Wall clock time and date at job start Wed Apr 1 2020 03:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47450 * 305.62201 * 3 2 1 5 5 C 1.53005 * 109.46848 * 65.62179 * 3 2 1 6 6 N 1.46501 * 109.46776 * 175.00152 * 5 3 2 7 7 C 1.34775 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00561 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99908 * 179.97438 * 7 6 5 10 10 H 1.09003 * 112.51051 * 309.67818 * 9 7 6 11 11 C 1.52884 * 113.16927 * 179.76887 * 9 7 6 12 12 C 1.51425 * 84.73488 * 244.77846 * 11 9 7 13 13 C 1.38948 * 145.52969 * 180.02562 * 12 11 9 14 14 C 1.37976 * 120.32494 * 179.97438 * 13 12 11 15 15 C 1.38238 * 120.17634 * 0.02562 * 14 13 12 16 16 C 1.38174 * 119.75036 * 359.97438 * 15 14 13 17 17 C 1.38244 * 120.12264 * 359.97438 * 16 15 14 18 18 N 1.46899 * 109.47170 * 185.61912 * 3 2 1 19 19 C 1.46898 * 111.00058 * 86.17918 * 18 3 2 20 20 C 1.50697 * 109.46988 * 176.17844 * 19 18 3 21 21 O 1.21293 * 120.00437 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99850 * 179.97438 * 20 19 18 23 23 C 1.37101 * 120.00138 * 180.02562 * 22 20 19 24 24 H 1.08002 * 119.99582 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00093 * 179.72693 * 23 22 20 26 26 N 1.31413 * 119.99769 * 0.27302 * 25 23 22 27 27 Si 1.86800 * 119.99898 * 180.27924 * 25 23 22 28 28 H 1.48495 * 109.47273 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47210 * 119.99946 * 27 25 23 30 30 H 1.48504 * 109.46848 * 239.99919 * 27 25 23 31 31 H 1.09007 * 109.47049 * 54.29766 * 1 2 3 32 32 H 1.08995 * 109.47326 * 174.29389 * 1 2 3 33 33 H 1.08997 * 109.47434 * 294.30263 * 1 2 3 34 34 H 1.08995 * 109.46932 * 240.00257 * 2 1 3 35 35 H 1.09001 * 109.46647 * 119.99974 * 2 1 3 36 36 H 1.09008 * 109.46974 * 294.99461 * 5 3 2 37 37 H 1.08998 * 109.47455 * 54.99728 * 5 3 2 38 38 H 0.96999 * 119.99980 * 359.97438 * 6 5 3 39 39 H 1.09002 * 113.98674 * 358.72874 * 11 9 7 40 40 H 1.09006 * 113.98730 * 130.83224 * 11 9 7 41 41 H 1.08001 * 119.83852 * 359.97438 * 13 12 11 42 42 H 1.08000 * 119.91217 * 180.02562 * 14 13 12 43 43 H 1.08001 * 120.12591 * 179.97438 * 15 14 13 44 44 H 1.07995 * 119.94022 * 180.02562 * 16 15 14 45 45 H 1.00895 * 110.99926 * 210.13913 * 18 3 2 46 46 H 1.09002 * 109.46773 * 56.17816 * 19 18 3 47 47 H 1.08999 * 109.47095 * 296.17813 * 19 18 3 48 48 H 0.96999 * 120.00430 * 0.02562 * 22 20 19 49 49 H 0.97006 * 119.99619 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 1.6486 2.1218 1.3140 6 7 2.2380 3.4620 1.3652 7 6 2.0260 4.2508 2.4373 8 8 1.3477 3.8510 3.3597 9 6 2.6327 5.6293 2.4903 10 1 3.6996 5.6245 2.2672 11 6 2.2882 6.3892 3.7714 12 6 1.5515 7.3351 2.8464 13 6 0.7813 8.4886 2.7641 14 6 0.3335 8.9414 1.5401 15 6 0.6481 8.2492 0.3857 16 6 1.4136 7.1015 0.4615 17 6 1.8638 6.6474 1.6872 18 7 3.5027 1.4448 -0.1356 19 6 3.9005 1.3989 -1.5490 20 6 5.4007 1.4971 -1.6520 21 8 6.0726 1.5952 -0.6470 22 7 5.9960 1.4750 -2.8610 23 6 7.3609 1.5638 -2.9548 24 1 7.9591 1.6511 -2.0598 25 6 7.9750 1.5353 -4.2009 26 7 7.2471 1.4285 -5.2898 27 14 9.8352 1.6485 -4.3282 28 1 10.4186 1.7613 -2.9673 29 1 10.3610 0.4292 -4.9931 30 1 10.2048 2.8456 -5.1255 31 1 -0.3633 0.5998 -0.8346 32 1 -0.3634 -1.0225 -0.1022 33 1 -0.3634 0.4229 0.9366 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 0.5630 2.1998 1.3733 37 1 2.0168 1.5306 2.1524 38 1 2.7808 3.7817 0.6276 39 1 1.6384 5.8390 4.4519 40 1 3.1502 6.8359 4.2671 41 1 0.5320 9.0335 3.6627 42 1 -0.2644 9.8391 1.4839 43 1 0.2967 8.6042 -0.5719 44 1 1.6616 6.5585 -0.4386 45 1 3.9076 2.2440 0.3283 46 1 3.4442 2.2330 -2.0820 47 1 3.5667 0.4597 -1.9900 48 1 5.4588 1.3962 -3.6648 49 1 7.6758 1.4089 -6.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318568660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:50 Heat of formation + Delta-G solvation = -35.717856 kcal Electronic energy + Delta-G solvation = -29470.743770 eV Core-core repulsion = 25397.659626 eV Total energy + Delta-G solvation = -4073.084144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11438 -40.47270 -39.98262 -38.49176 -36.23698 -35.99329 -35.09098 -33.77136 -33.21178 -31.77243 -29.93085 -28.64446 -27.75427 -26.37066 -25.40098 -24.56520 -23.09344 -22.01357 -21.41507 -21.15740 -20.62537 -19.92041 -18.65797 -17.90804 -17.73097 -17.26335 -16.83706 -16.70189 -16.37463 -16.22167 -15.93845 -15.72974 -15.54908 -15.27953 -15.06942 -14.58186 -14.50363 -14.11762 -13.96391 -13.81456 -13.69623 -13.54282 -13.43647 -13.29699 -13.03472 -12.92346 -12.91154 -12.64107 -12.44833 -12.38405 -12.11642 -12.04859 -11.96351 -11.59772 -11.52414 -11.48838 -11.05557 -10.34773 -10.22519 -10.01524 -9.80811 -9.56598 -9.40153 -8.47082 -5.95344 0.29174 0.39631 1.36400 1.42476 1.43662 1.56046 2.03027 2.05554 2.28705 2.77765 2.84784 3.08564 3.20744 3.37191 3.43963 3.44990 3.62492 3.78871 4.07913 4.16570 4.18014 4.19021 4.24432 4.29436 4.41174 4.46174 4.58311 4.59533 4.61274 4.65772 4.68708 4.78907 4.79521 4.91661 4.94352 4.98203 5.11498 5.22749 5.26719 5.31097 5.41488 5.43133 5.48033 5.54186 5.69569 5.86959 6.02007 6.07666 6.31401 6.33254 6.59595 7.04484 7.12736 7.56109 8.11011 8.70383 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.002516 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.977783 B =11124.456289 C =12921.655476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.067 0.933 5 C 0.122 3.878 6 N -0.720 5.720 7 C 0.531 3.469 8 O -0.570 6.570 9 C -0.067 4.067 10 H 0.134 0.866 11 C -0.056 4.056 12 C -0.135 4.135 13 C -0.112 4.112 14 C -0.115 4.115 15 C -0.124 4.124 16 C -0.097 4.097 17 C -0.146 4.146 18 N -0.679 5.679 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.623 6.623 22 N -0.571 5.571 23 C -0.331 4.331 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.274 1.274 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.406 0.594 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.128 0.872 45 H 0.344 0.656 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.412 11.114 9.379 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.026 4.026 4 H 0.085 0.915 5 C -0.001 4.001 6 N -0.372 5.372 7 C 0.318 3.682 8 O -0.449 6.449 9 C -0.088 4.088 10 H 0.152 0.848 11 C -0.092 4.092 12 C -0.135 4.135 13 C -0.130 4.130 14 C -0.133 4.133 15 C -0.142 4.142 16 C -0.115 4.115 17 C -0.146 4.146 18 N -0.314 5.314 19 C -0.068 4.068 20 C 0.225 3.775 21 O -0.510 6.510 22 N -0.208 5.208 23 C -0.461 4.461 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.198 1.198 29 H -0.198 1.198 30 H -0.196 1.196 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.242 0.758 39 H 0.117 0.883 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.146 0.854 45 H 0.165 0.835 46 H 0.090 0.910 47 H 0.122 0.878 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.347 10.201 10.571 22.731 hybrid contribution 0.921 0.756 -1.326 1.782 sum -16.426 10.957 9.245 21.803 Atomic orbital electron populations 1.21799 0.94145 1.02602 1.02172 1.21473 0.96170 0.94346 1.02797 1.21902 0.86840 0.97667 0.96157 0.91543 1.21612 0.98807 0.81814 0.97907 1.46010 1.53483 1.16393 1.21320 1.20448 0.79719 0.86550 0.81443 1.90664 1.40775 1.75513 1.37966 1.21390 1.01605 0.89320 0.96466 0.84831 1.21745 1.00140 0.92721 0.94630 1.22557 0.98031 0.95953 0.96939 1.20864 0.97590 0.95394 0.99117 1.21378 0.99613 1.00580 0.91730 1.21376 0.98139 0.94717 0.99967 1.20510 0.97840 0.97075 0.96065 1.21344 1.00754 0.97667 0.94840 1.60124 1.08764 1.50157 1.12331 1.21632 0.90877 1.03563 0.90722 1.20845 0.91136 0.82350 0.83204 1.90504 1.67039 1.56505 1.36925 1.41924 1.07182 1.64486 1.07255 1.19680 0.83261 1.49303 0.93854 0.90365 1.26004 1.04671 0.96345 0.94144 1.69673 1.37735 1.50136 0.98483 0.84905 0.77143 0.78296 0.78224 1.19833 1.19759 1.19560 0.92018 0.91675 0.92441 0.91599 0.91927 0.89866 0.91767 0.75797 0.88271 0.86038 0.84620 0.83040 0.83175 0.85359 0.83527 0.91021 0.87791 0.76935 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.54 71.98 0.69 -1.66 16 2 C -0.11 -2.21 5.65 30.60 0.17 -2.03 16 3 C 0.08 1.81 2.27 44.92 0.10 1.91 16 4 H 0.07 1.26 7.72 -2.39 -0.02 1.24 16 5 C 0.12 2.71 4.95 86.38 0.43 3.14 16 6 N -0.72 -16.07 4.98 -463.04 -2.31 -18.37 16 7 C 0.53 13.38 7.33 87.66 0.64 14.02 16 8 O -0.57 -18.00 15.66 -3.03 -0.05 -18.05 16 9 C -0.07 -1.38 4.14 -14.66 -0.06 -1.44 16 10 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 11 C -0.06 -1.05 7.91 30.04 0.24 -0.81 16 12 C -0.13 -2.74 7.32 -21.79 -0.16 -2.90 16 13 C -0.11 -1.93 10.05 22.38 0.22 -1.70 16 14 C -0.12 -1.72 10.03 22.21 0.22 -1.50 16 15 C -0.12 -1.97 10.06 22.25 0.22 -1.75 16 16 C -0.10 -1.84 10.04 22.26 0.22 -1.62 16 17 C -0.15 -3.07 7.05 -19.82 -0.14 -3.21 16 18 N -0.68 -19.82 5.99 -495.57 -2.97 -22.79 16 19 C 0.06 2.03 6.01 85.56 0.51 2.55 16 20 C 0.44 19.87 7.81 87.66 0.68 20.56 16 21 O -0.62 -33.38 15.69 -3.07 -0.05 -33.43 16 22 N -0.57 -28.30 5.29 -306.98 -1.62 -29.92 16 23 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 24 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 26 N -0.92 -48.57 13.05 21.66 0.28 -48.28 16 27 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.88 6.98 -2.39 -0.02 0.87 16 34 H 0.07 1.40 7.49 -2.39 -0.02 1.38 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.75 6.97 -2.38 -0.02 1.73 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 8.19 7.39 -92.71 -0.69 7.51 16 39 H 0.10 2.14 7.02 -2.39 -0.02 2.13 16 40 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 43 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 44 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.34 10.62 6.27 -89.70 -0.56 10.05 16 46 H 0.07 1.90 7.96 -2.39 -0.02 1.88 16 47 H 0.10 3.01 7.52 -2.39 -0.02 3.00 16 48 H 0.40 18.61 7.90 -92.71 -0.73 17.87 16 49 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -71.46 406.63 -0.38 -71.85 By element: Atomic # 1 Polarization: 49.90 SS G_CDS: -0.98 Total: 48.92 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 5.28 Total: 5.82 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -6.62 Total: -119.37 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.10 Total: -51.48 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.46 -0.38 -71.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318568660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.130 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds