Wall clock time and date at job start Wed Apr 1 2020 03:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47301 * 2 1 4 4 N 1.46504 * 109.47079 * 120.00199 * 2 1 3 5 5 C 1.46496 * 120.00000 * 307.37929 * 4 2 1 6 6 C 1.50701 * 109.47069 * 89.99933 * 5 4 2 7 7 C 1.38227 * 119.61687 * 95.02596 * 6 5 4 8 8 C 1.38637 * 119.15752 * 179.97438 * 7 6 5 9 9 C 1.38667 * 118.42231 * 359.97438 * 8 7 6 10 10 C 1.38184 * 119.16335 * 0.02562 * 9 8 7 11 11 N 1.31858 * 119.62156 * 274.99705 * 6 5 4 12 12 C 1.34772 * 119.99909 * 127.37684 * 4 2 1 13 13 O 1.21351 * 120.00096 * 189.14461 * 12 4 2 14 14 C 1.49454 * 120.00085 * 9.15050 * 12 4 2 15 15 O 1.21346 * 120.00081 * 9.19504 * 14 12 4 16 16 N 1.34780 * 119.99586 * 189.19662 * 14 12 4 17 17 C 1.46502 * 119.99389 * 185.05333 * 16 14 12 18 18 C 1.52997 * 109.46933 * 184.97819 * 17 16 14 19 19 C 1.50702 * 115.55103 * 65.13846 * 18 17 16 20 20 H 1.07999 * 120.00506 * 273.51751 * 19 18 17 21 21 C 1.37880 * 119.99786 * 93.50908 * 19 18 17 22 22 N 1.31507 * 120.00169 * 4.56711 * 21 19 18 23 23 Si 1.86800 * 120.00142 * 184.56569 * 21 19 18 24 24 H 1.48508 * 109.47061 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47307 * 119.99988 * 23 21 19 26 26 H 1.48497 * 109.47459 * 240.00233 * 23 21 19 27 27 C 1.52998 * 117.50213 * 279.47473 * 18 17 16 28 28 C 1.53002 * 117.50362 * 210.80921 * 18 17 16 29 29 H 1.09006 * 109.47302 * 308.03848 * 1 2 3 30 30 H 1.09005 * 109.47255 * 68.03999 * 1 2 3 31 31 H 1.09001 * 109.47655 * 188.04042 * 1 2 3 32 32 H 1.09008 * 109.46827 * 239.99747 * 2 1 3 33 33 H 1.09001 * 109.47591 * 174.60639 * 3 2 1 34 34 H 1.09000 * 109.47356 * 294.60464 * 3 2 1 35 35 H 1.09003 * 109.47386 * 54.60211 * 3 2 1 36 36 H 1.09006 * 109.46964 * 330.00244 * 5 4 2 37 37 H 1.08996 * 109.47120 * 210.00098 * 5 4 2 38 38 H 1.07998 * 120.41971 * 359.95414 * 7 6 5 39 39 H 1.07997 * 120.78321 * 180.02562 * 8 7 6 40 40 H 1.07998 * 120.41388 * 179.97438 * 9 8 7 41 41 H 1.08002 * 119.61339 * 180.27274 * 10 9 8 42 42 H 0.96995 * 120.00571 * 5.05526 * 16 14 12 43 43 H 1.08994 * 109.47212 * 304.97852 * 17 16 14 44 44 H 1.09000 * 109.47352 * 64.98181 * 17 16 14 45 45 H 0.97000 * 120.00533 * 185.00131 * 22 21 19 46 46 H 1.08994 * 117.49857 * 359.97438 * 27 18 17 47 47 H 1.08995 * 117.50264 * 145.01940 * 27 18 17 48 48 H 1.08997 * 117.50082 * 214.98351 * 28 18 17 49 49 H 1.09002 * 117.49155 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.5363 -0.2913 2.5207 6 6 0.3066 -1.0895 2.8694 7 6 0.4309 -2.2412 3.6236 8 6 -0.7067 -2.9679 3.9393 9 6 -1.9323 -2.5067 3.4832 10 6 -1.9787 -1.3465 2.7339 11 7 -0.8756 -0.6809 2.4522 12 6 2.9110 -1.6935 1.0780 13 8 3.1903 -2.3740 2.0432 14 6 3.5569 -1.9674 -0.2416 15 8 3.4089 -1.1910 -1.1623 16 7 4.3038 -3.0768 -0.4089 17 6 5.0269 -3.2903 -1.6649 18 6 5.6893 -4.6693 -1.6440 19 6 4.7451 -5.8435 -1.6120 20 1 4.3707 -6.2099 -0.6676 21 6 4.3591 -6.4498 -2.7886 22 7 4.8833 -6.0625 -3.9308 23 14 3.0914 -7.8215 -2.7603 24 1 2.6591 -8.0673 -1.3610 25 1 1.9168 -7.4270 -3.5787 26 1 3.6900 -9.0605 -3.3187 27 6 7.0124 -4.8062 -0.8880 28 6 6.9982 -4.8363 -2.4184 29 1 -0.3634 0.6333 0.8094 30 1 -0.3634 0.3843 -0.9531 31 1 -0.3634 -1.0175 0.1437 32 1 1.8933 -0.5139 -0.8900 33 1 3.1257 1.4440 0.0966 34 1 1.7578 1.9276 -0.9343 35 1 1.5999 1.9834 0.8377 36 1 1.2901 0.7706 2.5127 37 1 2.3133 -0.4786 3.2618 38 1 1.4019 -2.5710 3.9622 39 1 -0.6400 -3.8713 4.5273 40 1 -2.8390 -3.0478 3.7100 41 1 -2.9298 -0.9783 2.3786 42 1 4.3625 -3.7338 0.3023 43 1 4.3287 -3.2353 -2.5000 44 1 5.7914 -2.5218 -1.7793 45 1 4.5600 -6.4375 -4.7649 46 1 7.4112 -3.9137 -0.4059 47 1 7.2001 -5.7455 -0.3679 48 1 7.1765 -5.7954 -2.9045 49 1 7.3872 -3.9637 -2.9432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347563861.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:04 Heat of formation + Delta-G solvation = -3.343086 kcal Electronic energy + Delta-G solvation = -30992.970705 eV Core-core repulsion = 26921.290437 eV Total energy + Delta-G solvation = -4071.680269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.12013 -41.02377 -39.66311 -38.55869 -37.88551 -35.07069 -33.92582 -33.75302 -33.38120 -31.98797 -29.11017 -28.13280 -27.97079 -27.27552 -24.65993 -24.40762 -23.26213 -22.90811 -22.21576 -21.44174 -20.60572 -18.80964 -18.14722 -17.93657 -17.85122 -17.12920 -16.93339 -16.67772 -16.61128 -16.40198 -16.16969 -15.72028 -15.50207 -15.09970 -14.82269 -14.60013 -14.46304 -14.23597 -14.05453 -13.94513 -13.74937 -13.42043 -13.27876 -13.13258 -12.94773 -12.85911 -12.78749 -12.68008 -12.46839 -12.38590 -12.14206 -11.99419 -11.67752 -11.35851 -11.05279 -10.77720 -10.48844 -10.39307 -10.35161 -10.17371 -10.02871 -9.84170 -9.77835 -8.12370 -6.25353 0.08378 0.34682 0.37059 1.36412 1.37432 1.41408 1.50105 2.11572 2.39395 2.46718 2.93686 3.14407 3.27835 3.33649 3.58486 3.76082 3.99828 4.03095 4.15283 4.20773 4.23812 4.27314 4.41247 4.47827 4.50187 4.51999 4.61604 4.67802 4.69898 4.77915 4.84987 4.86481 4.90727 5.03135 5.04072 5.09627 5.22844 5.26116 5.30202 5.31508 5.33387 5.46090 5.54640 5.58239 5.72732 5.76919 5.80442 6.01928 6.32375 6.35161 6.72535 6.81464 6.98955 7.01822 7.43718 8.93952 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.003288 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.574553 B = 8514.103184 C = 9597.840758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.088 3.912 3 C -0.143 4.143 4 N -0.564 5.564 5 C 0.164 3.836 6 C 0.089 3.911 7 C -0.162 4.162 8 C -0.088 4.088 9 C -0.167 4.167 10 C 0.082 3.918 11 N -0.477 5.477 12 C 0.510 3.490 13 O -0.533 6.533 14 C 0.494 3.506 15 O -0.537 6.537 16 N -0.668 5.668 17 C 0.175 3.825 18 C -0.007 4.007 19 C -0.505 4.505 20 H 0.054 0.946 21 C 0.030 3.970 22 N -0.901 5.901 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.285 1.285 26 H -0.281 1.281 27 C -0.184 4.184 28 C -0.138 4.138 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.118 0.882 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.162 0.838 41 H 0.180 0.820 42 H 0.413 0.587 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.260 0.740 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.633 12.811 14.405 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 C -0.200 4.200 4 N -0.296 5.296 5 C 0.042 3.958 6 C -0.049 4.049 7 C -0.182 4.182 8 C -0.114 4.114 9 C -0.186 4.186 10 C -0.076 4.076 11 N -0.187 5.187 12 C 0.292 3.708 13 O -0.410 6.410 14 C 0.275 3.725 15 O -0.417 6.417 16 N -0.317 5.317 17 C 0.052 3.948 18 C -0.008 4.008 19 C -0.542 4.542 20 H 0.073 0.927 21 C -0.171 4.171 22 N -0.539 5.539 23 Si 0.768 3.232 24 H -0.193 1.193 25 H -0.211 1.211 26 H -0.207 1.207 27 C -0.222 4.222 28 C -0.176 4.176 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.179 0.821 41 H 0.197 0.803 42 H 0.249 0.751 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.098 0.902 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.553 13.686 13.572 22.472 hybrid contribution -0.455 -2.181 0.277 2.245 sum -12.008 11.506 13.849 21.642 Atomic orbital electron populations 1.22183 0.93093 1.01548 1.03207 1.22353 0.95610 0.95401 0.87990 1.21957 1.00738 0.94157 1.03191 1.47970 1.39837 1.33064 1.08737 1.20471 0.92187 0.99489 0.83663 1.21526 0.93798 0.94588 0.94953 1.22206 1.00545 0.95868 0.99588 1.21943 0.92344 0.99554 0.97514 1.22501 0.99495 0.97953 0.98687 1.23256 0.97250 0.92340 0.94717 1.67561 0.98540 1.33311 1.19280 1.20107 0.80772 0.81376 0.88547 1.90704 1.63176 1.47255 1.39881 1.20345 0.80725 0.82681 0.88745 1.90498 1.60397 1.47677 1.43158 1.45798 1.45946 1.20857 1.19092 1.20874 0.93897 0.96139 0.83913 1.19097 0.87267 0.92115 1.02281 1.20655 1.27717 1.13323 0.92542 0.92735 1.25590 0.97475 0.98462 0.95614 1.70104 1.41020 1.45037 0.97752 0.85769 0.79486 0.79841 0.78142 1.19338 1.21105 1.20670 1.23061 1.03269 1.01511 0.94326 1.22349 1.01844 1.00774 0.92597 0.89233 0.91400 0.95184 0.86533 0.93487 0.90538 0.91066 0.86410 0.88095 0.84993 0.83059 0.82068 0.80309 0.75052 0.93904 0.92575 0.93103 0.89135 0.90245 0.91357 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.54 71.98 0.54 -2.72 16 2 C 0.09 2.26 2.71 44.99 0.12 2.38 16 3 C -0.14 -2.95 9.21 71.98 0.66 -2.29 16 4 N -0.56 -15.16 2.38 -803.71 -1.92 -17.07 16 5 C 0.16 3.58 5.00 85.63 0.43 4.01 16 6 C 0.09 2.05 5.94 42.55 0.25 2.30 16 7 C -0.16 -3.67 9.55 22.36 0.21 -3.45 16 8 C -0.09 -1.61 10.18 22.47 0.23 -1.38 16 9 C -0.17 -2.59 10.11 22.36 0.23 -2.36 16 10 C 0.08 1.40 11.18 84.67 0.95 2.35 16 11 N -0.48 -10.19 6.58 -183.89 -1.21 -11.40 16 12 C 0.51 16.72 7.69 87.27 0.67 17.39 16 13 O -0.53 -18.43 15.68 -3.25 -0.05 -18.48 16 14 C 0.49 18.36 7.67 87.27 0.67 19.03 16 15 O -0.54 -21.11 13.21 -3.23 -0.04 -21.15 16 16 N -0.67 -26.22 5.44 -464.41 -2.52 -28.74 16 17 C 0.18 7.62 5.53 86.38 0.48 8.10 16 18 C -0.01 -0.32 1.60 -52.93 -0.08 -0.40 16 19 C -0.50 -26.27 8.76 25.60 0.22 -26.05 16 20 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 21 C 0.03 1.57 5.41 84.66 0.46 2.03 16 22 N -0.90 -50.09 11.91 21.45 0.26 -49.84 16 23 Si 0.94 42.86 29.54 68.60 2.03 44.89 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 C -0.18 -7.45 9.96 30.62 0.30 -7.14 16 28 C -0.14 -6.22 8.85 30.62 0.27 -5.95 16 29 H 0.09 1.86 6.17 -2.38 -0.01 1.85 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 0.80 7.37 -2.39 -0.02 0.78 16 32 H 0.12 3.78 4.37 -43.19 -0.19 3.59 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.18 7.15 -2.39 -0.02 1.16 16 36 H 0.12 2.06 6.90 -2.38 -0.02 2.04 16 37 H 0.10 2.13 7.47 -2.39 -0.02 2.11 16 38 H 0.13 3.13 7.69 -2.91 -0.02 3.11 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.41 16.01 7.99 -92.71 -0.74 15.27 16 43 H 0.04 2.12 8.10 -2.39 -0.02 2.10 16 44 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 45 H 0.26 13.89 8.32 -92.71 -0.77 13.12 16 46 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 48 H 0.07 3.44 7.63 -2.39 -0.02 3.42 16 49 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -62.05 401.03 3.20 -58.85 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.05 Total: 37.13 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 6.62 Total: 5.82 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -5.40 Total: -107.06 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -0.09 Total: -39.63 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -62.05 3.20 -58.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347563861.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.509 kcal (2) G-P(sol) polarization free energy of solvation -62.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds