Wall clock time and date at job start Wed Apr 1 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 N 1.46501 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.36946 * 120.00041 * 275.31273 * 4 3 2 6 6 H 1.08003 * 119.99845 * 37.57570 * 5 4 3 7 7 C 1.38813 * 119.99728 * 217.57773 * 5 4 3 8 8 N 1.31617 * 120.00095 * 21.42260 * 7 5 4 9 9 Si 1.86798 * 119.99811 * 201.41875 * 7 5 4 10 10 H 1.48509 * 109.47070 * 60.00026 * 9 7 5 11 11 H 1.48497 * 109.47391 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47256 * 300.00432 * 9 7 5 13 13 C 1.46503 * 120.00305 * 95.30653 * 4 3 2 14 14 C 1.52997 * 109.47188 * 270.00465 * 13 4 3 15 15 N 1.46497 * 109.46777 * 179.97438 * 14 13 4 16 16 C 1.34781 * 119.99757 * 179.97438 * 15 14 13 17 17 O 1.21650 * 120.00148 * 0.02562 * 16 15 14 18 18 C 1.47060 * 119.99757 * 179.97438 * 16 15 14 19 19 C 1.35877 * 125.42386 * 180.02562 * 18 16 15 20 20 C 1.41595 * 107.74593 * 179.73477 * 19 18 16 21 21 C 1.40137 * 133.28585 * 179.97438 * 20 19 18 22 22 C 1.37847 * 119.67069 * 180.02562 * 21 20 19 23 23 O 1.35984 * 119.82242 * 180.02562 * 22 21 20 24 24 C 1.42897 * 117.00153 * 179.97438 * 23 22 21 25 25 C 1.39374 * 120.35425 * 359.97230 * 22 21 20 26 26 C 1.37595 * 120.60874 * 0.02562 * 25 22 21 27 27 C 1.39216 * 120.02397 * 359.97438 * 26 25 22 28 28 N 1.37676 * 133.03433 * 179.97438 * 27 26 25 29 29 H 0.96993 * 125.61170 * 0.03581 * 28 27 26 30 30 H 1.09003 * 109.47207 * 300.00225 * 1 2 3 31 31 H 1.09002 * 109.47113 * 59.99800 * 1 2 3 32 32 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47516 * 240.00444 * 2 1 3 34 34 H 1.09004 * 109.47078 * 119.99651 * 2 1 3 35 35 H 1.09001 * 109.47296 * 60.00335 * 3 2 1 36 36 H 1.08995 * 109.47419 * 299.99743 * 3 2 1 37 37 H 0.97004 * 119.99926 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.46840 * 150.00119 * 13 4 3 39 39 H 1.09000 * 109.46689 * 30.00462 * 13 4 3 40 40 H 1.08996 * 109.47092 * 59.99417 * 14 13 4 41 41 H 1.09000 * 109.47303 * 299.99620 * 14 13 4 42 42 H 0.97003 * 120.00416 * 359.97438 * 15 14 13 43 43 H 1.08002 * 126.12782 * 359.75417 * 19 18 16 44 44 H 1.08001 * 120.16495 * 0.02888 * 21 20 19 45 45 H 1.08993 * 109.47295 * 180.02562 * 24 23 22 46 46 H 1.09006 * 109.47024 * 300.00086 * 24 23 22 47 47 H 1.09001 * 109.46937 * 59.99577 * 24 23 22 48 48 H 1.08005 * 119.69796 * 179.97438 * 25 22 21 49 49 H 1.08001 * 119.99587 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3329 1.1818 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0514 1.3742 8 7 5.6020 3.1240 0.6503 9 14 6.5967 1.4961 2.6605 10 1 7.0656 0.1246 2.3369 11 1 7.7542 2.4263 2.6693 12 1 5.9522 1.4960 3.9984 13 6 4.2381 1.5597 -1.2624 14 6 4.4933 0.1642 -1.8353 15 7 5.2258 0.2815 -3.0985 16 6 5.5634 -0.8269 -3.7871 17 8 5.2594 -1.9246 -3.3599 18 6 6.2983 -0.7091 -5.0555 19 6 6.6922 -1.7486 -5.8369 20 6 7.3608 -1.2121 -6.9639 21 6 7.9712 -1.7912 -8.0846 22 6 8.5544 -0.9836 -9.0374 23 8 9.1472 -1.5422 -10.1264 24 6 9.7323 -0.6492 -11.0762 25 6 8.5388 0.4023 -8.8913 26 6 7.9431 0.9847 -7.7962 27 6 7.3479 0.1887 -6.8214 28 7 6.6920 0.4759 -5.6455 29 1 6.5330 1.3642 -5.2900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 6.4208 3.6263 0.7850 38 1 5.1904 2.0593 -1.0846 39 1 3.6493 2.1416 -1.9715 40 1 3.5409 -0.3354 -2.0129 41 1 5.0820 -0.4177 -1.1261 42 1 5.4679 1.1568 -3.4394 43 1 6.5250 -2.7962 -5.6348 44 1 7.9847 -2.8648 -8.2011 45 1 10.1690 -1.2231 -11.8934 46 1 8.9642 0.0165 -11.4700 47 1 10.5094 -0.0596 -10.5897 48 1 8.9993 1.0250 -9.6441 49 1 7.9371 2.0597 -7.6928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266568489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:28 Heat of formation + Delta-G solvation = -2.010117 kcal Electronic energy + Delta-G solvation = -29179.086123 eV Core-core repulsion = 25107.463656 eV Total energy + Delta-G solvation = -4071.622467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71202 -39.71561 -38.86723 -36.55960 -35.78688 -34.43003 -32.93807 -32.37912 -30.92609 -29.63411 -29.44838 -27.97269 -27.11729 -25.61536 -24.49221 -23.06531 -22.18957 -21.29958 -20.93210 -20.33738 -19.94244 -18.62078 -17.83069 -17.28630 -16.62326 -16.00350 -15.96715 -15.44751 -15.41596 -14.98391 -14.65048 -14.43594 -14.23059 -13.96900 -13.89194 -13.75651 -13.37621 -13.26456 -13.02866 -12.87438 -12.83641 -12.69742 -12.26388 -12.16275 -11.62432 -11.57731 -11.24132 -10.99060 -10.98520 -10.78449 -10.77157 -10.52506 -10.42178 -10.16949 -10.04594 -10.00834 -9.97454 -9.68110 -8.75689 -8.54445 -8.16457 -7.76152 -6.69093 -5.90569 -3.49111 0.56603 1.42125 2.02932 2.76083 3.05456 3.30412 3.37158 3.37856 3.42399 3.43105 3.65544 4.40823 4.42621 4.63578 4.72918 4.83652 4.85134 4.94379 5.12168 5.15525 5.20333 5.22501 5.36018 5.41308 5.63290 5.68254 5.72268 5.77931 5.92483 6.00998 6.03505 6.10472 6.12877 6.23732 6.26510 6.35809 6.47242 6.50409 6.57464 6.60519 6.65225 6.73494 6.90962 6.93839 7.13494 7.18828 7.23887 7.43110 7.71187 7.74352 8.31452 8.41427 9.07572 9.69476 10.27100 11.09666 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.002146 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.682302 B =13042.357450 C =14072.992945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.096 3.904 15 N -0.715 5.715 16 C 0.573 3.427 17 O -0.525 6.525 18 C 0.040 3.960 19 C -0.123 4.123 20 C -0.078 4.078 21 C -0.103 4.103 22 C 0.093 3.907 23 O -0.320 6.320 24 C 0.029 3.971 25 C -0.169 4.169 26 C -0.090 4.090 27 C 0.081 3.919 28 N -0.577 5.577 29 H 0.419 0.581 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.034 0.966 37 H 0.255 0.745 38 H 0.099 0.901 39 H 0.029 0.971 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.392 0.608 43 H 0.157 0.843 44 H 0.133 0.867 45 H 0.097 0.903 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.132 0.868 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 -2.592 -20.772 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.365 5.365 16 C 0.358 3.642 17 O -0.401 6.401 18 C -0.071 4.071 19 C -0.150 4.150 20 C -0.082 4.082 21 C -0.123 4.123 22 C 0.048 3.952 23 O -0.234 6.234 24 C -0.066 4.066 25 C -0.189 4.189 26 C -0.111 4.111 27 C -0.028 4.028 28 N -0.182 5.182 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.225 0.775 43 H 0.175 0.825 44 H 0.151 0.849 45 H 0.115 0.885 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.150 0.850 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.126 -3.295 -20.324 20.999 hybrid contribution 0.862 0.915 0.545 1.370 sum 4.987 -2.380 -19.780 20.537 Atomic orbital electron populations 1.21720 0.97294 1.00455 1.00995 1.22187 0.93864 1.00871 1.01619 1.20950 0.84951 0.93029 0.98959 1.43584 0.99455 1.84782 1.01972 1.18989 1.05689 1.20481 0.93926 0.92017 1.25185 1.00826 0.94504 0.98153 1.69982 1.25756 1.14725 1.42564 0.86461 0.80935 0.78338 0.81648 1.20707 1.21599 1.20548 1.21062 1.00384 0.91036 0.86588 1.22588 0.94958 1.03162 0.82173 1.46079 1.57707 1.07792 1.24882 1.17250 0.79393 0.85222 0.82341 1.90845 1.54627 1.26165 1.68459 1.20438 1.04578 0.85647 0.96437 1.20835 1.01899 0.98967 0.93300 1.17851 1.02459 0.91880 0.96056 1.19691 1.00661 0.99673 0.92234 1.18548 0.97029 0.91154 0.88509 1.86073 1.70569 1.35592 1.31170 1.23007 0.97416 0.94762 0.91461 1.20948 1.04637 0.93610 0.99713 1.19843 0.99539 0.98931 0.92777 1.18252 1.00719 0.94557 0.89249 1.41969 1.49306 1.08001 1.18913 0.74226 0.93191 0.93486 0.93758 0.92924 0.92295 0.93510 0.94759 0.93465 0.88391 0.95309 0.92537 0.91283 0.77478 0.82540 0.84903 0.88458 0.92836 0.92817 0.85029 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.15 0.37 -1.77 16 2 C -0.15 -2.60 6.23 -26.73 -0.17 -2.77 16 3 C 0.15 2.98 5.72 -4.04 -0.02 2.95 16 4 N -0.58 -13.53 2.43 -173.23 -0.42 -13.95 16 5 C -0.26 -6.82 9.45 -15.05 -0.14 -6.97 16 6 H 0.06 1.63 7.92 -52.48 -0.42 1.21 16 7 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -24.13 11.47 55.49 0.64 -23.49 16 9 Si 0.90 21.07 29.60 -169.99 -5.03 16.04 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.14 2.91 5.45 -4.04 -0.02 2.89 16 14 C 0.10 1.87 6.00 -4.04 -0.02 1.84 16 15 N -0.71 -11.45 5.55 -61.50 -0.34 -11.79 16 16 C 0.57 9.61 7.80 -12.68 -0.10 9.51 16 17 O -0.52 -10.67 16.84 5.23 0.09 -10.58 16 18 C 0.04 0.56 6.96 -82.31 -0.57 -0.02 16 19 C -0.12 -1.68 10.53 -39.15 -0.41 -2.09 16 20 C -0.08 -0.98 6.16 -106.93 -0.66 -1.64 16 21 C -0.10 -1.19 10.04 -39.01 -0.39 -1.58 16 22 C 0.09 0.99 6.67 -39.30 -0.26 0.72 16 23 O -0.32 -3.14 10.49 -19.69 -0.21 -3.35 16 24 C 0.03 0.16 9.81 101.05 0.99 1.15 16 25 C -0.17 -1.53 9.01 -39.39 -0.35 -1.88 16 26 C -0.09 -0.86 10.06 -39.45 -0.40 -1.25 16 27 C 0.08 0.94 7.25 -83.91 -0.61 0.33 16 28 N -0.58 -6.52 6.08 -7.33 -0.04 -6.56 16 29 H 0.42 3.65 8.12 -40.82 -0.33 3.32 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 37 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.10 2.34 5.52 -51.93 -0.29 2.05 16 39 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 40 H 0.06 1.12 6.64 -51.93 -0.34 0.78 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.39 5.15 7.53 -40.82 -0.31 4.84 16 43 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.05 0.25 7.65 -51.93 -0.40 -0.15 16 47 H 0.05 0.25 7.65 -51.93 -0.40 -0.14 16 48 H 0.13 0.83 6.26 -52.48 -0.33 0.51 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -31.43 404.82 -9.41 -40.84 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.33 Total: 7.02 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.86 Total: -0.28 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.17 Total: -55.79 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.12 Total: -13.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.43 -9.41 -40.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266568489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.832 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds