Wall clock time and date at job start Wed Apr 1 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47186 * 2 1 4 4 N 1.46501 * 109.47271 * 179.97438 * 3 2 1 5 5 C 1.36946 * 120.00041 * 275.31273 * 4 3 2 6 6 H 1.08003 * 119.99845 * 37.57570 * 5 4 3 7 7 C 1.38813 * 119.99728 * 217.57773 * 5 4 3 8 8 N 1.31617 * 120.00095 * 21.42260 * 7 5 4 9 9 Si 1.86798 * 119.99811 * 201.41875 * 7 5 4 10 10 H 1.48509 * 109.47070 * 60.00026 * 9 7 5 11 11 H 1.48497 * 109.47391 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47256 * 300.00432 * 9 7 5 13 13 C 1.46503 * 120.00305 * 95.30653 * 4 3 2 14 14 C 1.52997 * 109.47188 * 270.00465 * 13 4 3 15 15 N 1.46497 * 109.46777 * 179.97438 * 14 13 4 16 16 C 1.34781 * 119.99757 * 179.97438 * 15 14 13 17 17 O 1.21650 * 120.00148 * 0.02562 * 16 15 14 18 18 C 1.47060 * 119.99757 * 179.97438 * 16 15 14 19 19 C 1.35877 * 125.42386 * 180.02562 * 18 16 15 20 20 C 1.41595 * 107.74593 * 179.73477 * 19 18 16 21 21 C 1.40137 * 133.28585 * 179.97438 * 20 19 18 22 22 C 1.37847 * 119.67069 * 180.02562 * 21 20 19 23 23 O 1.35984 * 119.82242 * 180.02562 * 22 21 20 24 24 C 1.42897 * 117.00153 * 179.97438 * 23 22 21 25 25 C 1.39374 * 120.35425 * 359.97230 * 22 21 20 26 26 C 1.37595 * 120.60874 * 0.02562 * 25 22 21 27 27 C 1.39216 * 120.02397 * 359.97438 * 26 25 22 28 28 N 1.37676 * 133.03433 * 179.97438 * 27 26 25 29 29 H 0.96993 * 125.61170 * 0.03581 * 28 27 26 30 30 H 1.09003 * 109.47207 * 300.00225 * 1 2 3 31 31 H 1.09002 * 109.47113 * 59.99800 * 1 2 3 32 32 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47516 * 240.00444 * 2 1 3 34 34 H 1.09004 * 109.47078 * 119.99651 * 2 1 3 35 35 H 1.09001 * 109.47296 * 60.00335 * 3 2 1 36 36 H 1.08995 * 109.47419 * 299.99743 * 3 2 1 37 37 H 0.97004 * 119.99926 * 179.97438 * 8 7 5 38 38 H 1.08996 * 109.46840 * 150.00119 * 13 4 3 39 39 H 1.09000 * 109.46689 * 30.00462 * 13 4 3 40 40 H 1.08996 * 109.47092 * 59.99417 * 14 13 4 41 41 H 1.09000 * 109.47303 * 299.99620 * 14 13 4 42 42 H 0.97003 * 120.00416 * 359.97438 * 15 14 13 43 43 H 1.08002 * 126.12782 * 359.75417 * 19 18 16 44 44 H 1.08001 * 120.16495 * 0.02888 * 21 20 19 45 45 H 1.08993 * 109.47295 * 180.02562 * 24 23 22 46 46 H 1.09006 * 109.47024 * 300.00086 * 24 23 22 47 47 H 1.09001 * 109.46937 * 59.99577 * 24 23 22 48 48 H 1.08005 * 119.69796 * 179.97438 * 25 22 21 49 49 H 1.08001 * 119.99587 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.3329 1.1818 6 1 3.8169 0.6875 1.9636 7 6 5.3612 2.0514 1.3742 8 7 5.6020 3.1240 0.6503 9 14 6.5967 1.4961 2.6605 10 1 7.0656 0.1246 2.3369 11 1 7.7542 2.4263 2.6693 12 1 5.9522 1.4960 3.9984 13 6 4.2381 1.5597 -1.2624 14 6 4.4933 0.1642 -1.8353 15 7 5.2258 0.2815 -3.0985 16 6 5.5634 -0.8269 -3.7871 17 8 5.2594 -1.9246 -3.3599 18 6 6.2983 -0.7091 -5.0555 19 6 6.6922 -1.7486 -5.8369 20 6 7.3608 -1.2121 -6.9639 21 6 7.9712 -1.7912 -8.0846 22 6 8.5544 -0.9836 -9.0374 23 8 9.1472 -1.5422 -10.1264 24 6 9.7323 -0.6492 -11.0762 25 6 8.5388 0.4023 -8.8913 26 6 7.9431 0.9847 -7.7962 27 6 7.3479 0.1887 -6.8214 28 7 6.6920 0.4759 -5.6455 29 1 6.5330 1.3642 -5.2900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 6.4208 3.6263 0.7850 38 1 5.1904 2.0593 -1.0846 39 1 3.6493 2.1416 -1.9715 40 1 3.5409 -0.3354 -2.0129 41 1 5.0820 -0.4177 -1.1261 42 1 5.4679 1.1568 -3.4394 43 1 6.5250 -2.7962 -5.6348 44 1 7.9847 -2.8648 -8.2011 45 1 10.1690 -1.2231 -11.8934 46 1 8.9642 0.0165 -11.4700 47 1 10.5094 -0.0596 -10.5897 48 1 8.9993 1.0250 -9.6441 49 1 7.9371 2.0597 -7.6928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266568489.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:27 Heat of formation + Delta-G solvation = -21.136027 kcal Electronic energy + Delta-G solvation = -29179.915485 eV Core-core repulsion = 25107.463656 eV Total energy + Delta-G solvation = -4072.451828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.65338 -40.72638 -39.94742 -38.26665 -36.61479 -35.90803 -34.61926 -33.26705 -32.66876 -30.71747 -30.39151 -29.29077 -27.68228 -27.35016 -25.82590 -24.40031 -23.10980 -22.66473 -22.11851 -21.83956 -21.21460 -19.69975 -18.65489 -18.61182 -18.05585 -17.07487 -16.98934 -16.69457 -16.61304 -16.47915 -15.95910 -15.75916 -15.63243 -15.21286 -14.91888 -14.85585 -14.63780 -14.35983 -14.28489 -14.18088 -14.12504 -13.69429 -13.35236 -13.10255 -12.94380 -12.90828 -12.75437 -12.65134 -12.53559 -12.25944 -12.06125 -11.88178 -11.72467 -11.69451 -11.50047 -11.47401 -11.25696 -10.93669 -10.55403 -10.21397 -9.09261 -8.60798 -8.59882 -7.88268 -5.50506 -0.36891 0.59575 0.99297 1.43017 1.46751 1.52531 1.79614 2.00665 2.21070 2.46300 2.49625 2.80870 3.19402 3.57808 3.67896 3.78409 3.97842 4.03239 4.20302 4.26448 4.32052 4.35817 4.37994 4.44493 4.49585 4.49745 4.52262 4.67118 4.70318 4.79093 4.83455 4.84564 4.98890 5.01667 5.11279 5.12315 5.21088 5.23801 5.27338 5.32869 5.39889 5.43535 5.57953 5.61880 5.63312 5.70799 5.81430 6.31320 6.42969 6.48527 6.53894 6.98590 7.13563 7.80478 8.32478 9.07415 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.002146 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.682302 B =13042.357450 C =14072.992945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.269 4.269 6 H 0.051 0.949 7 C -0.027 4.027 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.144 3.856 14 C 0.118 3.882 15 N -0.705 5.705 16 C 0.577 3.423 17 O -0.567 6.567 18 C 0.023 3.977 19 C -0.127 4.127 20 C -0.098 4.098 21 C -0.123 4.123 22 C 0.091 3.909 23 O -0.338 6.338 24 C 0.018 3.982 25 C -0.159 4.159 26 C -0.088 4.088 27 C 0.076 3.924 28 N -0.564 5.564 29 H 0.431 0.569 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.408 0.592 43 H 0.153 0.847 44 H 0.134 0.866 45 H 0.114 0.886 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.165 0.835 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -1.354 -23.030 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.400 4.400 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.017 3.983 14 C -0.008 4.008 15 N -0.356 5.356 16 C 0.364 3.636 17 O -0.446 6.446 18 C -0.088 4.088 19 C -0.155 4.155 20 C -0.103 4.103 21 C -0.143 4.143 22 C 0.046 3.954 23 O -0.253 6.253 24 C -0.077 4.077 25 C -0.179 4.179 26 C -0.108 4.108 27 C -0.033 4.033 28 N -0.170 5.170 29 H 0.272 0.728 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.244 0.756 43 H 0.171 0.829 44 H 0.152 0.848 45 H 0.133 0.867 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.182 0.818 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.554 -2.016 -22.604 23.146 hybrid contribution 0.782 0.522 1.057 1.414 sum 5.336 -1.494 -21.547 22.248 Atomic orbital electron populations 1.21653 0.94294 1.01769 1.01987 1.22024 0.96410 0.98798 1.00319 1.21057 0.83270 0.94515 0.99142 1.43811 1.00847 1.85022 1.01881 1.19111 1.06234 1.19915 0.94714 0.93085 1.25725 1.02065 0.94741 0.99997 1.70065 1.25965 1.15394 1.43786 0.85646 0.79167 0.77417 0.80058 1.21324 1.21433 1.20057 1.20935 0.99361 0.91665 0.86325 1.22063 0.94482 1.01441 0.82788 1.45830 1.57309 1.08722 1.23714 1.17527 0.78732 0.84448 0.82868 1.90814 1.56397 1.27651 1.69763 1.19892 1.06140 0.87015 0.95777 1.20963 1.01743 0.98954 0.93827 1.17935 1.03380 0.92713 0.96271 1.19805 1.01627 1.00177 0.92688 1.18716 0.96388 0.91848 0.88459 1.86062 1.70549 1.37272 1.31385 1.23336 0.98053 0.95087 0.91188 1.21345 1.03370 0.93215 0.99976 1.20228 0.98380 1.00359 0.91855 1.18550 1.00761 0.94511 0.89511 1.41822 1.48809 1.07713 1.18691 0.72828 0.92603 0.92090 0.92316 0.93550 0.94273 0.94610 0.93136 0.93676 0.90701 0.93487 0.92783 0.94700 0.75596 0.82918 0.84826 0.86737 0.91489 0.91595 0.81768 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.14 -4.81 6.23 30.59 0.19 -4.62 16 3 C 0.15 5.84 5.72 86.38 0.49 6.33 16 4 N -0.60 -28.17 2.43 -701.99 -1.71 -29.88 16 5 C -0.27 -14.33 9.45 84.03 0.79 -13.54 16 6 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 7 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 8 N -0.91 -49.80 11.47 21.65 0.25 -49.55 16 9 Si 0.95 43.88 29.60 68.60 2.03 45.92 16 10 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.14 6.18 5.45 86.38 0.47 6.65 16 14 C 0.12 4.70 6.00 86.38 0.52 5.22 16 15 N -0.71 -22.78 5.55 -466.73 -2.59 -25.37 16 16 C 0.58 19.82 7.80 86.56 0.68 20.49 16 17 O -0.57 -23.98 16.84 -4.19 -0.07 -24.05 16 18 C 0.02 0.64 6.96 39.92 0.28 0.92 16 19 C -0.13 -3.56 10.53 22.55 0.24 -3.33 16 20 C -0.10 -2.46 6.16 -21.36 -0.13 -2.59 16 21 C -0.12 -2.80 10.04 22.64 0.23 -2.57 16 22 C 0.09 1.77 6.67 22.45 0.15 1.92 16 23 O -0.34 -5.96 10.49 -93.37 -0.98 -6.94 16 24 C 0.02 0.14 9.81 113.37 1.11 1.26 16 25 C -0.16 -2.34 9.01 22.39 0.20 -2.14 16 26 C -0.09 -1.38 10.06 22.35 0.22 -1.16 16 27 C 0.08 1.64 7.25 39.09 0.28 1.93 16 28 N -0.56 -12.13 6.08 -177.11 -1.08 -13.20 16 29 H 0.43 6.80 8.12 -92.71 -0.75 6.05 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.69 6.64 -2.39 -0.02 1.67 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 36 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 37 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 38 H 0.08 3.62 5.52 -2.39 -0.01 3.61 16 39 H 0.05 1.81 7.86 -2.39 -0.02 1.80 16 40 H 0.05 2.18 6.64 -2.39 -0.02 2.16 16 41 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.41 10.51 7.53 -92.71 -0.70 9.81 16 43 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.07 0.38 7.65 -2.38 -0.02 0.36 16 47 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 48 H 0.16 1.30 6.26 -2.91 -0.02 1.28 16 49 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -69.27 404.82 2.24 -67.03 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -0.47 Total: 25.39 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.86 Total: 10.66 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -5.13 Total: -118.00 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.05 Total: -30.99 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.27 2.24 -67.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266568489.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.892 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds