.1331 0.0457 35 1 2.6555 1.3829 -0.9119 36 1 1.7309 2.4246 2.6052 37 1 3.7876 2.1443 4.2016 38 1 5.6891 0.8159 2.8671 39 1 6.3708 1.4012 1.7711 40 1 7.5735 0.0879 1.7669 41 1 8.7097 2.1832 1.2183 42 1 7.5257 2.5294 -0.0683 43 1 11.5058 1.6732 -2.4261 44 1 11.2453 0.2038 -1.4568 45 1 9.5688 1.1842 -3.8092 46 1 10.5635 -0.2928 -3.7321 47 1 9.4865 -1.5309 -6.0369 48 1 6.2657 -0.9754 -1.6868 49 1 7.5227 -1.4610 -0.5197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074268479.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:07 Heat of formation + Delta-G solvation = 28.459296 kcal Electronic energy + Delta-G solvation = -31715.822933 eV Core-core repulsion = 27645.521719 eV Total energy + Delta-G solvation = -4070.301214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.55449 -41.12363 -39.74139 -37.55963 -36.58266 -36.13161 -33.67552 -33.04335 -32.33123 -31.63738 -30.25816 -28.73560 -27.16335 -26.77511 -25.58583 -24.04636 -23.33568 -22.07644 -21.77735 -21.34057 -21.10694 -19.90830 -18.73864 -18.29815 -17.75615 -17.17986 -16.94511 -16.68658 -16.49211 -16.30226 -16.07400 -15.59088 -15.47126 -15.39286 -14.88211 -14.86293 -14.70477 -14.58236 -14.06174 -13.99499 -13.75869 -13.57440 -13.42590 -13.05717 -13.01509 -12.91071 -12.83126 -12.51246 -12.42456 -12.22531 -12.21698 -12.06915 -11.92961 -11.66400 -11.26750 -11.00352 -10.76486 -10.57630 -10.55219 -9.80356 -9.62060 -9.09661 -8.75714 -7.93989 -5.44814 0.51486 1.06855 1.42555 1.44376 1.50768 1.60133 1.88256 2.26644 2.31264 2.44938 2.82676 3.21536 3.42178 3.50236 3.72500 3.82595 3.85346 3.95070 4.05224 4.15665 4.20998 4.22317 4.27103 4.38672 4.43877 4.49626 4.51709 4.55622 4.56655 4.58082 4.68571 4.80563 4.84570 4.91991 4.96501 5.04703 5.11233 5.18079 5.28075 5.30900 5.40946 5.52173 5.54508 5.57779 5.63773 5.89523 6.02808 6.23615 6.31913 6.33329 6.40338 7.02053 7.07299 7.68663 8.24758 9.11900 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.003591 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.897154 B = 7794.343668 C = 9502.199847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.190 4.190 3 C 0.134 3.866 4 N -0.414 5.414 5 C 0.024 3.976 6 C -0.210 4.210 7 C -0.147 4.147 8 C -0.080 4.080 9 C 0.574 3.426 10 O -0.589 6.589 11 N -0.596 5.596 12 C 0.078 3.922 13 C -0.114 4.114 14 C 0.081 3.919 15 H 0.059 0.941 16 O -0.392 6.392 17 C 0.051 3.949 18 C 0.147 3.853 19 N -0.605 5.605 20 C -0.264 4.264 21 H 0.073 0.927 22 C -0.045 4.045 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.270 1.270 28 C 0.136 3.864 29 H 0.000 1.000 30 C 0.144 3.856 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.202 0.798 37 H 0.173 0.827 38 H 0.178 0.822 39 H 0.147 0.853 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.110 0.890 44 H 0.051 0.949 45 H -0.005 1.005 46 H 0.072 0.928 47 H 0.252 0.748 48 H 0.060 0.940 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 8.930 20.190 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.209 4.209 3 C 0.014 3.986 4 N -0.087 5.087 5 C -0.111 4.111 6 C -0.233 4.233 7 C -0.173 4.173 8 C -0.193 4.193 9 C 0.366 3.634 10 O -0.471 6.471 11 N -0.328 5.328 12 C -0.042 4.042 13 C -0.153 4.153 14 C 0.022 3.978 15 H 0.077 0.923 16 O -0.311 6.311 17 C -0.026 4.026 18 C 0.022 3.978 19 N -0.330 5.330 20 C -0.394 4.394 21 H 0.091 0.909 22 C -0.241 4.241 23 N -0.581 5.581 24 Si 0.795 3.205 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.195 1.195 28 C 0.029 3.971 29 H 0.018 0.982 30 C 0.020 3.980 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.088 0.912 36 H 0.219 0.781 37 H 0.190 0.810 38 H 0.194 0.806 39 H 0.164 0.836 40 H 0.114 0.886 41 H 0.135 0.865 42 H 0.078 0.922 43 H 0.127 0.873 44 H 0.069 0.931 45 H 0.013 0.987 46 H 0.090 0.910 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.557 8.755 19.262 24.109 hybrid contribution 0.220 -1.540 -1.723 2.321 sum -11.337 7.215 17.539 22.095 Atomic orbital electron populations 1.24130 0.94364 1.03865 0.96297 1.22948 0.96781 0.97578 1.03553 1.21044 0.92781 0.97928 0.86870 1.44176 1.10964 1.41155 1.12430 1.22708 1.02463 1.02115 0.83795 1.21234 0.93495 1.06969 1.01626 1.21985 1.01311 1.02347 0.91651 1.19894 0.89144 1.12637 0.97599 1.17632 0.82008 0.79775 0.84031 1.90790 1.66839 1.47720 1.41771 1.47945 1.04850 1.51763 1.28260 1.23031 0.94855 0.96249 0.90058 1.21893 0.97278 0.97910 0.98189 1.22520 0.88983 0.93654 0.92681 0.92313 1.87751 1.45244 1.36455 1.61651 1.23192 0.92080 0.96115 0.91242 1.21306 0.89225 0.94021 0.93292 1.44302 1.28792 1.11857 1.48081 1.19407 1.36630 0.87244 0.96105 0.90917 1.25864 1.01406 1.01829 0.95010 1.70154 1.50620 1.34103 1.03211 0.85346 0.78062 0.80286 0.76800 1.20814 1.21701 1.19549 1.21411 0.91783 0.93085 0.90847 0.98199 1.21273 0.93786 0.93756 0.89144 0.85479 0.87231 0.89916 0.85122 0.91217 0.78082 0.80971 0.80561 0.83624 0.88555 0.86501 0.92158 0.87251 0.93072 0.98727 0.90982 0.93916 0.92168 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 14.32 67.78 0.97 -1.42 16 2 C -0.19 -4.44 9.48 25.65 0.24 -4.19 16 3 C 0.13 2.97 5.81 85.63 0.50 3.47 16 4 N -0.41 -9.52 2.74 -515.05 -1.41 -10.93 16 5 C 0.02 0.38 11.37 83.48 0.95 1.32 16 6 C -0.21 -3.20 10.81 22.01 0.24 -2.96 16 7 C -0.15 -2.89 8.53 22.57 0.19 -2.70 16 8 C -0.08 -2.18 6.52 40.34 0.26 -1.92 16 9 C 0.57 20.49 7.48 86.44 0.65 21.14 16 10 O -0.59 -25.83 14.17 -4.33 -0.06 -25.90 16 11 N -0.60 -20.01 2.98 -823.36 -2.45 -22.47 16 12 C 0.08 1.82 5.29 86.44 0.46 2.27 16 13 C -0.11 -2.99 5.82 30.65 0.18 -2.82 16 14 C 0.08 2.91 2.47 30.66 0.08 2.98 16 15 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 16 O -0.39 -15.17 10.49 -148.98 -1.56 -16.73 16 17 C 0.05 2.01 6.96 72.05 0.50 2.51 16 18 C 0.15 7.38 5.41 86.28 0.47 7.85 16 19 N -0.61 -31.72 3.04 -673.97 -2.05 -33.77 16 20 C -0.26 -14.81 8.86 84.03 0.74 -14.07 16 21 H 0.07 3.96 6.29 -2.91 -0.02 3.94 16 22 C -0.05 -2.59 5.04 84.86 0.43 -2.16 16 23 N -0.94 -56.38 11.09 21.65 0.24 -56.14 16 24 Si 0.97 45.95 29.57 68.60 2.03 47.98 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.14 6.13 3.02 45.05 0.14 6.26 16 29 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 30 C 0.14 6.02 4.50 86.25 0.39 6.41 16 31 H 0.13 1.28 7.84 -2.91 -0.02 1.26 16 32 H 0.11 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.08 2.58 7.56 -2.91 -0.02 2.56 16 34 H 0.13 1.76 7.77 -2.39 -0.02 1.74 16 35 H 0.07 2.00 7.36 -2.39 -0.02 1.98 16 36 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.18 2.61 5.74 -2.91 -0.02 2.59 16 39 H 0.15 2.68 3.41 -2.38 -0.01 2.67 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 41 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 44 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 45 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.07 3.94 6.22 -2.39 -0.01 3.92 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.06 3.02 6.80 -2.38 -0.02 3.00 16 49 H 0.07 3.08 7.36 -2.39 -0.02 3.06 16 Total: -1.00 -77.92 381.07 3.06 -74.86 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.95 Total: 21.11 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 7.38 Total: 21.99 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.68 Total: -123.31 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.62 Total: -42.63 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.92 3.06 -74.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074268479.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.319 kcal (2) G-P(sol) polarization free energy of solvation -77.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds