Wall clock time and date at job start Wed Apr 1 2020 03:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00010 * 2 1 4 4 N 1.46504 * 109.47099 * 124.32941 * 3 2 1 5 5 C 1.35526 * 125.67686 * 257.34669 * 4 3 2 6 6 C 1.35460 * 108.87069 * 180.30401 * 5 4 3 7 7 C 1.39827 * 107.86196 * 359.73528 * 6 5 4 8 8 C 1.37650 * 125.67843 * 77.19690 * 4 3 2 9 9 C 1.46680 * 126.22996 * 359.95943 * 8 4 3 10 10 O 1.21686 * 120.00287 * 24.78256 * 9 8 4 11 11 N 1.34780 * 119.99714 * 204.77837 * 9 8 4 12 12 C 1.46842 * 120.41028 * 1.29760 * 11 9 8 13 13 C 1.53364 * 109.24350 * 127.71514 * 12 11 9 14 14 C 1.52781 * 108.81788 * 53.84186 * 13 12 11 15 15 H 1.09004 * 109.34055 * 57.14578 * 14 13 12 16 16 O 1.42600 * 111.12301 * 177.44795 * 14 13 12 17 17 C 1.43149 * 113.62515 * 183.64442 * 16 14 13 18 18 C 1.53188 * 109.73935 * 298.31230 * 17 16 14 19 19 N 1.47354 * 108.81091 * 51.20558 * 18 17 16 20 20 C 1.36936 * 121.30315 * 129.76312 * 19 18 17 21 21 H 1.08007 * 119.99791 * 209.82575 * 20 19 18 22 22 C 1.38811 * 120.00124 * 29.83338 * 20 19 18 23 23 N 1.31617 * 119.99754 * 217.43105 * 22 20 19 24 24 Si 1.86790 * 120.00105 * 37.43313 * 22 20 19 25 25 H 1.48503 * 109.47470 * 93.84646 * 24 22 20 26 26 H 1.48501 * 109.47413 * 213.84762 * 24 22 20 27 27 H 1.48502 * 109.47504 * 333.84649 * 24 22 20 28 28 C 1.46877 * 117.38849 * 309.76939 * 19 18 17 29 29 H 1.08993 * 110.21427 * 292.01354 * 28 19 18 30 30 C 1.47132 * 120.40957 * 181.26670 * 11 9 8 31 31 H 1.07995 * 120.00085 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99771 * 359.97438 * 1 2 3 33 33 H 1.08004 * 120.00463 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47380 * 4.32787 * 3 2 1 35 35 H 1.09005 * 109.47047 * 244.32951 * 3 2 1 36 36 H 1.08004 * 125.56920 * 0.02562 * 5 4 3 37 37 H 1.07994 * 126.06643 * 179.76793 * 6 5 4 38 38 H 1.08006 * 126.45843 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.50788 * 247.64777 * 12 11 9 40 40 H 1.09007 * 109.50846 * 7.78524 * 12 11 9 41 41 H 1.09001 * 109.58116 * 173.64034 * 13 12 11 42 42 H 1.08995 * 109.57992 * 294.04018 * 13 12 11 43 43 H 1.09003 * 109.42887 * 58.39569 * 17 16 14 44 44 H 1.09002 * 109.42501 * 178.22917 * 17 16 14 45 45 H 1.09008 * 109.58229 * 171.00003 * 18 17 16 46 46 H 1.09000 * 109.58625 * 291.27324 * 18 17 16 47 47 H 0.96997 * 119.99978 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.72145 * 113.59047 * 30 11 9 49 49 H 1.08998 * 109.72479 * 352.92110 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9822 1.3386 1.1407 5 6 2.7841 2.0197 2.2954 6 6 3.8473 1.8188 3.1105 7 6 4.7437 0.9760 2.4463 8 6 4.1890 0.6811 1.2190 9 6 4.7800 -0.1727 0.1830 10 8 4.4706 -0.0167 -0.9835 11 7 5.6657 -1.1299 0.5231 12 6 6.0241 -1.3448 1.9308 13 6 5.8403 -2.8271 2.2787 14 6 6.6299 -3.6696 1.2782 15 1 7.6773 -3.3685 1.2999 16 8 6.5406 -5.0578 1.5920 17 6 7.3293 -5.8913 0.7362 18 6 6.8420 -5.7563 -0.7098 19 7 6.7753 -4.3258 -1.0570 20 6 7.3540 -3.8435 -2.2005 21 1 7.7269 -2.8303 -2.2311 22 6 7.4614 -4.6567 -3.3204 23 7 8.5323 -4.5890 -4.0825 24 14 6.0861 -5.8469 -3.7456 25 1 5.1558 -5.2049 -4.7088 26 1 6.6625 -7.0719 -4.3559 27 1 5.3463 -6.2105 -2.5104 28 6 6.0637 -3.4376 -0.1285 29 1 4.9971 -3.6614 -0.1361 30 6 6.2851 -1.9730 -0.5115 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3577 2.1322 0.0775 35 1 2.6307 1.3972 -0.9263 36 1 1.9217 2.6275 2.5263 37 1 3.9788 2.2353 4.0982 38 1 5.6918 0.6222 2.8237 39 1 7.0642 -1.0599 2.0892 40 1 5.3791 -0.7388 2.5672 41 1 6.2107 -3.0145 3.2865 42 1 4.7834 -3.0873 2.2216 43 1 8.3743 -5.5871 0.7966 44 1 7.2358 -6.9295 1.0549 45 1 7.5382 -6.2624 -1.3787 46 1 5.8528 -6.2039 -0.8053 47 1 8.6072 -5.1570 -4.8652 48 1 7.3535 -1.7642 -0.5652 49 1 5.8212 -1.7711 -1.4769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074268480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:13 Heat of formation + Delta-G solvation = 55.752001 kcal Electronic energy + Delta-G solvation = -31933.278152 eV Core-core repulsion = 27864.160438 eV Total energy + Delta-G solvation = -4069.117713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.64477 -39.83054 -38.40977 -36.29088 -35.33380 -34.84248 -32.18894 -31.66660 -31.41728 -30.52695 -29.16904 -27.24841 -26.31843 -25.32888 -24.05484 -22.73276 -21.83465 -21.05475 -20.82605 -20.31814 -19.78526 -18.99781 -17.27834 -16.87363 -16.42691 -15.77232 -15.58286 -15.53817 -15.40377 -15.11725 -14.57494 -14.30676 -14.20721 -14.01475 -13.85656 -13.76303 -13.28774 -13.27823 -12.94396 -12.88877 -12.53114 -12.44435 -12.33195 -12.08437 -12.02568 -11.61491 -11.48104 -11.20585 -11.10567 -10.76111 -10.58031 -10.51090 -10.23411 -9.92181 -9.82106 -9.67561 -9.48729 -9.26849 -8.82586 -8.50759 -8.34170 -8.20666 -6.99976 -6.12965 -3.34476 1.50119 1.79137 2.62890 2.67804 3.31275 3.37217 3.39108 3.49590 3.55846 4.13548 4.43749 4.51813 4.56307 4.62682 4.71963 4.87708 5.01918 5.05453 5.12815 5.24513 5.27120 5.29093 5.35498 5.39949 5.54002 5.60440 5.65286 5.67429 5.76856 5.86020 5.92797 5.94186 6.01098 6.03740 6.07932 6.17712 6.27463 6.29548 6.34895 6.49562 6.55661 6.59026 6.68086 6.76616 6.88394 6.88999 7.10869 7.56673 7.69179 7.84075 8.21785 8.32813 8.83240 9.63649 10.06083 11.01137 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003696 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.061666 B = 7573.933869 C = 8528.015770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.165 4.165 3 C 0.126 3.874 4 N -0.405 5.405 5 C 0.010 3.990 6 C -0.207 4.207 7 C -0.160 4.160 8 C -0.035 4.035 9 C 0.584 3.416 10 O -0.543 6.543 11 N -0.596 5.596 12 C 0.077 3.923 13 C -0.122 4.122 14 C 0.076 3.924 15 H 0.057 0.943 16 O -0.387 6.387 17 C 0.046 3.954 18 C 0.110 3.890 19 N -0.594 5.594 20 C -0.281 4.281 21 H 0.086 0.914 22 C 0.049 3.951 23 N -0.874 5.874 24 Si 0.833 3.167 25 H -0.290 1.290 26 H -0.294 1.294 27 H -0.257 1.257 28 C 0.137 3.863 29 H 0.038 0.962 30 C 0.127 3.873 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.158 0.842 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.035 0.965 47 H 0.264 0.736 48 H 0.079 0.921 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.702 10.501 16.150 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C 0.006 3.994 4 N -0.078 5.078 5 C -0.125 4.125 6 C -0.231 4.231 7 C -0.186 4.186 8 C -0.149 4.149 9 C 0.372 3.628 10 O -0.422 6.422 11 N -0.328 5.328 12 C -0.045 4.045 13 C -0.161 4.161 14 C 0.017 3.983 15 H 0.075 0.925 16 O -0.306 6.306 17 C -0.032 4.032 18 C -0.015 4.015 19 N -0.319 5.319 20 C -0.408 4.408 21 H 0.104 0.896 22 C -0.154 4.154 23 N -0.513 5.513 24 Si 0.659 3.341 25 H -0.217 1.217 26 H -0.221 1.221 27 H -0.181 1.181 28 C 0.029 3.971 29 H 0.055 0.945 30 C 0.005 3.995 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.182 0.818 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.061 10.454 15.152 21.476 hybrid contribution -0.625 -0.823 -0.727 1.264 sum -11.686 9.630 14.425 20.914 Atomic orbital electron populations 1.23880 0.95428 1.02302 0.99474 1.23111 0.96158 0.98447 1.00640 1.21162 0.92124 0.96751 0.89412 1.43972 1.14835 1.35398 1.13573 1.21970 1.01835 1.02112 0.86567 1.20819 0.95739 1.05444 1.01062 1.21670 1.01409 1.02326 0.93155 1.20151 0.90686 1.05988 0.98099 1.17024 0.78927 0.79849 0.86978 1.90811 1.61843 1.70232 1.19316 1.47923 1.42852 1.33842 1.08194 1.22696 1.02174 0.96937 0.82697 1.21851 1.01453 0.93556 0.99253 1.22482 0.98820 0.82084 0.94964 0.92470 1.87759 1.69987 1.16827 1.56005 1.23128 0.94435 0.93716 0.91903 1.21976 0.99404 0.86259 0.93908 1.44303 1.62354 1.02552 1.22736 1.18667 1.32701 1.01192 0.88259 0.89645 1.25260 0.96625 0.97257 0.96208 1.70109 1.24152 1.39660 1.17369 0.87601 0.86205 0.80674 0.79608 1.21733 1.22092 1.18147 1.21340 0.95216 0.90564 0.89950 0.94459 1.21791 0.98286 0.88102 0.91285 0.87759 0.88323 0.86688 0.88742 0.86796 0.81752 0.84068 0.82483 0.90977 0.86161 0.90064 0.90999 0.93180 0.89768 0.90502 0.94738 0.92629 0.90294 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 14.32 29.02 0.42 -1.13 16 2 C -0.16 -1.87 9.80 -36.02 -0.35 -2.22 16 3 C 0.13 1.37 5.99 -5.19 -0.03 1.34 16 4 N -0.41 -4.81 2.76 -114.15 -0.32 -5.13 16 5 C 0.01 0.09 11.35 -16.91 -0.19 -0.10 16 6 C -0.21 -1.99 10.81 -39.98 -0.43 -2.42 16 7 C -0.16 -1.79 8.54 -39.12 -0.33 -2.12 16 8 C -0.04 -0.48 6.48 -81.98 -0.53 -1.01 16 9 C 0.58 9.76 7.55 -12.85 -0.10 9.66 16 10 O -0.54 -10.81 14.62 5.20 0.08 -10.73 16 11 N -0.60 -9.52 2.98 -174.23 -0.52 -10.04 16 12 C 0.08 0.95 5.27 -3.67 -0.02 0.93 16 13 C -0.12 -1.64 5.82 -26.65 -0.16 -1.80 16 14 C 0.08 1.32 2.48 -26.63 -0.07 1.25 16 15 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 16 O -0.39 -7.14 10.49 -35.23 -0.37 -7.51 16 17 C 0.05 0.84 6.95 37.25 0.26 1.10 16 18 C 0.11 2.39 4.66 -3.48 -0.02 2.37 16 19 N -0.59 -14.00 2.72 -164.35 -0.45 -14.44 16 20 C -0.28 -7.59 9.04 -15.06 -0.14 -7.73 16 21 H 0.09 2.42 6.52 -52.48 -0.34 2.08 16 22 C 0.05 1.38 4.79 -17.43 -0.08 1.30 16 23 N -0.87 -25.87 13.97 55.49 0.78 -25.10 16 24 Si 0.83 21.22 26.83 -169.99 -4.56 16.66 16 25 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.26 -6.32 5.02 56.52 0.28 -6.03 16 28 C 0.14 2.78 3.03 -67.52 -0.20 2.57 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 C 0.13 2.46 4.51 -3.70 -0.02 2.44 16 31 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.10 0.67 7.84 -52.48 -0.41 0.26 16 33 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.09 0.72 7.74 -51.93 -0.40 0.31 16 35 H 0.11 1.47 6.82 -51.93 -0.35 1.12 16 36 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.16 1.45 5.73 -52.48 -0.30 1.15 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.12 1.26 3.44 -51.93 -0.18 1.08 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.75 6.39 -51.92 -0.33 1.42 16 46 H 0.03 0.77 6.51 -51.93 -0.34 0.44 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.08 1.57 7.36 -51.93 -0.38 1.19 16 49 H 0.10 2.34 6.81 -51.93 -0.35 1.98 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -32.83 377.66 -8.96 -41.79 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.30 Total: 4.38 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.99 Total: 4.43 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.51 Total: -54.71 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.29 Total: -18.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.56 Total: 16.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.83 -8.96 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074268480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.546 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds