Wall clock time and date at job start Wed Apr 1 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50690 * 120.00158 * 2 1 4 4 N 1.46901 * 109.47271 * 124.99893 * 3 2 1 5 5 C 1.46848 * 110.99966 * 294.21075 * 4 3 2 6 6 C 1.53041 * 109.52348 * 174.16054 * 5 4 3 7 7 C 1.53127 * 109.27544 * 59.17976 * 6 5 4 8 8 N 1.46505 * 109.56901 * 182.41067 * 7 6 5 9 9 C 1.34783 * 119.99718 * 274.71103 * 8 7 6 10 10 O 1.21584 * 120.00186 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99557 * 180.02562 * 9 8 7 12 12 C 1.40030 * 119.99920 * 174.74796 * 11 9 8 13 13 C 1.38908 * 119.99741 * 326.15555 * 12 11 9 14 14 C 1.38007 * 119.99800 * 179.81530 * 13 12 11 15 15 C 1.38906 * 120.00005 * 0.43460 * 14 13 12 16 16 O 1.35783 * 119.99821 * 179.76377 * 15 14 13 17 17 C 1.34815 * 116.99944 * 185.93751 * 16 15 14 18 18 H 1.07999 * 120.00139 * 5.41809 * 17 16 15 19 19 C 1.38624 * 119.99875 * 185.41157 * 17 16 15 20 20 N 1.31581 * 120.00221 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46918 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47065 * 120.00295 * 21 19 17 24 24 H 1.48497 * 109.47515 * 240.00074 * 21 19 17 25 25 C 1.38894 * 120.00102 * 359.79835 * 15 14 13 26 26 C 1.38009 * 120.00468 * 359.97438 * 25 15 14 27 27 C 1.53118 * 109.16173 * 302.34297 * 7 6 5 28 28 C 1.46847 * 110.99895 * 170.00339 * 4 3 2 29 29 H 1.08000 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00150 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99987 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47356 * 245.00191 * 3 2 1 33 33 H 1.09001 * 109.47171 * 5.00248 * 3 2 1 34 34 H 1.09005 * 109.46414 * 294.17667 * 5 4 3 35 35 H 1.08999 * 109.46422 * 54.14607 * 5 4 3 36 36 H 1.08992 * 109.50398 * 299.23904 * 6 5 4 37 37 H 1.09001 * 109.50450 * 179.12031 * 6 5 4 38 38 H 1.08999 * 109.52231 * 62.25626 * 7 6 5 39 39 H 0.96993 * 120.00032 * 94.71736 * 8 7 6 40 40 H 0.96999 * 120.00012 * 354.74383 * 11 9 8 41 41 H 1.08002 * 120.00545 * 359.97438 * 13 12 11 42 42 H 1.08007 * 120.00178 * 180.18620 * 14 13 12 43 43 H 0.96994 * 119.99861 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.00167 * 179.97438 * 25 15 14 45 45 H 1.08000 * 120.00394 * 179.97438 * 26 25 15 46 46 H 1.08996 * 109.50492 * 297.72108 * 27 7 6 47 47 H 1.08996 * 109.53158 * 177.61722 * 27 7 6 48 48 H 1.09006 * 109.46335 * 305.85234 * 28 4 3 49 49 H 1.08998 * 109.46746 * 65.83330 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2715 1.3409 2.4116 6 6 3.2686 1.2220 3.5665 7 6 4.2519 2.3944 3.5080 8 7 5.2447 2.2560 4.5764 9 6 4.9741 2.7215 5.8121 10 8 3.9060 3.2557 6.0401 11 7 5.8876 2.5946 6.7949 12 6 5.6531 3.1742 8.0478 13 6 4.9568 4.3728 8.1392 14 6 4.7224 4.9421 9.3743 15 6 5.1904 4.3213 10.5254 16 8 4.9639 4.8839 11.7402 17 6 5.5484 4.2982 12.8046 18 1 6.2335 3.4759 12.6599 19 6 5.2701 4.7514 14.0847 20 7 4.4351 5.7530 14.2611 21 14 6.0805 3.9403 15.5595 22 1 6.9709 2.8463 15.0954 23 1 6.8803 4.9480 16.3011 24 1 5.0350 3.3824 16.4542 25 6 5.8908 3.1253 10.4336 26 6 6.1213 2.5535 9.1989 27 6 4.9584 2.3905 2.1495 28 6 3.9122 2.4755 1.0358 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 2.6212 1.4025 -0.9314 33 1 1.3586 2.1316 0.0896 34 1 1.7149 2.2733 2.5069 35 1 1.5787 0.4999 2.4420 36 1 3.8158 0.2834 3.4796 37 1 2.7316 1.2444 4.5148 38 1 3.7095 3.3314 3.6339 39 1 6.0966 1.8296 4.3946 40 1 6.7075 2.1018 6.6343 41 1 4.5967 4.8578 7.2439 42 1 4.1784 5.8724 9.4456 43 1 4.2407 6.0703 15.1568 44 1 6.2551 2.6428 11.3286 45 1 6.6662 1.6238 9.1276 46 1 5.5321 1.4702 2.0403 47 1 5.6290 3.2473 2.0850 48 1 4.4111 2.4585 0.0668 49 1 3.3480 3.4025 1.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251689788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:34 Heat of formation + Delta-G solvation = 0.039607 kcal Electronic energy + Delta-G solvation = -28950.938391 eV Core-core repulsion = 24879.404807 eV Total energy + Delta-G solvation = -4071.533584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.52032 -39.43300 -38.62557 -36.76368 -35.72643 -34.02821 -33.71631 -32.16018 -31.24388 -31.02304 -30.17012 -27.79593 -26.22839 -25.25941 -23.59038 -23.22006 -22.21373 -21.47703 -20.54411 -20.23622 -20.07217 -18.42762 -17.76179 -17.41179 -16.81733 -16.30779 -15.80110 -15.50030 -15.18958 -14.82293 -14.73721 -14.52959 -14.41807 -14.06376 -13.94811 -13.63319 -13.50421 -13.33348 -13.21018 -12.77092 -12.70947 -12.49408 -12.19185 -11.81441 -11.76329 -11.60162 -11.54915 -11.51335 -11.39661 -11.08952 -11.00263 -10.82630 -10.63506 -10.41621 -9.94726 -9.82517 -9.62639 -9.21705 -9.11982 -8.75383 -8.66787 -8.15847 -6.85765 -6.41047 -3.98995 1.82812 2.20427 2.27236 2.72354 3.13506 3.15667 3.21291 3.37236 3.53487 3.99568 4.22233 4.35946 4.48297 4.57585 4.62841 4.66372 4.77562 4.90163 5.00061 5.09003 5.14113 5.17649 5.21474 5.28533 5.32526 5.36335 5.47006 5.54032 5.59224 5.60780 5.71527 5.79739 5.85148 6.02680 6.18373 6.20072 6.23356 6.25685 6.30267 6.43587 6.66437 6.69927 6.75143 6.86468 6.96411 7.17369 7.26213 7.30438 7.47259 7.84258 8.03470 8.09407 8.72172 9.04547 9.76048 10.77218 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027283 B = 0.001629 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.044624 B =17183.888240 C =17487.524817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.080 3.920 4 N -0.537 5.537 5 C 0.059 3.941 6 C -0.128 4.128 7 C 0.164 3.836 8 N -0.744 5.744 9 C 0.699 3.301 10 O -0.575 6.575 11 N -0.676 5.676 12 C 0.058 3.942 13 C -0.068 4.068 14 C -0.176 4.176 15 C 0.145 3.855 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.218 4.218 26 C -0.094 4.094 27 C -0.123 4.123 28 C 0.059 3.941 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.394 0.606 40 H 0.397 0.603 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.269 0.731 44 H 0.131 0.869 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -10.787 -28.410 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.163 4.163 3 C -0.048 4.048 4 N -0.262 5.262 5 C -0.069 4.069 6 C -0.167 4.167 7 C 0.059 3.941 8 N -0.399 5.399 9 C 0.400 3.600 10 O -0.451 6.451 11 N -0.323 5.323 12 C -0.035 4.035 13 C -0.088 4.088 14 C -0.196 4.196 15 C 0.091 3.909 16 O -0.082 6.082 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.237 4.237 26 C -0.114 4.114 27 C -0.161 4.161 28 C -0.069 4.069 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.227 0.773 40 H 0.231 0.769 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.079 0.921 44 H 0.149 0.851 45 H 0.128 0.872 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.073 -10.352 -27.965 29.820 hybrid contribution 0.706 -0.342 0.626 1.003 sum 0.633 -10.694 -27.340 29.363 Atomic orbital electron populations 1.23902 0.95959 1.01986 1.01126 1.22866 0.95491 0.98574 0.99320 1.21225 0.94277 0.94927 0.94335 1.61960 1.19433 1.42662 1.02099 1.22066 0.95579 1.01056 0.88213 1.22015 0.97460 0.99013 0.98180 1.20812 0.88995 0.99386 0.84915 1.45164 1.20428 1.65473 1.08880 1.15969 0.83937 0.79666 0.80435 1.90944 1.23813 1.48923 1.81456 1.42347 1.21493 1.57688 1.10795 1.17022 1.08510 0.95327 0.82643 1.20613 0.97910 0.93207 0.97054 1.20123 1.07327 1.02317 0.89867 1.19408 0.93051 0.91238 0.87221 1.84007 1.63650 1.49359 1.11197 1.21345 1.24486 1.17661 0.83143 0.89096 1.25283 0.96823 0.96541 0.97974 1.70060 1.32615 1.24228 1.22890 0.85654 0.78707 0.78830 0.80255 1.19146 1.20203 1.20203 1.20959 1.07147 0.98319 0.97319 1.20440 1.01542 0.98444 0.91000 1.21861 0.98039 1.03166 0.93038 1.22021 0.94195 0.91616 0.99064 0.88737 0.88244 0.86805 0.89890 0.94313 0.94560 0.90240 0.91009 0.90582 0.89623 0.77273 0.76911 0.85770 0.86187 0.92127 0.85143 0.87242 0.90449 0.90672 0.90189 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 14.32 29.02 0.42 -0.72 16 2 C -0.14 -0.91 8.52 -36.03 -0.31 -1.22 16 3 C 0.08 0.51 5.41 -4.98 -0.03 0.48 16 4 N -0.54 -3.95 4.65 -236.11 -1.10 -5.05 16 5 C 0.06 0.50 5.31 -3.83 -0.02 0.48 16 6 C -0.13 -1.22 5.68 -26.64 -0.15 -1.37 16 7 C 0.16 1.54 2.52 -67.80 -0.17 1.37 16 8 N -0.74 -7.35 5.09 -58.55 -0.30 -7.65 16 9 C 0.70 10.14 8.27 -86.92 -0.72 9.42 16 10 O -0.57 -10.86 13.72 5.29 0.07 -10.79 16 11 N -0.68 -9.39 5.35 -14.18 -0.08 -9.47 16 12 C 0.06 1.05 6.27 -83.61 -0.52 0.53 16 13 C -0.07 -1.37 8.64 -39.42 -0.34 -1.71 16 14 C -0.18 -3.97 9.98 -39.42 -0.39 -4.36 16 15 C 0.14 3.57 6.65 -39.09 -0.26 3.31 16 16 O -0.18 -5.17 9.76 -0.01 0.00 -5.17 16 17 C -0.39 -10.96 9.44 30.87 0.29 -10.67 16 18 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 20 N -0.86 -25.58 13.67 55.48 0.76 -24.82 16 21 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 C -0.22 -4.74 9.12 -39.42 -0.36 -5.10 16 26 C -0.09 -1.71 9.96 -39.42 -0.39 -2.10 16 27 C -0.12 -0.81 5.57 -26.65 -0.15 -0.95 16 28 C 0.06 0.38 5.46 -3.83 -0.02 0.36 16 29 H 0.09 0.53 7.84 -52.49 -0.41 0.12 16 30 H 0.10 0.51 8.06 -52.48 -0.42 0.08 16 31 H 0.11 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.08 0.45 7.99 -51.93 -0.41 0.03 16 33 H 0.04 0.25 7.77 -51.93 -0.40 -0.15 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.68 7.10 -51.93 -0.37 0.31 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 39 H 0.39 2.68 8.62 -40.82 -0.35 2.33 16 40 H 0.40 3.97 8.83 -40.82 -0.36 3.61 16 41 H 0.12 2.47 6.45 -52.49 -0.34 2.13 16 42 H 0.12 2.62 8.06 -52.48 -0.42 2.19 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.81 5.71 -52.48 -0.30 2.51 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.41 8.02 -51.93 -0.42 0.00 16 49 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -33.78 400.31 -10.26 -44.03 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.40 Total: 8.58 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.22 Total: -11.30 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.71 Total: -46.99 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.78 -10.26 -44.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251689788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.074 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds