Wall clock time and date at job start Wed Apr 1 2020 03:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50704 * 120.00010 * 2 1 4 4 N 1.46504 * 109.47099 * 124.32941 * 3 2 1 5 5 C 1.35526 * 125.67686 * 257.34669 * 4 3 2 6 6 C 1.35460 * 108.87069 * 180.30401 * 5 4 3 7 7 C 1.39827 * 107.86196 * 359.73528 * 6 5 4 8 8 C 1.37650 * 125.67843 * 77.19690 * 4 3 2 9 9 C 1.46680 * 126.22996 * 359.95943 * 8 4 3 10 10 O 1.21686 * 120.00287 * 24.78256 * 9 8 4 11 11 N 1.34780 * 119.99714 * 204.77837 * 9 8 4 12 12 C 1.46842 * 120.41028 * 1.29760 * 11 9 8 13 13 C 1.53364 * 109.24350 * 127.71514 * 12 11 9 14 14 C 1.52781 * 108.81788 * 53.84186 * 13 12 11 15 15 H 1.09004 * 109.34055 * 57.14578 * 14 13 12 16 16 O 1.42600 * 111.12301 * 177.44795 * 14 13 12 17 17 C 1.43149 * 113.62515 * 183.64442 * 16 14 13 18 18 C 1.53188 * 109.73935 * 298.31230 * 17 16 14 19 19 N 1.47354 * 108.81091 * 51.20558 * 18 17 16 20 20 C 1.36936 * 121.30315 * 129.76312 * 19 18 17 21 21 H 1.08007 * 119.99791 * 209.82575 * 20 19 18 22 22 C 1.38811 * 120.00124 * 29.83338 * 20 19 18 23 23 N 1.31617 * 119.99754 * 217.43105 * 22 20 19 24 24 Si 1.86790 * 120.00105 * 37.43313 * 22 20 19 25 25 H 1.48503 * 109.47470 * 93.84646 * 24 22 20 26 26 H 1.48501 * 109.47413 * 213.84762 * 24 22 20 27 27 H 1.48502 * 109.47504 * 333.84649 * 24 22 20 28 28 C 1.46877 * 117.38849 * 309.76939 * 19 18 17 29 29 H 1.08993 * 110.21427 * 292.01354 * 28 19 18 30 30 C 1.47132 * 120.40957 * 181.26670 * 11 9 8 31 31 H 1.07995 * 120.00085 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99771 * 359.97438 * 1 2 3 33 33 H 1.08004 * 120.00463 * 179.97438 * 2 1 3 34 34 H 1.08998 * 109.47380 * 4.32787 * 3 2 1 35 35 H 1.09005 * 109.47047 * 244.32951 * 3 2 1 36 36 H 1.08004 * 125.56920 * 0.02562 * 5 4 3 37 37 H 1.07994 * 126.06643 * 179.76793 * 6 5 4 38 38 H 1.08006 * 126.45843 * 180.02562 * 7 6 5 39 39 H 1.08995 * 109.50788 * 247.64777 * 12 11 9 40 40 H 1.09007 * 109.50846 * 7.78524 * 12 11 9 41 41 H 1.09001 * 109.58116 * 173.64034 * 13 12 11 42 42 H 1.08995 * 109.57992 * 294.04018 * 13 12 11 43 43 H 1.09003 * 109.42887 * 58.39569 * 17 16 14 44 44 H 1.09002 * 109.42501 * 178.22917 * 17 16 14 45 45 H 1.09008 * 109.58229 * 171.00003 * 18 17 16 46 46 H 1.09000 * 109.58625 * 291.27324 * 18 17 16 47 47 H 0.96997 * 119.99978 * 180.02562 * 23 22 20 48 48 H 1.08998 * 109.72145 * 113.59047 * 30 11 9 49 49 H 1.08998 * 109.72479 * 352.92110 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9822 1.3386 1.1407 5 6 2.7841 2.0197 2.2954 6 6 3.8473 1.8188 3.1105 7 6 4.7437 0.9760 2.4463 8 6 4.1890 0.6811 1.2190 9 6 4.7800 -0.1727 0.1830 10 8 4.4706 -0.0167 -0.9835 11 7 5.6657 -1.1299 0.5231 12 6 6.0241 -1.3448 1.9308 13 6 5.8403 -2.8271 2.2787 14 6 6.6299 -3.6696 1.2782 15 1 7.6773 -3.3685 1.2999 16 8 6.5406 -5.0578 1.5920 17 6 7.3293 -5.8913 0.7362 18 6 6.8420 -5.7563 -0.7098 19 7 6.7753 -4.3258 -1.0570 20 6 7.3540 -3.8435 -2.2005 21 1 7.7269 -2.8303 -2.2311 22 6 7.4614 -4.6567 -3.3204 23 7 8.5323 -4.5890 -4.0825 24 14 6.0861 -5.8469 -3.7456 25 1 5.1558 -5.2049 -4.7088 26 1 6.6625 -7.0719 -4.3559 27 1 5.3463 -6.2105 -2.5104 28 6 6.0637 -3.4376 -0.1285 29 1 4.9971 -3.6614 -0.1361 30 6 6.2851 -1.9730 -0.5115 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9354 0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3577 2.1322 0.0775 35 1 2.6307 1.3972 -0.9263 36 1 1.9217 2.6275 2.5263 37 1 3.9788 2.2353 4.0982 38 1 5.6918 0.6222 2.8237 39 1 7.0642 -1.0599 2.0892 40 1 5.3791 -0.7388 2.5672 41 1 6.2107 -3.0145 3.2865 42 1 4.7834 -3.0873 2.2216 43 1 8.3743 -5.5871 0.7966 44 1 7.2358 -6.9295 1.0549 45 1 7.5382 -6.2624 -1.3787 46 1 5.8528 -6.2039 -0.8053 47 1 8.6072 -5.1570 -4.8652 48 1 7.3535 -1.7642 -0.5652 49 1 5.8212 -1.7711 -1.4769 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074268480.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:11 Heat of formation + Delta-G solvation = 34.342827 kcal Electronic energy + Delta-G solvation = -31934.206523 eV Core-core repulsion = 27864.160438 eV Total energy + Delta-G solvation = -4070.046085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.56700 -41.19074 -39.80275 -37.59907 -36.66556 -36.16546 -33.87392 -33.31705 -32.37786 -31.80971 -30.30904 -28.94550 -27.17448 -26.72537 -25.62944 -24.14721 -23.28892 -22.26286 -21.84950 -21.37358 -21.10922 -20.00712 -18.82907 -18.28124 -17.74143 -17.25168 -17.03019 -16.83601 -16.66570 -16.22225 -16.09897 -15.84637 -15.63314 -15.23439 -15.09592 -14.95485 -14.66263 -14.49557 -14.25494 -14.14818 -13.88774 -13.79426 -13.63165 -13.44178 -13.07329 -12.91613 -12.80930 -12.61462 -12.47518 -12.39047 -12.27201 -12.05115 -11.80372 -11.50944 -11.29027 -11.06281 -11.00969 -10.58697 -10.40465 -9.82605 -9.62876 -9.10257 -8.96551 -8.32629 -5.50191 0.51885 1.00341 1.26550 1.37651 1.45117 1.59230 1.87747 2.25412 2.29842 2.38391 2.73015 2.87639 3.22631 3.48609 3.68645 3.76861 3.84476 3.90601 3.99254 4.10160 4.19696 4.22095 4.24512 4.29877 4.32156 4.41866 4.48055 4.51631 4.55229 4.57471 4.65869 4.68300 4.80814 4.85655 4.89417 4.91112 5.01283 5.03637 5.17598 5.25836 5.30162 5.38725 5.46767 5.58659 5.76421 5.88433 6.02312 6.06252 6.22105 6.31743 6.40087 6.79124 7.05943 7.51549 7.97851 8.85370 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012718 B = 0.003696 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.061666 B = 7573.933869 C = 8528.015770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.196 4.196 3 C 0.129 3.871 4 N -0.413 5.413 5 C 0.025 3.975 6 C -0.211 4.211 7 C -0.147 4.147 8 C -0.081 4.081 9 C 0.577 3.423 10 O -0.592 6.592 11 N -0.597 5.597 12 C 0.077 3.923 13 C -0.113 4.113 14 C 0.082 3.918 15 H 0.057 0.943 16 O -0.386 6.386 17 C 0.055 3.945 18 C 0.104 3.896 19 N -0.608 5.608 20 C -0.267 4.267 21 H 0.060 0.940 22 C 0.002 3.998 23 N -0.917 5.917 24 Si 0.887 3.113 25 H -0.305 1.305 26 H -0.289 1.289 27 H -0.244 1.244 28 C 0.135 3.865 29 H 0.019 0.981 30 C 0.142 3.858 31 H 0.108 0.892 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.204 0.796 37 H 0.173 0.827 38 H 0.177 0.823 39 H 0.094 0.906 40 H 0.147 0.853 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.121 0.879 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.265 0.735 48 H 0.068 0.932 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 11.553 20.532 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.215 4.215 3 C 0.009 3.991 4 N -0.086 5.086 5 C -0.110 4.110 6 C -0.234 4.234 7 C -0.173 4.173 8 C -0.194 4.194 9 C 0.368 3.632 10 O -0.475 6.475 11 N -0.329 5.329 12 C -0.044 4.044 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.075 0.925 16 O -0.305 6.305 17 C -0.023 4.023 18 C -0.021 4.021 19 N -0.334 5.334 20 C -0.395 4.395 21 H 0.077 0.923 22 C -0.197 4.197 23 N -0.559 5.559 24 Si 0.714 3.286 25 H -0.233 1.233 26 H -0.215 1.215 27 H -0.168 1.168 28 C 0.028 3.972 29 H 0.036 0.964 30 C 0.019 3.981 31 H 0.126 0.874 32 H 0.149 0.851 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.098 0.902 36 H 0.221 0.779 37 H 0.190 0.810 38 H 0.193 0.807 39 H 0.112 0.888 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.138 0.862 45 H 0.081 0.919 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.932 11.482 19.603 26.141 hybrid contribution -0.136 -1.035 -2.033 2.285 sum -13.068 10.446 17.570 24.261 Atomic orbital electron populations 1.24136 0.94350 1.03982 0.95687 1.22908 0.97026 0.97285 1.04258 1.21142 0.92127 0.97729 0.88129 1.44167 1.14436 1.35511 1.14528 1.22741 1.02761 1.00424 0.85095 1.21229 0.95011 1.04905 1.02235 1.21989 1.01993 1.01482 0.91819 1.19849 0.92749 1.08274 0.98484 1.17619 0.78396 0.79896 0.87257 1.90773 1.63366 1.71728 1.21618 1.47945 1.42684 1.33208 1.09014 1.23035 1.04031 0.96787 0.80497 1.21876 1.00434 0.93032 0.99786 1.22508 0.99216 0.82389 0.93644 0.92483 1.87776 1.70034 1.17139 1.55560 1.23088 0.94217 0.95759 0.89249 1.22059 0.98905 0.84732 0.96424 1.44476 1.62670 1.03983 1.22245 1.18612 1.31282 1.00035 0.89567 0.92280 1.25686 0.97985 0.99481 0.96534 1.70164 1.25645 1.41737 1.18399 0.86725 0.83512 0.79023 0.79335 1.23346 1.21496 1.16837 1.21475 0.93976 0.90228 0.91509 0.96354 1.21272 0.97286 0.88603 0.90929 0.87383 0.85129 0.90733 0.84822 0.90208 0.77948 0.80984 0.80651 0.88819 0.83646 0.86416 0.91713 0.92958 0.86157 0.91879 0.95231 0.92617 0.91380 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 14.32 67.79 0.97 -1.34 16 2 C -0.20 -4.51 9.80 25.65 0.25 -4.26 16 3 C 0.13 2.77 5.99 85.63 0.51 3.28 16 4 N -0.41 -9.29 2.76 -515.05 -1.42 -10.71 16 5 C 0.02 0.37 11.35 83.48 0.95 1.32 16 6 C -0.21 -3.13 10.81 22.01 0.24 -2.90 16 7 C -0.15 -2.86 8.54 22.57 0.19 -2.66 16 8 C -0.08 -2.18 6.48 40.35 0.26 -1.92 16 9 C 0.58 20.41 7.55 86.45 0.65 21.06 16 10 O -0.59 -25.98 14.62 -4.30 -0.06 -26.04 16 11 N -0.60 -19.77 2.98 -823.36 -2.45 -22.22 16 12 C 0.08 1.74 5.27 86.44 0.46 2.19 16 13 C -0.11 -2.75 5.82 30.64 0.18 -2.57 16 14 C 0.08 2.74 2.48 30.66 0.08 2.81 16 15 H 0.06 1.95 8.13 -2.38 -0.02 1.93 16 16 O -0.39 -13.40 10.49 -148.98 -1.56 -14.97 16 17 C 0.05 1.88 6.95 72.04 0.50 2.38 16 18 C 0.10 4.50 4.66 86.28 0.40 4.90 16 19 N -0.61 -29.57 2.72 -673.89 -1.83 -31.40 16 20 C -0.27 -15.13 9.04 84.03 0.76 -14.38 16 21 H 0.06 3.62 6.52 -2.91 -0.02 3.60 16 22 C 0.00 0.14 4.79 84.86 0.41 0.54 16 23 N -0.92 -56.66 13.97 21.65 0.30 -56.35 16 24 Si 0.89 45.65 26.83 68.60 1.84 47.50 16 25 H -0.30 -16.34 7.11 99.48 0.71 -15.63 16 26 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.24 -11.93 5.02 99.48 0.50 -11.43 16 28 C 0.13 5.67 3.03 45.05 0.14 5.81 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 C 0.14 5.92 4.51 86.25 0.39 6.31 16 31 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.13 1.27 7.84 -2.91 -0.02 1.25 16 33 H 0.07 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.13 1.67 7.74 -2.39 -0.02 1.65 16 35 H 0.08 2.24 6.82 -2.38 -0.02 2.23 16 36 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.18 2.59 5.73 -2.91 -0.02 2.57 16 39 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.15 2.61 3.44 -2.38 -0.01 2.60 16 41 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.06 2.90 6.39 -2.38 -0.02 2.88 16 46 H 0.03 1.32 6.51 -2.39 -0.02 1.30 16 47 H 0.26 15.52 8.31 -92.71 -0.77 14.74 16 48 H 0.07 2.93 7.36 -2.39 -0.02 2.91 16 49 H 0.06 3.06 6.81 -2.39 -0.02 3.05 16 Total: -1.00 -78.48 377.66 2.89 -75.59 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.75 Total: 18.01 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 7.33 Total: 20.59 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.41 Total: -120.69 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.63 Total: -41.00 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.84 Total: 47.50 kcal Total: -78.48 2.89 -75.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074268480.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.936 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds