Wall clock time and date at job start Wed Apr 1 2020 03:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 N 1.46501 * 109.46974 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00142 * 269.99620 * 4 3 2 6 6 H 1.08001 * 120.00017 * 38.14147 * 5 4 3 7 7 C 1.38806 * 120.00420 * 218.13458 * 5 4 3 8 8 N 1.31623 * 119.99910 * 21.28955 * 7 5 4 9 9 Si 1.86800 * 120.00446 * 201.29223 * 7 5 4 10 10 H 1.48504 * 109.46921 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47190 * 119.99453 * 9 7 5 12 12 H 1.48501 * 109.47331 * 240.00001 * 9 7 5 13 13 C 1.46500 * 119.99741 * 90.00635 * 4 3 2 14 14 C 1.52999 * 109.46832 * 264.49670 * 13 4 3 15 15 N 1.46500 * 109.46832 * 179.97438 * 14 13 4 16 16 C 1.34782 * 119.99880 * 180.02562 * 15 14 13 17 17 O 1.21584 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.47596 * 119.99706 * 180.02562 * 16 15 14 19 19 C 1.39763 * 120.08541 * 0.02562 * 18 16 15 20 20 C 1.37638 * 119.94150 * 179.97438 * 19 18 16 21 21 C 1.39324 * 120.06461 * 359.75950 * 20 19 18 22 22 C 1.39003 * 120.07829 * 0.48779 * 21 20 19 23 23 C 1.37657 * 120.15754 * 359.50677 * 22 21 20 24 24 C 1.50696 * 119.78081 * 179.75341 * 22 21 20 25 25 C 1.52905 * 109.49435 * 325.84173 * 24 22 21 26 26 C 1.50499 * 109.87074 * 48.52464 * 25 24 22 27 27 O 1.21273 * 119.59558 * 144.82343 * 26 25 24 28 28 N 1.34523 * 120.80280 * 324.79669 * 26 25 24 29 29 H 1.08997 * 109.47416 * 299.99290 * 1 2 3 30 30 H 1.08995 * 109.47338 * 60.00232 * 1 2 3 31 31 H 1.09008 * 109.47055 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47335 * 239.99895 * 2 1 3 33 33 H 1.09004 * 109.47276 * 120.00617 * 2 1 3 34 34 H 1.09006 * 109.46461 * 60.00203 * 3 2 1 35 35 H 1.08991 * 109.47143 * 300.00428 * 3 2 1 36 36 H 0.97004 * 120.00173 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46992 * 144.49687 * 13 4 3 38 38 H 1.08998 * 109.46971 * 24.49661 * 13 4 3 39 39 H 1.09003 * 109.47319 * 60.00216 * 14 13 4 40 40 H 1.08998 * 109.47335 * 299.99768 * 14 13 4 41 41 H 0.97003 * 120.00244 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.03059 * 359.94657 * 19 18 16 43 43 H 1.08004 * 119.95395 * 180.02562 * 20 19 18 44 44 H 1.07999 * 120.04480 * 180.26134 * 23 22 21 45 45 H 1.09003 * 109.46738 * 205.83275 * 24 22 21 46 46 H 1.09000 * 109.46417 * 85.84522 * 24 22 21 47 47 H 1.09003 * 109.40251 * 288.39946 * 25 24 22 48 48 H 1.09000 * 109.40725 * 168.65109 * 25 24 22 49 49 H 0.96998 * 119.71917 * 180.78318 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8218 0.8652 2.0222 7 6 5.3550 2.1849 1.3154 8 7 5.5887 3.1902 0.4985 9 14 6.5924 1.7572 2.6479 10 1 6.0976 0.5946 3.4281 11 1 7.8952 1.4157 2.0223 12 1 6.7678 2.9215 3.5528 13 6 4.2380 1.4424 -1.2678 14 6 4.6128 0.0065 -1.6401 15 7 5.3452 0.0063 -2.9088 16 6 5.7787 -1.1557 -3.4366 17 8 5.5623 -2.2037 -2.8594 18 6 6.5172 -1.1557 -4.7145 19 6 6.7683 0.0482 -5.3786 20 6 7.4576 0.0447 -6.5700 21 6 7.9094 -1.1568 -7.1115 22 6 7.6561 -2.3557 -6.4551 23 6 6.9674 -2.3595 -5.2633 24 6 8.1430 -3.6519 -7.0498 25 6 8.0827 -3.5680 -8.5753 26 6 8.7179 -2.2862 -9.0426 27 8 9.3410 -2.2710 -10.0830 28 7 8.6026 -1.1570 -8.3206 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9563 -0.8899 36 1 6.4036 3.7087 0.5882 37 1 5.1441 2.0392 -1.1638 38 1 3.6101 1.8685 -2.0503 39 1 3.7066 -0.5903 -1.7441 40 1 5.2407 -0.4196 -0.8576 41 1 5.5183 0.8425 -3.3691 42 1 6.4214 0.9803 -4.9576 43 1 7.6522 0.9749 -7.0831 44 1 6.7753 -3.2916 -4.7527 45 1 7.5100 -4.4699 -6.7056 46 1 9.1713 -3.8318 -6.7362 47 1 7.0420 -3.5954 -8.8986 48 1 8.6167 -4.4150 -9.0060 49 1 9.0087 -0.3370 -8.6423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267315392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:46 Heat of formation + Delta-G solvation = -62.933893 kcal Electronic energy + Delta-G solvation = -29460.992942 eV Core-core repulsion = 25386.728623 eV Total energy + Delta-G solvation = -4074.264320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.13241 -40.88487 -39.41727 -38.21136 -36.32316 -35.80054 -35.00107 -34.59023 -32.64707 -31.22624 -31.13742 -29.39944 -27.33344 -25.68705 -25.60496 -24.38320 -23.72287 -22.58589 -22.06383 -21.69104 -20.19681 -19.15123 -18.73512 -18.29992 -18.00523 -17.20405 -17.00598 -16.75068 -16.35124 -16.03391 -15.88881 -15.64283 -15.45933 -15.26192 -14.87792 -14.72255 -14.59316 -14.46695 -14.25847 -14.20666 -14.03099 -13.48348 -13.34940 -13.04792 -12.89721 -12.86519 -12.65779 -12.51435 -12.48741 -12.20896 -12.04900 -11.98755 -11.86026 -11.78551 -11.65912 -11.33363 -11.18112 -11.01688 -10.54207 -10.06381 -9.93304 -9.14475 -8.57854 -7.83237 -5.48812 -0.33647 0.27129 1.25670 1.42147 1.47526 1.56064 1.91097 1.94125 2.18168 2.50708 2.80150 3.22322 3.28279 3.59101 3.62678 3.70640 3.84717 3.95129 4.12605 4.21971 4.23618 4.27384 4.32458 4.40076 4.41155 4.56491 4.69347 4.75331 4.77639 4.85350 4.87547 4.88421 5.01062 5.02406 5.05086 5.13385 5.18731 5.24423 5.28085 5.32345 5.42034 5.45108 5.56558 5.63754 5.66728 5.70291 5.77845 6.03668 6.45804 6.60218 6.85535 7.15461 7.24263 7.83669 8.35701 9.10214 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.002256 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.179469 B =12410.181076 C =13369.262684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.267 4.267 6 H 0.050 0.950 7 C -0.026 4.026 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.287 1.287 13 C 0.142 3.858 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.550 3.450 17 O -0.589 6.589 18 C -0.167 4.167 19 C -0.052 4.052 20 C -0.149 4.149 21 C 0.181 3.819 22 C -0.133 4.133 23 C -0.030 4.030 24 C -0.075 4.075 25 C -0.134 4.134 26 C 0.520 3.480 27 O -0.567 6.567 28 N -0.654 5.654 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.047 0.953 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.029 0.971 41 H 0.410 0.590 42 H 0.150 0.850 43 H 0.165 0.835 44 H 0.137 0.863 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.119 0.881 48 H 0.125 0.875 49 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -8.079 -18.522 20.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.398 4.398 6 H 0.067 0.933 7 C -0.225 4.225 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.015 3.985 14 C -0.005 4.005 15 N -0.359 5.359 16 C 0.339 3.661 17 O -0.471 6.471 18 C -0.171 4.171 19 C -0.071 4.071 20 C -0.169 4.169 21 C 0.084 3.916 22 C -0.136 4.136 23 C -0.050 4.050 24 C -0.112 4.112 25 C -0.173 4.173 26 C 0.310 3.690 27 O -0.446 6.446 28 N -0.297 5.297 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.248 0.752 42 H 0.168 0.832 43 H 0.182 0.818 44 H 0.155 0.845 45 H 0.131 0.869 46 H 0.109 0.891 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 2.322 -8.828 -18.653 20.766 hybrid contribution 0.998 0.750 0.848 1.509 sum 3.320 -8.078 -17.804 19.831 Atomic orbital electron populations 1.21653 0.94277 1.01763 1.02005 1.22029 0.96421 0.98780 1.00256 1.21063 0.83302 0.94458 0.99152 1.43838 1.00856 1.85347 1.01686 1.19143 1.06599 1.21992 0.92045 0.93260 1.25717 1.02083 0.94814 0.99852 1.70060 1.26190 1.17817 1.41037 0.85549 0.79522 0.77734 0.79682 1.19918 1.21637 1.21348 1.20958 0.98755 0.92108 0.86697 1.21904 0.94242 1.00963 0.83381 1.45879 1.56641 1.09346 1.24082 1.18735 0.78613 0.83348 0.85398 1.90732 1.59632 1.32840 1.63927 1.19822 1.05547 0.95886 0.95891 1.21339 0.94885 0.97160 0.93735 1.21013 1.01064 0.97583 0.97238 1.17918 0.93287 0.94535 0.85905 1.19572 1.03214 0.95002 0.95774 1.20954 0.93034 0.97730 0.93275 1.20513 1.03599 0.94399 0.92647 1.21770 1.04351 0.94207 0.96979 1.21346 0.78599 0.86475 0.82542 1.90775 1.42418 1.86181 1.25177 1.43530 1.52568 1.13665 1.19953 0.92665 0.92019 0.92299 0.93501 0.94404 0.94357 0.93438 0.93716 0.90828 0.93214 0.93309 0.95265 0.75233 0.83219 0.81767 0.84521 0.86909 0.89103 0.86271 0.85712 0.74123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.01 16 2 C -0.14 -4.73 6.26 30.59 0.19 -4.54 16 3 C 0.15 5.84 5.71 86.38 0.49 6.33 16 4 N -0.60 -28.35 2.43 -702.01 -1.71 -30.05 16 5 C -0.27 -14.27 9.42 84.03 0.79 -13.48 16 6 H 0.05 2.70 7.92 -2.91 -0.02 2.68 16 7 C -0.03 -1.42 5.00 84.86 0.42 -0.99 16 8 N -0.91 -49.88 11.43 21.65 0.25 -49.63 16 9 Si 0.95 43.96 29.60 68.60 2.03 45.99 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.14 6.09 5.50 86.38 0.47 6.57 16 14 C 0.12 4.89 5.97 86.38 0.52 5.41 16 15 N -0.71 -22.83 5.51 -466.20 -2.57 -25.40 16 16 C 0.55 18.08 7.76 86.71 0.67 18.76 16 17 O -0.59 -24.19 16.34 -3.98 -0.07 -24.26 16 18 C -0.17 -4.01 5.88 -20.07 -0.12 -4.13 16 19 C -0.05 -0.91 9.53 22.50 0.21 -0.69 16 20 C -0.15 -2.00 9.90 22.39 0.22 -1.78 16 21 C 0.18 2.64 6.51 38.39 0.25 2.89 16 22 C -0.13 -2.09 5.65 -19.82 -0.11 -2.21 16 23 C -0.03 -0.63 9.22 22.50 0.21 -0.43 16 24 C -0.07 -0.78 6.00 29.82 0.18 -0.60 16 25 C -0.13 -1.36 6.08 29.75 0.18 -1.18 16 26 C 0.52 8.53 7.72 87.63 0.68 9.21 16 27 O -0.57 -13.69 17.91 -3.01 -0.05 -13.74 16 28 N -0.65 -8.81 5.34 -304.02 -1.62 -10.43 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.05 1.68 6.66 -2.38 -0.02 1.66 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.04 1.60 8.04 -2.38 -0.02 1.58 16 35 H 0.05 1.75 7.86 -2.39 -0.02 1.73 16 36 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.07 3.58 5.53 -2.39 -0.01 3.57 16 38 H 0.05 1.91 7.83 -2.39 -0.02 1.89 16 39 H 0.05 2.01 6.66 -2.39 -0.02 1.99 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 10.59 6.49 -92.71 -0.60 9.99 16 42 H 0.15 2.12 6.39 -2.91 -0.02 2.10 16 43 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 44 H 0.14 2.98 7.64 -2.91 -0.02 2.96 16 45 H 0.11 0.84 8.06 -2.39 -0.02 0.82 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.42 4.40 8.82 -92.71 -0.82 3.59 16 Total: -1.00 -72.10 401.28 1.81 -70.29 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.43 Total: 21.11 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.98 Total: 16.12 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -5.65 Total: -115.51 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.12 Total: -38.00 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.10 1.81 -70.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267315392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.354 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds