Wall clock time and date at job start Wed Apr 1 2020 03:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 N 1.46501 * 109.46974 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00142 * 269.99620 * 4 3 2 6 6 H 1.08001 * 120.00017 * 38.14147 * 5 4 3 7 7 C 1.38806 * 120.00420 * 218.13458 * 5 4 3 8 8 N 1.31623 * 119.99910 * 21.28955 * 7 5 4 9 9 Si 1.86800 * 120.00446 * 201.29223 * 7 5 4 10 10 H 1.48504 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47190 * 119.99453 * 9 7 5 12 12 H 1.48501 * 109.47331 * 240.00001 * 9 7 5 13 13 C 1.46500 * 119.99741 * 90.00635 * 4 3 2 14 14 C 1.52999 * 109.46832 * 264.49670 * 13 4 3 15 15 N 1.46500 * 109.46832 * 179.97438 * 14 13 4 16 16 C 1.34782 * 119.99880 * 180.02562 * 15 14 13 17 17 O 1.21584 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.47596 * 119.99706 * 180.02562 * 16 15 14 19 19 C 1.39763 * 120.08541 * 0.02562 * 18 16 15 20 20 C 1.37638 * 119.94150 * 179.97438 * 19 18 16 21 21 C 1.39324 * 120.06461 * 359.75950 * 20 19 18 22 22 C 1.39003 * 120.07829 * 0.48779 * 21 20 19 23 23 C 1.37657 * 120.15754 * 359.50677 * 22 21 20 24 24 C 1.50696 * 119.78081 * 179.75341 * 22 21 20 25 25 C 1.52905 * 109.49435 * 325.84173 * 24 22 21 26 26 C 1.50499 * 109.87074 * 48.52464 * 25 24 22 27 27 O 1.21273 * 119.59558 * 144.82343 * 26 25 24 28 28 N 1.34523 * 120.80280 * 324.79669 * 26 25 24 29 29 H 1.08997 * 109.47416 * 299.99290 * 1 2 3 30 30 H 1.08995 * 109.47338 * 60.00232 * 1 2 3 31 31 H 1.09008 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47335 * 239.99895 * 2 1 3 33 33 H 1.09004 * 109.47276 * 120.00617 * 2 1 3 34 34 H 1.09006 * 109.46461 * 60.00203 * 3 2 1 35 35 H 1.08991 * 109.47143 * 300.00428 * 3 2 1 36 36 H 0.97004 * 120.00173 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46992 * 144.49687 * 13 4 3 38 38 H 1.08998 * 109.46971 * 24.49661 * 13 4 3 39 39 H 1.09003 * 109.47319 * 60.00216 * 14 13 4 40 40 H 1.08998 * 109.47335 * 299.99768 * 14 13 4 41 41 H 0.97003 * 120.00244 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.03059 * 359.94657 * 19 18 16 43 43 H 1.08004 * 119.95395 * 180.02562 * 20 19 18 44 44 H 1.07999 * 120.04480 * 180.26134 * 23 22 21 45 45 H 1.09003 * 109.46738 * 205.83275 * 24 22 21 46 46 H 1.09000 * 109.46417 * 85.84522 * 24 22 21 47 47 H 1.09003 * 109.40251 * 288.39946 * 25 24 22 48 48 H 1.09000 * 109.40725 * 168.65109 * 25 24 22 49 49 H 0.96998 * 119.71917 * 180.78318 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8218 0.8652 2.0222 7 6 5.3550 2.1849 1.3154 8 7 5.5887 3.1902 0.4985 9 14 6.5924 1.7572 2.6479 10 1 6.0976 0.5946 3.4281 11 1 7.8952 1.4157 2.0223 12 1 6.7678 2.9215 3.5528 13 6 4.2380 1.4424 -1.2678 14 6 4.6128 0.0065 -1.6401 15 7 5.3452 0.0063 -2.9088 16 6 5.7787 -1.1557 -3.4366 17 8 5.5623 -2.2037 -2.8594 18 6 6.5172 -1.1557 -4.7145 19 6 6.7683 0.0482 -5.3786 20 6 7.4576 0.0447 -6.5700 21 6 7.9094 -1.1568 -7.1115 22 6 7.6561 -2.3557 -6.4551 23 6 6.9674 -2.3595 -5.2633 24 6 8.1430 -3.6519 -7.0498 25 6 8.0827 -3.5680 -8.5753 26 6 8.7179 -2.2862 -9.0426 27 8 9.3410 -2.2710 -10.0830 28 7 8.6026 -1.1570 -8.3206 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9563 -0.8899 36 1 6.4036 3.7087 0.5882 37 1 5.1441 2.0392 -1.1638 38 1 3.6101 1.8685 -2.0503 39 1 3.7066 -0.5903 -1.7441 40 1 5.2407 -0.4196 -0.8576 41 1 5.5183 0.8425 -3.3691 42 1 6.4214 0.9803 -4.9576 43 1 7.6522 0.9749 -7.0831 44 1 6.7753 -3.2916 -4.7527 45 1 7.5100 -4.4699 -6.7056 46 1 9.1713 -3.8318 -6.7362 47 1 7.0420 -3.5954 -8.8986 48 1 8.6167 -4.4150 -9.0060 49 1 9.0087 -0.3370 -8.6423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267315392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:47 Heat of formation + Delta-G solvation = -42.562961 kcal Electronic energy + Delta-G solvation = -29460.109592 eV Core-core repulsion = 25386.728623 eV Total energy + Delta-G solvation = -4073.380970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.39938 -39.75935 -38.43696 -36.51654 -35.47981 -34.54945 -34.19102 -32.91136 -30.95836 -30.47610 -30.12230 -27.96949 -25.59515 -25.03999 -24.36615 -23.25846 -22.82743 -21.08000 -20.83521 -20.16436 -19.24940 -18.38826 -17.56160 -17.31779 -16.59698 -16.33913 -15.57653 -15.32811 -15.21494 -14.77682 -14.59344 -14.47307 -14.28805 -14.08553 -13.98151 -13.69209 -13.59091 -13.33561 -13.00656 -12.86714 -12.80934 -12.59565 -12.15347 -11.86393 -11.62013 -11.52631 -11.37249 -11.19382 -10.97837 -10.95795 -10.77153 -10.46397 -10.45291 -10.37494 -10.10787 -9.91584 -9.82725 -9.60097 -9.21794 -8.65089 -8.54176 -8.31860 -6.65253 -5.85517 -3.46895 0.50990 0.99673 2.02383 2.59227 2.91698 3.31447 3.41281 3.44371 3.47842 3.74693 3.91855 4.20596 4.29029 4.43285 4.51317 4.69078 4.78642 4.84461 4.98128 5.07467 5.24551 5.28784 5.35236 5.44734 5.52261 5.61754 5.63899 5.72443 5.74218 5.87456 5.99147 6.07940 6.10149 6.21932 6.24724 6.26547 6.39130 6.40492 6.51163 6.59319 6.63850 6.73431 6.82659 6.94514 6.99372 7.14266 7.50802 7.52890 7.77964 7.86543 8.44462 8.51117 9.11112 9.72812 10.30717 11.12746 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.002256 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.179469 B =12410.181076 C =13369.262684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.135 3.865 14 C 0.099 3.901 15 N -0.714 5.714 16 C 0.551 3.449 17 O -0.545 6.545 18 C -0.146 4.146 19 C -0.054 4.054 20 C -0.157 4.157 21 C 0.177 3.823 22 C -0.135 4.135 23 C -0.024 4.024 24 C -0.076 4.076 25 C -0.139 4.139 26 C 0.522 3.478 27 O -0.529 6.529 28 N -0.661 5.661 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.395 0.605 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.110 0.890 49 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 -7.935 -16.764 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.389 4.389 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.007 3.993 14 C -0.026 4.026 15 N -0.364 5.364 16 C 0.337 3.663 17 O -0.424 6.424 18 C -0.150 4.150 19 C -0.074 4.074 20 C -0.178 4.178 21 C 0.080 3.920 22 C -0.138 4.138 23 C -0.044 4.044 24 C -0.114 4.114 25 C -0.178 4.178 26 C 0.311 3.689 27 O -0.404 6.404 28 N -0.305 5.305 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.230 0.770 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.124 0.876 48 H 0.129 0.871 49 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.435 -8.711 -16.881 19.152 hybrid contribution 0.970 0.704 0.374 1.256 sum 3.405 -8.007 -16.507 18.659 Atomic orbital electron populations 1.21720 0.97318 1.00408 1.01019 1.22204 0.93853 1.00974 1.01526 1.20952 0.85012 0.92878 0.99012 1.43602 0.99426 1.85079 1.01807 1.19049 1.06037 1.22584 0.91278 0.92051 1.25187 1.00849 0.94649 0.97957 1.69981 1.25917 1.17161 1.39809 0.86352 0.81523 0.78110 0.81589 1.19949 1.21374 1.21592 1.21082 0.99582 0.91746 0.86886 1.22455 0.94962 1.02475 0.82732 1.46071 1.56863 1.08268 1.25221 1.18131 0.79323 0.84339 0.84483 1.90765 1.57857 1.31422 1.62351 1.20078 1.03807 0.94066 0.97017 1.21205 0.95042 0.97672 0.93450 1.20740 1.02473 0.96506 0.98051 1.17787 0.93904 0.94349 0.85986 1.19389 1.04140 0.93639 0.96609 1.20961 0.92506 0.98397 0.92513 1.20442 1.02983 0.95152 0.92788 1.21718 1.03645 0.95259 0.97214 1.20829 0.79323 0.85569 0.83177 1.90785 1.40592 1.85575 1.23459 1.43558 1.53152 1.13362 1.20439 0.93197 0.93453 0.93813 0.92988 0.92370 0.93259 0.94973 0.93586 0.88474 0.95199 0.92814 0.91495 0.76997 0.84607 0.84716 0.83877 0.88603 0.89709 0.87631 0.87147 0.74979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.15 0.37 -1.74 16 2 C -0.15 -2.58 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.98 5.71 -4.04 -0.02 2.95 16 4 N -0.58 -13.58 2.43 -173.24 -0.42 -14.00 16 5 C -0.26 -6.79 9.42 -15.06 -0.14 -6.93 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 7 C 0.01 0.37 5.00 -17.43 -0.09 0.28 16 8 N -0.89 -24.09 11.43 55.49 0.63 -23.46 16 9 Si 0.90 21.06 29.60 -169.99 -5.03 16.03 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.13 2.86 5.50 -4.04 -0.02 2.84 16 14 C 0.10 1.94 5.97 -4.04 -0.02 1.91 16 15 N -0.71 -11.44 5.51 -61.33 -0.34 -11.77 16 16 C 0.55 8.93 7.76 -12.44 -0.10 8.84 16 17 O -0.54 -10.82 16.34 5.29 0.09 -10.73 16 18 C -0.15 -1.79 5.88 -104.95 -0.62 -2.41 16 19 C -0.05 -0.53 9.53 -39.23 -0.37 -0.90 16 20 C -0.16 -1.28 9.90 -39.40 -0.39 -1.67 16 21 C 0.18 1.52 6.51 -83.74 -0.55 0.97 16 22 C -0.14 -1.20 5.65 -104.55 -0.59 -1.79 16 23 C -0.02 -0.26 9.22 -39.23 -0.36 -0.63 16 24 C -0.08 -0.49 6.00 -27.93 -0.17 -0.66 16 25 C -0.14 -0.88 6.08 -28.03 -0.17 -1.05 16 26 C 0.52 4.82 7.72 -11.20 -0.09 4.73 16 27 O -0.53 -6.72 17.91 5.56 0.10 -6.62 16 28 N -0.66 -5.26 5.34 -9.98 -0.05 -5.31 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.25 6.67 8.31 -40.82 -0.34 6.34 16 37 H 0.10 2.33 5.53 -51.93 -0.29 2.04 16 38 H 0.03 0.58 7.83 -51.93 -0.41 0.18 16 39 H 0.05 1.08 6.66 -51.93 -0.35 0.73 16 40 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.40 5.23 6.49 -40.82 -0.27 4.96 16 42 H 0.14 1.11 6.39 -52.49 -0.34 0.77 16 43 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.14 1.56 7.64 -52.49 -0.40 1.15 16 45 H 0.10 0.48 8.06 -51.93 -0.42 0.06 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.41 2.66 8.82 -40.82 -0.36 2.30 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -32.57 401.28 -9.82 -42.38 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.35 Total: 5.44 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.50 Total: 2.00 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.18 Total: -54.54 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.19 Total: -17.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.57 -9.82 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267315392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.178 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds