Wall clock time and date at job start Wed Apr 1 2020 03:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50690 * 120.00158 * 2 1 4 4 N 1.46901 * 109.47271 * 124.99893 * 3 2 1 5 5 C 1.46848 * 110.99966 * 294.21075 * 4 3 2 6 6 C 1.53041 * 109.52348 * 174.16054 * 5 4 3 7 7 C 1.53127 * 109.27544 * 59.17976 * 6 5 4 8 8 N 1.46505 * 109.56901 * 182.41067 * 7 6 5 9 9 C 1.34783 * 119.99718 * 274.71103 * 8 7 6 10 10 O 1.21584 * 120.00186 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99557 * 180.02562 * 9 8 7 12 12 C 1.40030 * 119.99920 * 174.74796 * 11 9 8 13 13 C 1.38908 * 119.99741 * 326.15555 * 12 11 9 14 14 C 1.38007 * 119.99800 * 179.81530 * 13 12 11 15 15 C 1.38906 * 120.00005 * 0.43460 * 14 13 12 16 16 O 1.35783 * 119.99821 * 179.76377 * 15 14 13 17 17 C 1.34815 * 116.99944 * 185.93751 * 16 15 14 18 18 H 1.07999 * 120.00139 * 5.41809 * 17 16 15 19 19 C 1.38624 * 119.99875 * 185.41157 * 17 16 15 20 20 N 1.31581 * 120.00221 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46918 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47065 * 120.00295 * 21 19 17 24 24 H 1.48497 * 109.47515 * 240.00074 * 21 19 17 25 25 C 1.38894 * 120.00102 * 359.79835 * 15 14 13 26 26 C 1.38009 * 120.00468 * 359.97438 * 25 15 14 27 27 C 1.53118 * 109.16173 * 302.34297 * 7 6 5 28 28 C 1.46847 * 110.99895 * 170.00339 * 4 3 2 29 29 H 1.08000 * 119.99987 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.00150 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99987 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47356 * 245.00191 * 3 2 1 33 33 H 1.09001 * 109.47171 * 5.00248 * 3 2 1 34 34 H 1.09005 * 109.46414 * 294.17667 * 5 4 3 35 35 H 1.08999 * 109.46422 * 54.14607 * 5 4 3 36 36 H 1.08992 * 109.50398 * 299.23904 * 6 5 4 37 37 H 1.09001 * 109.50450 * 179.12031 * 6 5 4 38 38 H 1.08999 * 109.52231 * 62.25626 * 7 6 5 39 39 H 0.96993 * 120.00032 * 94.71736 * 8 7 6 40 40 H 0.96999 * 120.00012 * 354.74383 * 11 9 8 41 41 H 1.08002 * 120.00545 * 359.97438 * 13 12 11 42 42 H 1.08007 * 120.00178 * 180.18620 * 14 13 12 43 43 H 0.96994 * 119.99861 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.00167 * 179.97438 * 25 15 14 45 45 H 1.08000 * 120.00394 * 179.97438 * 26 25 15 46 46 H 1.08996 * 109.50492 * 297.72108 * 27 7 6 47 47 H 1.08996 * 109.53158 * 177.61722 * 27 7 6 48 48 H 1.09006 * 109.46335 * 305.85234 * 28 4 3 49 49 H 1.08998 * 109.46746 * 65.83330 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 2.2715 1.3409 2.4116 6 6 3.2686 1.2220 3.5665 7 6 4.2519 2.3944 3.5080 8 7 5.2447 2.2560 4.5764 9 6 4.9741 2.7215 5.8121 10 8 3.9060 3.2557 6.0401 11 7 5.8876 2.5946 6.7949 12 6 5.6531 3.1742 8.0478 13 6 4.9568 4.3728 8.1392 14 6 4.7224 4.9421 9.3743 15 6 5.1904 4.3213 10.5254 16 8 4.9639 4.8839 11.7402 17 6 5.5484 4.2982 12.8046 18 1 6.2335 3.4759 12.6599 19 6 5.2701 4.7514 14.0847 20 7 4.4351 5.7530 14.2611 21 14 6.0805 3.9403 15.5595 22 1 6.9709 2.8463 15.0954 23 1 6.8803 4.9480 16.3011 24 1 5.0350 3.3824 16.4542 25 6 5.8908 3.1253 10.4336 26 6 6.1213 2.5535 9.1989 27 6 4.9584 2.3905 2.1495 28 6 3.9122 2.4755 1.0358 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 2.6212 1.4025 -0.9314 33 1 1.3586 2.1316 0.0896 34 1 1.7149 2.2733 2.5069 35 1 1.5787 0.4999 2.4420 36 1 3.8158 0.2834 3.4796 37 1 2.7316 1.2444 4.5148 38 1 3.7095 3.3314 3.6339 39 1 6.0966 1.8296 4.3946 40 1 6.7075 2.1018 6.6343 41 1 4.5967 4.8578 7.2439 42 1 4.1784 5.8724 9.4456 43 1 4.2407 6.0703 15.1568 44 1 6.2551 2.6428 11.3286 45 1 6.6662 1.6238 9.1276 46 1 5.5321 1.4702 2.0403 47 1 5.6290 3.2473 2.0850 48 1 4.4111 2.4585 0.0668 49 1 3.3480 3.4025 1.1376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251689788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:33 Heat of formation + Delta-G solvation = -23.724333 kcal Electronic energy + Delta-G solvation = -28951.968873 eV Core-core repulsion = 24879.404807 eV Total energy + Delta-G solvation = -4072.564066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.71015 -40.64334 -39.92511 -38.29020 -36.63692 -35.41079 -34.55965 -34.09330 -32.00201 -31.85086 -31.73335 -29.32406 -27.37804 -26.78011 -24.29879 -24.13510 -23.77097 -22.84395 -21.78671 -21.03927 -20.61175 -19.95616 -19.23995 -18.97221 -18.19101 -17.22148 -16.75015 -16.39159 -16.29351 -16.21646 -16.00958 -15.60290 -15.46068 -15.40074 -15.16445 -15.01841 -14.69242 -14.51636 -14.18488 -14.13614 -13.80457 -13.57002 -13.31285 -13.27971 -13.20775 -12.77021 -12.72843 -12.44945 -12.37240 -12.19974 -12.07009 -12.00151 -11.68953 -11.53948 -11.37733 -11.30588 -10.95726 -10.55854 -10.30559 -10.05455 -9.82788 -9.34786 -8.54720 -8.43919 -6.11032 0.54048 0.59922 1.35533 1.37826 1.45743 1.56567 1.62405 2.11754 2.20324 2.86114 2.96549 3.19021 3.22751 3.53285 3.71766 3.83175 4.00511 4.07065 4.09100 4.14986 4.19479 4.28051 4.38595 4.47543 4.51613 4.56207 4.61032 4.65440 4.68813 4.75946 4.77984 4.90177 4.94310 5.03791 5.07494 5.07910 5.15760 5.19867 5.26846 5.32579 5.45212 5.53212 5.60924 5.71064 5.72437 5.74686 6.02996 6.05974 6.10807 6.13565 6.21263 7.00529 7.08398 7.56999 7.82163 8.79889 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027283 B = 0.001629 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.044624 B =17183.888240 C =17487.524817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C 0.079 3.921 4 N -0.537 5.537 5 C 0.065 3.935 6 C -0.121 4.121 7 C 0.164 3.836 8 N -0.720 5.720 9 C 0.697 3.303 10 O -0.621 6.621 11 N -0.663 5.663 12 C 0.086 3.914 13 C -0.074 4.074 14 C -0.188 4.188 15 C 0.105 3.895 16 O -0.233 6.233 17 C -0.410 4.410 18 H 0.107 0.893 19 C -0.027 4.027 20 N -0.923 5.923 21 Si 1.021 2.979 22 H -0.247 1.247 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.217 4.217 26 C -0.082 4.082 27 C -0.111 4.111 28 C 0.057 3.943 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.034 0.966 34 H 0.023 0.977 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.415 0.585 40 H 0.422 0.578 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.271 0.729 44 H 0.132 0.868 45 H 0.159 0.841 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -13.780 -30.949 34.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C -0.048 4.048 4 N -0.261 5.261 5 C -0.064 4.064 6 C -0.160 4.160 7 C 0.058 3.942 8 N -0.376 5.376 9 C 0.398 3.602 10 O -0.501 6.501 11 N -0.312 5.312 12 C -0.009 4.009 13 C -0.094 4.094 14 C -0.208 4.208 15 C 0.054 3.946 16 O -0.140 6.140 17 C -0.486 4.486 18 H 0.124 0.876 19 C -0.224 4.224 20 N -0.562 5.562 21 Si 0.840 3.160 22 H -0.170 1.170 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.237 4.237 26 C -0.102 4.102 27 C -0.150 4.150 28 C -0.071 4.071 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.260 0.740 41 H 0.145 0.855 42 H 0.129 0.871 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.176 0.824 46 H 0.111 0.889 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.478 -13.407 -30.623 33.521 hybrid contribution -0.101 0.505 0.994 1.119 sum 2.377 -12.902 -29.629 32.404 Atomic orbital electron populations 1.24019 0.96043 1.02407 1.00689 1.22909 0.95634 0.98635 0.99728 1.21277 0.94272 0.94793 0.94456 1.61990 1.19494 1.43046 1.01619 1.21943 0.95302 1.00348 0.88783 1.21909 0.97478 0.99448 0.97150 1.20883 0.89100 0.97992 0.86205 1.44965 1.21331 1.64085 1.07174 1.16158 0.83244 0.79356 0.81489 1.90936 1.25903 1.50902 1.82351 1.42130 1.22582 1.57422 1.09113 1.17114 1.05331 0.93843 0.84569 1.20699 0.98453 0.94255 0.96000 1.20230 1.07638 1.02413 0.90504 1.19849 0.95103 0.93097 0.86533 1.83969 1.65899 1.51518 1.12614 1.21903 1.25067 1.18073 0.83599 0.87616 1.26637 0.97433 0.97091 1.01194 1.70219 1.35412 1.26801 1.23773 0.84492 0.77835 0.78170 0.75461 1.16992 1.19508 1.19652 1.21115 1.06297 0.97249 0.99034 1.20793 1.00709 0.99522 0.89219 1.21809 0.97945 1.04489 0.90711 1.22119 0.94016 0.90946 1.00061 0.88726 0.87523 0.86661 0.88455 0.94736 0.95905 0.90341 0.90042 0.93573 0.92362 0.74816 0.73951 0.85527 0.87128 0.91962 0.85014 0.82378 0.88929 0.89447 0.88055 0.95183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.15 -1.68 8.52 25.65 0.22 -1.46 16 3 C 0.08 0.86 5.41 85.55 0.46 1.33 16 4 N -0.54 -6.81 4.65 -900.91 -4.19 -11.00 16 5 C 0.06 1.05 5.31 86.33 0.46 1.51 16 6 C -0.12 -2.17 5.68 30.65 0.17 -2.00 16 7 C 0.16 2.78 2.52 45.07 0.11 2.89 16 8 N -0.72 -12.13 5.09 -457.41 -2.33 -14.46 16 9 C 0.70 18.65 8.27 179.05 1.48 20.13 16 10 O -0.62 -23.16 13.72 -3.98 -0.05 -23.22 16 11 N -0.66 -16.09 5.35 -317.05 -1.70 -17.78 16 12 C 0.09 2.91 6.27 38.15 0.24 3.15 16 13 C -0.07 -2.97 8.64 22.38 0.19 -2.78 16 14 C -0.19 -8.81 9.98 22.38 0.22 -8.59 16 15 C 0.10 5.38 6.65 22.59 0.15 5.53 16 16 O -0.23 -14.33 9.76 -22.95 -0.22 -14.55 16 17 C -0.41 -23.94 9.44 67.91 0.64 -23.30 16 18 H 0.11 5.55 5.29 -2.91 -0.02 5.53 16 19 C -0.03 -1.52 5.49 84.82 0.47 -1.06 16 20 N -0.92 -57.60 13.67 21.61 0.30 -57.30 16 21 Si 1.02 42.89 29.55 68.60 2.03 44.92 16 22 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 C -0.22 -9.33 9.12 22.37 0.20 -9.12 16 26 C -0.08 -2.75 9.96 22.38 0.22 -2.53 16 27 C -0.11 -1.10 5.57 30.65 0.17 -0.93 16 28 C 0.06 0.59 5.46 86.33 0.47 1.06 16 29 H 0.09 0.99 7.84 -2.91 -0.02 0.97 16 30 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.10 0.79 7.99 -2.39 -0.02 0.77 16 33 H 0.03 0.41 7.77 -2.39 -0.02 0.39 16 34 H 0.02 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.08 1.28 7.10 -2.39 -0.02 1.27 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 39 H 0.41 3.80 8.62 -92.71 -0.80 3.00 16 40 H 0.42 6.29 8.83 -92.71 -0.82 5.48 16 41 H 0.13 5.06 6.45 -2.91 -0.02 5.04 16 42 H 0.11 5.22 8.06 -2.91 -0.02 5.19 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 44 H 0.13 5.58 5.71 -2.91 -0.02 5.56 16 45 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 46 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.68 8.02 -2.38 -0.02 0.66 16 49 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -79.55 400.31 0.05 -79.51 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.64 Total: 31.17 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 6.86 Total: -17.28 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -7.92 Total: -100.54 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.28 Total: -37.77 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -79.55 0.05 -79.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251689788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.781 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds