Wall clock time and date at job start Wed Apr 1 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47301 * 2 1 4 4 N 1.46504 * 109.47079 * 120.00199 * 2 1 3 5 5 C 1.46496 * 120.00000 * 307.37929 * 4 2 1 6 6 C 1.50701 * 109.47069 * 89.99933 * 5 4 2 7 7 C 1.38227 * 119.61687 * 95.02596 * 6 5 4 8 8 C 1.38637 * 119.15752 * 179.97438 * 7 6 5 9 9 C 1.38667 * 118.42231 * 359.97438 * 8 7 6 10 10 C 1.38184 * 119.16335 * 0.02562 * 9 8 7 11 11 N 1.31858 * 119.62156 * 274.99705 * 6 5 4 12 12 C 1.34772 * 119.99909 * 127.37684 * 4 2 1 13 13 O 1.21351 * 120.00096 * 189.14461 * 12 4 2 14 14 C 1.49454 * 120.00085 * 9.15050 * 12 4 2 15 15 O 1.21346 * 120.00081 * 9.19504 * 14 12 4 16 16 N 1.34780 * 119.99586 * 189.19662 * 14 12 4 17 17 C 1.46502 * 119.99389 * 185.05333 * 16 14 12 18 18 C 1.52997 * 109.46933 * 184.97819 * 17 16 14 19 19 C 1.50702 * 115.55103 * 65.13846 * 18 17 16 20 20 H 1.07999 * 120.00506 * 273.51751 * 19 18 17 21 21 C 1.37880 * 119.99786 * 93.50908 * 19 18 17 22 22 N 1.31507 * 120.00169 * 4.56711 * 21 19 18 23 23 Si 1.86800 * 120.00142 * 184.56569 * 21 19 18 24 24 H 1.48508 * 109.47061 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47307 * 119.99988 * 23 21 19 26 26 H 1.48497 * 109.47459 * 240.00233 * 23 21 19 27 27 C 1.52998 * 117.50213 * 279.47473 * 18 17 16 28 28 C 1.53002 * 117.50362 * 210.80921 * 18 17 16 29 29 H 1.09006 * 109.47302 * 308.03848 * 1 2 3 30 30 H 1.09005 * 109.47255 * 68.03999 * 1 2 3 31 31 H 1.09001 * 109.47655 * 188.04042 * 1 2 3 32 32 H 1.09008 * 109.46827 * 239.99747 * 2 1 3 33 33 H 1.09001 * 109.47591 * 174.60639 * 3 2 1 34 34 H 1.09000 * 109.47356 * 294.60464 * 3 2 1 35 35 H 1.09003 * 109.47386 * 54.60211 * 3 2 1 36 36 H 1.09006 * 109.46964 * 330.00244 * 5 4 2 37 37 H 1.08996 * 109.47120 * 210.00098 * 5 4 2 38 38 H 1.07998 * 120.41971 * 359.95414 * 7 6 5 39 39 H 1.07997 * 120.78321 * 180.02562 * 8 7 6 40 40 H 1.07998 * 120.41388 * 179.97438 * 9 8 7 41 41 H 1.08002 * 119.61339 * 180.27274 * 10 9 8 42 42 H 0.96995 * 120.00571 * 5.05526 * 16 14 12 43 43 H 1.08994 * 109.47212 * 304.97852 * 17 16 14 44 44 H 1.09000 * 109.47352 * 64.98181 * 17 16 14 45 45 H 0.97000 * 120.00533 * 185.00131 * 22 21 19 46 46 H 1.08994 * 117.49857 * 359.97438 * 27 18 17 47 47 H 1.08995 * 117.50264 * 145.01940 * 27 18 17 48 48 H 1.08997 * 117.50082 * 214.98351 * 28 18 17 49 49 H 1.09002 * 117.49155 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5363 -0.2913 2.5207 6 6 0.3066 -1.0895 2.8694 7 6 0.4309 -2.2412 3.6236 8 6 -0.7067 -2.9679 3.9393 9 6 -1.9323 -2.5067 3.4832 10 6 -1.9787 -1.3465 2.7339 11 7 -0.8756 -0.6809 2.4522 12 6 2.9110 -1.6935 1.0780 13 8 3.1903 -2.3740 2.0432 14 6 3.5569 -1.9674 -0.2416 15 8 3.4089 -1.1910 -1.1623 16 7 4.3038 -3.0768 -0.4089 17 6 5.0269 -3.2903 -1.6649 18 6 5.6893 -4.6693 -1.6440 19 6 4.7451 -5.8435 -1.6120 20 1 4.3707 -6.2099 -0.6676 21 6 4.3591 -6.4498 -2.7886 22 7 4.8833 -6.0625 -3.9308 23 14 3.0914 -7.8215 -2.7603 24 1 2.6591 -8.0673 -1.3610 25 1 1.9168 -7.4270 -3.5787 26 1 3.6900 -9.0605 -3.3187 27 6 7.0124 -4.8062 -0.8880 28 6 6.9982 -4.8363 -2.4184 29 1 -0.3634 0.6333 0.8094 30 1 -0.3634 0.3843 -0.9531 31 1 -0.3634 -1.0175 0.1437 32 1 1.8933 -0.5139 -0.8900 33 1 3.1257 1.4440 0.0966 34 1 1.7578 1.9276 -0.9343 35 1 1.5999 1.9834 0.8377 36 1 1.2901 0.7706 2.5127 37 1 2.3133 -0.4786 3.2618 38 1 1.4019 -2.5710 3.9622 39 1 -0.6400 -3.8713 4.5273 40 1 -2.8390 -3.0478 3.7100 41 1 -2.9298 -0.9783 2.3786 42 1 4.3625 -3.7338 0.3023 43 1 4.3287 -3.2353 -2.5000 44 1 5.7914 -2.5218 -1.7793 45 1 4.5600 -6.4375 -4.7649 46 1 7.4112 -3.9137 -0.4059 47 1 7.2001 -5.7455 -0.3679 48 1 7.1765 -5.7954 -2.9045 49 1 7.3872 -3.9637 -2.9432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347563861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:05 Heat of formation + Delta-G solvation = 12.171671 kcal Electronic energy + Delta-G solvation = -30992.297935 eV Core-core repulsion = 26921.290437 eV Total energy + Delta-G solvation = -4071.007498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94430 -40.03422 -38.26918 -37.00769 -36.55171 -33.48594 -32.86821 -32.56738 -31.94475 -30.99319 -27.84719 -27.02135 -26.69867 -25.39738 -23.64542 -23.36902 -22.31828 -21.26337 -20.94098 -19.79911 -19.08645 -17.49234 -17.16228 -16.69647 -16.29858 -15.98275 -15.91923 -15.37445 -15.26468 -14.96566 -14.70031 -14.29254 -14.19529 -13.82169 -13.70185 -13.45520 -13.24787 -13.12597 -12.90620 -12.73262 -12.34002 -12.13260 -11.98878 -11.89743 -11.82350 -11.56375 -11.35545 -11.14421 -11.03250 -10.92978 -10.56213 -10.47307 -10.21654 -9.98114 -9.57003 -9.52365 -9.32135 -9.17729 -8.85983 -8.79442 -8.50495 -8.40885 -8.15638 -6.10896 -4.20128 0.89117 1.14343 1.72847 2.60712 3.23743 3.32960 3.36228 3.50077 3.63964 3.87662 4.10783 4.34185 4.54148 4.69580 4.78469 4.92683 4.97093 5.03744 5.15135 5.21242 5.25859 5.34789 5.36138 5.49454 5.51170 5.62526 5.73692 5.79879 5.94898 5.96451 5.98870 6.05966 6.14272 6.25723 6.28023 6.36509 6.40360 6.44627 6.49331 6.59353 6.66003 6.74807 7.04169 7.11116 7.20301 7.32914 7.56889 7.74610 7.78673 7.81860 8.10090 8.29985 8.47846 8.82242 9.47331 10.95913 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.003288 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.574553 B = 8514.103184 C = 9597.840758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.091 3.909 3 C -0.150 4.150 4 N -0.574 5.574 5 C 0.165 3.835 6 C 0.106 3.894 7 C -0.144 4.144 8 C -0.079 4.079 9 C -0.172 4.172 10 C 0.091 3.909 11 N -0.465 5.465 12 C 0.509 3.491 13 O -0.520 6.520 14 C 0.496 3.504 15 O -0.526 6.526 16 N -0.664 5.664 17 C 0.159 3.841 18 C 0.015 3.985 19 C -0.497 4.497 20 H 0.061 0.939 21 C 0.074 3.926 22 N -0.875 5.875 23 Si 0.887 3.113 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.213 4.213 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.147 0.853 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.154 0.846 42 H 0.412 0.588 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.261 0.739 46 H 0.064 0.936 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 11.904 12.916 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 C -0.208 4.208 4 N -0.308 5.308 5 C 0.041 3.959 6 C -0.032 4.032 7 C -0.164 4.164 8 C -0.105 4.105 9 C -0.192 4.192 10 C -0.066 4.066 11 N -0.175 5.175 12 C 0.292 3.708 13 O -0.396 6.396 14 C 0.276 3.724 15 O -0.406 6.406 16 N -0.313 5.313 17 C 0.036 3.964 18 C 0.014 3.986 19 C -0.534 4.534 20 H 0.079 0.921 21 C -0.130 4.130 22 N -0.512 5.512 23 Si 0.715 3.285 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.250 4.250 28 C -0.169 4.169 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.163 0.837 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.171 0.829 42 H 0.248 0.752 43 H 0.093 0.907 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.112 0.888 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.994 12.756 12.065 20.203 hybrid contribution -0.849 -1.926 0.712 2.222 sum -10.843 10.829 12.777 19.952 Atomic orbital electron populations 1.22300 0.94300 1.02580 1.02241 1.22390 0.94797 0.94556 0.89281 1.22019 1.01472 0.95574 1.01723 1.47926 1.41132 1.34303 1.07434 1.20287 0.91994 0.98421 0.85162 1.21537 0.93492 0.94148 0.94050 1.22139 1.00172 0.95312 0.98768 1.21630 0.92398 0.99057 0.97453 1.22148 0.98788 0.98301 0.99943 1.22721 0.96780 0.92158 0.94984 1.67581 0.98284 1.32697 1.18911 1.20512 0.80000 0.80509 0.89770 1.90709 1.62309 1.46548 1.40014 1.19925 0.81196 0.83322 0.87914 1.90479 1.60324 1.47442 1.42371 1.45895 1.45394 1.20172 1.19817 1.21266 0.94453 0.96656 0.84003 1.19056 0.86870 0.92178 1.00493 1.20398 1.27480 1.12647 0.92893 0.92133 1.24965 0.95829 0.96499 0.95694 1.70009 1.39936 1.43756 0.97453 0.86612 0.81553 0.82081 0.78260 1.19686 1.20923 1.20951 1.23088 1.05866 1.00415 0.95642 1.22452 1.01674 1.01570 0.91216 0.90316 0.92430 0.93162 0.83689 0.92351 0.91528 0.93149 0.88402 0.88409 0.84114 0.84867 0.85010 0.82889 0.75154 0.90657 0.93673 0.92921 0.91743 0.90246 0.88773 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 7.54 37.16 0.28 -1.62 16 2 C 0.09 1.21 2.71 -67.93 -0.18 1.03 16 3 C -0.15 -1.68 9.21 37.15 0.34 -1.34 16 4 N -0.57 -7.92 2.38 -167.97 -0.40 -8.32 16 5 C 0.16 1.89 5.00 -5.20 -0.03 1.87 16 6 C 0.11 1.28 5.94 -82.58 -0.49 0.79 16 7 C -0.14 -1.68 9.55 -39.44 -0.38 -2.05 16 8 C -0.08 -0.79 10.18 -39.28 -0.40 -1.19 16 9 C -0.17 -1.56 10.11 -39.44 -0.40 -1.96 16 10 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 11 N -0.47 -5.39 6.58 -9.47 -0.06 -5.45 16 12 C 0.51 8.36 7.69 -11.59 -0.09 8.27 16 13 O -0.52 -9.00 15.68 5.50 0.09 -8.92 16 14 C 0.50 9.13 7.67 -11.58 -0.09 9.04 16 15 O -0.53 -10.19 13.21 5.50 0.07 -10.12 16 16 N -0.66 -12.92 5.44 -60.73 -0.33 -13.25 16 17 C 0.16 3.41 5.53 -4.04 -0.02 3.39 16 18 C 0.01 0.34 1.60 -155.66 -0.25 0.09 16 19 C -0.50 -12.80 8.76 -34.44 -0.30 -13.10 16 20 H 0.06 1.57 7.82 -52.49 -0.41 1.15 16 21 C 0.07 1.95 5.41 -17.82 -0.10 1.86 16 22 N -0.88 -23.86 11.91 55.43 0.66 -23.20 16 23 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.21 -4.42 9.96 -26.69 -0.27 -4.68 16 28 C -0.13 -2.96 8.85 -26.69 -0.24 -3.20 16 29 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 32 H 0.15 2.34 4.37 -54.50 -0.24 2.10 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.49 7.15 -51.93 -0.37 0.11 16 36 H 0.10 0.96 6.90 -51.93 -0.36 0.60 16 37 H 0.10 1.07 7.47 -51.93 -0.39 0.68 16 38 H 0.14 1.66 7.69 -52.49 -0.40 1.26 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.41 7.94 7.99 -40.82 -0.33 7.61 16 43 H 0.08 1.81 8.10 -51.93 -0.42 1.39 16 44 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 45 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 48 H 0.09 2.33 7.63 -51.93 -0.40 1.93 16 49 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -28.69 401.03 -9.13 -37.82 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -7.38 Total: 11.86 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.80 Total: -2.12 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.13 Total: -50.22 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: 0.16 Total: -19.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.69 -9.13 -37.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347563861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.987 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds