Wall clock time and date at job start Wed Apr 1 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47450 * 305.62201 * 3 2 1 5 5 C 1.53005 * 109.46848 * 65.62179 * 3 2 1 6 6 N 1.46501 * 109.46776 * 175.00152 * 5 3 2 7 7 C 1.34775 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00561 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99908 * 179.97438 * 7 6 5 10 10 H 1.09003 * 112.51051 * 309.67818 * 9 7 6 11 11 C 1.52884 * 113.16927 * 179.76887 * 9 7 6 12 12 C 1.51425 * 84.73488 * 244.77846 * 11 9 7 13 13 C 1.38948 * 145.52969 * 180.02562 * 12 11 9 14 14 C 1.37976 * 120.32494 * 179.97438 * 13 12 11 15 15 C 1.38238 * 120.17634 * 0.02562 * 14 13 12 16 16 C 1.38174 * 119.75036 * 359.97438 * 15 14 13 17 17 C 1.38244 * 120.12264 * 359.97438 * 16 15 14 18 18 N 1.46899 * 109.47170 * 185.61912 * 3 2 1 19 19 C 1.46898 * 111.00058 * 86.17918 * 18 3 2 20 20 C 1.50697 * 109.46988 * 176.17844 * 19 18 3 21 21 O 1.21293 * 120.00437 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99850 * 179.97438 * 20 19 18 23 23 C 1.37101 * 120.00138 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99582 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00093 * 179.72693 * 23 22 20 26 26 N 1.31413 * 119.99769 * 0.27302 * 25 23 22 27 27 Si 1.86800 * 119.99898 * 180.27924 * 25 23 22 28 28 H 1.48495 * 109.47273 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47210 * 119.99946 * 27 25 23 30 30 H 1.48504 * 109.46848 * 239.99919 * 27 25 23 31 31 H 1.09007 * 109.47049 * 54.29766 * 1 2 3 32 32 H 1.08995 * 109.47326 * 174.29389 * 1 2 3 33 33 H 1.08997 * 109.47434 * 294.30263 * 1 2 3 34 34 H 1.08995 * 109.46932 * 240.00257 * 2 1 3 35 35 H 1.09001 * 109.46647 * 119.99974 * 2 1 3 36 36 H 1.09008 * 109.46974 * 294.99461 * 5 3 2 37 37 H 1.08998 * 109.47455 * 54.99728 * 5 3 2 38 38 H 0.96999 * 119.99980 * 359.97438 * 6 5 3 39 39 H 1.09002 * 113.98674 * 358.72874 * 11 9 7 40 40 H 1.09006 * 113.98730 * 130.83224 * 11 9 7 41 41 H 1.08001 * 119.83852 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.91217 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.12591 * 179.97438 * 15 14 13 44 44 H 1.07995 * 119.94022 * 180.02562 * 16 15 14 45 45 H 1.00895 * 110.99926 * 210.13913 * 18 3 2 46 46 H 1.09002 * 109.46773 * 56.17816 * 19 18 3 47 47 H 1.08999 * 109.47095 * 296.17813 * 19 18 3 48 48 H 0.96999 * 120.00430 * 0.02562 * 22 20 19 49 49 H 0.97006 * 119.99619 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 1.6486 2.1218 1.3140 6 7 2.2380 3.4620 1.3652 7 6 2.0260 4.2508 2.4373 8 8 1.3477 3.8510 3.3597 9 6 2.6327 5.6293 2.4903 10 1 3.6996 5.6245 2.2672 11 6 2.2882 6.3892 3.7714 12 6 1.5515 7.3351 2.8464 13 6 0.7813 8.4886 2.7641 14 6 0.3335 8.9414 1.5401 15 6 0.6481 8.2492 0.3857 16 6 1.4136 7.1015 0.4615 17 6 1.8638 6.6474 1.6872 18 7 3.5027 1.4448 -0.1356 19 6 3.9005 1.3989 -1.5490 20 6 5.4007 1.4971 -1.6520 21 8 6.0726 1.5952 -0.6470 22 7 5.9960 1.4750 -2.8610 23 6 7.3609 1.5638 -2.9548 24 1 7.9591 1.6511 -2.0598 25 6 7.9750 1.5353 -4.2009 26 7 7.2471 1.4285 -5.2898 27 14 9.8352 1.6485 -4.3282 28 1 10.4186 1.7613 -2.9673 29 1 10.3610 0.4292 -4.9931 30 1 10.2048 2.8456 -5.1255 31 1 -0.3633 0.5998 -0.8346 32 1 -0.3634 -1.0225 -0.1022 33 1 -0.3634 0.4229 0.9366 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 0.5630 2.1998 1.3733 37 1 2.0168 1.5306 2.1524 38 1 2.7808 3.7817 0.6276 39 1 1.6384 5.8390 4.4519 40 1 3.1502 6.8359 4.2671 41 1 0.5320 9.0335 3.6627 42 1 -0.2644 9.8391 1.4839 43 1 0.2967 8.6042 -0.5719 44 1 1.6616 6.5585 -0.4386 45 1 3.9076 2.2440 0.3283 46 1 3.4442 2.2330 -2.0820 47 1 3.5667 0.4597 -1.9900 48 1 5.4588 1.3962 -3.6648 49 1 7.6758 1.4089 -6.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318568660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:51 Heat of formation + Delta-G solvation = -13.753315 kcal Electronic energy + Delta-G solvation = -29469.791316 eV Core-core repulsion = 25397.659626 eV Total energy + Delta-G solvation = -4072.131690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.30613 -39.40672 -38.45984 -37.28751 -35.48535 -34.19312 -33.91650 -32.63437 -31.25634 -31.08095 -28.92828 -27.77873 -26.40419 -25.25101 -24.01887 -23.59973 -22.33426 -21.20910 -20.47635 -19.84660 -19.31792 -18.00067 -17.66916 -17.00056 -16.62418 -16.06074 -15.70450 -15.50588 -15.26371 -14.92278 -14.67904 -14.52229 -14.45287 -13.98967 -13.71987 -13.53624 -13.50659 -13.31196 -13.12941 -12.82025 -12.50591 -12.42101 -12.30468 -12.17214 -11.97234 -11.69667 -11.59563 -11.40876 -11.25704 -11.19226 -11.09192 -10.82897 -10.61011 -10.37786 -10.26789 -10.13328 -9.56928 -9.24042 -9.09736 -8.83850 -8.50938 -8.19614 -8.01457 -6.46577 -3.87475 1.00255 1.10040 2.40144 2.95122 3.13033 3.24231 3.31261 3.48454 3.83489 3.84433 4.00130 4.11349 4.18550 4.23305 4.53718 4.67690 4.77116 4.82248 4.87232 4.98737 5.08798 5.14142 5.20573 5.26626 5.28812 5.32529 5.39724 5.43154 5.51977 5.59694 5.67101 5.69930 5.72213 5.81055 5.82915 5.88853 6.00313 6.09535 6.11786 6.15468 6.21683 6.22832 6.35082 6.41711 6.68502 7.11005 7.25265 7.51001 7.54039 8.00602 8.01286 8.55415 9.12939 9.48651 9.99444 10.71061 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.002516 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.977783 B =11124.456289 C =12921.655476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C 0.076 3.924 4 H 0.050 0.950 5 C 0.117 3.883 6 N -0.726 5.726 7 C 0.534 3.466 8 O -0.535 6.535 9 C -0.068 4.068 10 H 0.122 0.878 11 C -0.059 4.059 12 C -0.117 4.117 13 C -0.101 4.101 14 C -0.114 4.114 15 C -0.119 4.119 16 C -0.082 4.082 17 C -0.127 4.127 18 N -0.665 5.665 19 C 0.049 3.951 20 C 0.438 3.562 21 O -0.584 6.584 22 N -0.562 5.562 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.023 3.977 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.281 1.281 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.400 0.600 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.349 0.651 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.449 10.159 10.297 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.035 4.035 4 H 0.068 0.932 5 C -0.007 4.007 6 N -0.378 5.378 7 C 0.319 3.681 8 O -0.412 6.412 9 C -0.089 4.089 10 H 0.140 0.860 11 C -0.096 4.096 12 C -0.117 4.117 13 C -0.119 4.119 14 C -0.132 4.132 15 C -0.137 4.137 16 C -0.100 4.100 17 C -0.127 4.127 18 N -0.300 5.300 19 C -0.083 4.083 20 C 0.224 3.776 21 O -0.468 6.468 22 N -0.198 5.198 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.179 4.179 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.235 0.765 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.170 0.830 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.362 9.251 11.522 22.047 hybrid contribution 0.680 1.043 -1.638 2.058 sum -15.681 10.294 9.884 21.203 Atomic orbital electron populations 1.21846 0.95907 1.01827 1.01714 1.21480 0.94690 0.95197 1.03522 1.21876 0.89031 0.96871 0.95691 0.93236 1.21678 0.98479 0.81991 0.98512 1.46024 1.53840 1.16572 1.21407 1.20054 0.80282 0.85841 0.81897 1.90686 1.39117 1.74637 1.36755 1.21359 1.01150 0.90639 0.95721 0.85974 1.21746 0.99665 0.93053 0.95108 1.22353 0.97284 0.95193 0.96848 1.20542 0.97922 0.95576 0.97890 1.21002 1.00020 0.99935 0.92217 1.21029 0.98758 0.95219 0.98713 1.20250 0.97391 0.96321 0.96003 1.21225 0.99929 0.97343 0.94221 1.60117 1.06515 1.50031 1.13315 1.21768 0.95694 1.01625 0.89246 1.19790 0.88598 0.84758 0.84493 1.90532 1.65202 1.55342 1.35735 1.41870 1.07857 1.63718 1.06375 1.19755 0.81847 1.47123 0.94167 0.87844 1.25272 1.00607 0.97239 0.94796 1.69621 1.36207 1.50262 0.98112 0.85802 0.82223 0.77763 0.78586 1.19186 1.20702 1.20746 0.92845 0.92473 0.92636 0.91149 0.90892 0.90659 0.90240 0.76452 0.86958 0.88050 0.86310 0.85654 0.85356 0.86084 0.82977 0.93852 0.89387 0.77455 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.54 37.16 0.35 -1.02 16 2 C -0.11 -1.19 5.65 -26.73 -0.15 -1.35 16 3 C 0.08 0.87 2.27 -67.71 -0.15 0.72 16 4 H 0.05 0.54 7.72 -51.93 -0.40 0.14 16 5 C 0.12 1.34 4.95 -4.04 -0.02 1.32 16 6 N -0.73 -8.24 4.98 -60.29 -0.30 -8.54 16 7 C 0.53 6.67 7.33 -10.99 -0.08 6.59 16 8 O -0.54 -8.29 15.66 5.56 0.09 -8.20 16 9 C -0.07 -0.70 4.14 -96.58 -0.40 -1.10 16 10 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 11 C -0.06 -0.56 7.91 -27.59 -0.22 -0.78 16 12 C -0.12 -1.22 7.32 -107.59 -0.79 -2.01 16 13 C -0.10 -0.94 10.05 -39.41 -0.40 -1.33 16 14 C -0.11 -0.96 10.03 -39.68 -0.40 -1.36 16 15 C -0.12 -1.05 10.06 -39.60 -0.40 -1.45 16 16 C -0.08 -0.82 10.04 -39.60 -0.40 -1.21 16 17 C -0.13 -1.36 7.05 -104.55 -0.74 -2.10 16 18 N -0.66 -10.02 5.99 -107.99 -0.65 -10.67 16 19 C 0.05 0.82 6.01 -4.98 -0.03 0.79 16 20 C 0.44 9.94 7.81 -10.99 -0.09 9.86 16 21 O -0.58 -15.34 15.69 5.55 0.09 -15.26 16 22 N -0.56 -13.81 5.29 -10.96 -0.06 -13.87 16 23 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 24 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.06 13.05 55.50 0.72 -23.34 16 27 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.48 6.98 -51.93 -0.36 0.11 16 34 H 0.07 0.81 7.49 -51.93 -0.39 0.42 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.83 6.97 -51.92 -0.36 0.47 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.17 7.39 -40.82 -0.30 3.87 16 39 H 0.11 1.18 7.02 -51.93 -0.36 0.81 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.35 5.45 6.27 -39.29 -0.25 5.21 16 46 H 0.04 0.63 7.96 -51.93 -0.41 0.22 16 47 H 0.09 1.37 7.52 -51.93 -0.39 0.98 16 48 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 49 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -32.88 406.63 -10.43 -43.31 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -7.29 Total: 17.00 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -4.14 Total: -2.26 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.28 Total: -56.42 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.88 -10.43 -43.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318568660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.559 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds