Wall clock time and date at job start Wed Apr 1 2020 03:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 N 1.46503 * 109.46887 * 119.99852 * 2 1 3 5 5 C 1.46506 * 119.99514 * 113.95412 * 4 2 1 6 6 C 1.53003 * 109.46803 * 87.83611 * 5 4 2 7 7 H 1.08998 * 110.22186 * 61.30948 * 6 5 4 8 8 C 1.54483 * 110.24052 * 183.24146 * 6 5 4 9 9 C 1.54758 * 101.70200 * 144.36064 * 8 6 5 10 10 C 1.51279 * 104.23706 * 335.30009 * 9 8 6 11 11 O 1.21285 * 124.94436 * 196.17406 * 10 9 8 12 12 N 1.34421 * 110.11194 * 16.19114 * 10 9 8 13 13 C 1.34770 * 120.00529 * 293.95152 * 4 2 1 14 14 O 1.21580 * 120.00349 * 185.54804 * 13 4 2 15 15 N 1.34780 * 119.99584 * 5.55270 * 13 4 2 16 16 C 1.39239 * 120.00096 * 185.40198 * 15 13 4 17 17 C 1.39483 * 119.83119 * 34.97484 * 16 15 13 18 18 C 1.36378 * 120.17018 * 179.75972 * 17 16 15 19 19 C 1.40861 * 119.82535 * 0.51439 * 18 17 16 20 20 C 1.41157 * 120.16508 * 179.76142 * 19 18 17 21 21 H 1.07994 * 120.00020 * 327.71429 * 20 19 18 22 22 C 1.39896 * 119.99888 * 147.70726 * 20 19 18 23 23 N 1.30886 * 119.99856 * 171.35796 * 22 20 19 24 24 Si 1.86793 * 120.00385 * 351.36306 * 22 20 19 25 25 H 1.48498 * 109.47386 * 90.63250 * 24 22 20 26 26 H 1.48500 * 109.47411 * 210.63607 * 24 22 20 27 27 H 1.48502 * 109.46999 * 330.63302 * 24 22 20 28 28 C 1.40870 * 119.67501 * 359.74131 * 19 18 17 29 29 C 1.36375 * 119.82799 * 359.97438 * 28 19 18 30 30 H 1.09006 * 109.47133 * 304.80028 * 1 2 3 31 31 H 1.09003 * 109.47117 * 64.79474 * 1 2 3 32 32 H 1.08997 * 109.47550 * 184.79788 * 1 2 3 33 33 H 1.08993 * 109.47079 * 239.99780 * 2 1 3 34 34 H 1.09002 * 109.46889 * 186.47011 * 3 2 1 35 35 H 1.08994 * 109.47461 * 306.47087 * 3 2 1 36 36 H 1.08998 * 109.47383 * 66.47649 * 3 2 1 37 37 H 1.08995 * 109.46965 * 207.83054 * 5 4 2 38 38 H 1.08994 * 109.47565 * 327.83296 * 5 4 2 39 39 H 1.09008 * 110.96429 * 262.53046 * 8 6 5 40 40 H 1.08993 * 110.97325 * 26.29458 * 8 6 5 41 41 H 1.09005 * 110.51936 * 216.58068 * 9 8 6 42 42 H 1.09001 * 110.41789 * 93.96964 * 9 8 6 43 43 H 0.96998 * 124.34244 * 180.42827 * 12 10 9 44 44 H 0.97005 * 119.99918 * 5.40542 * 15 13 4 45 45 H 1.08003 * 119.91644 * 0.02562 * 17 16 15 46 46 H 1.07996 * 120.08662 * 180.25802 * 18 17 16 47 47 H 0.96997 * 120.00306 * 180.02562 * 23 22 20 48 48 H 1.08005 * 120.08776 * 180.02562 * 28 19 18 49 49 H 1.08003 * 119.91858 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7481 -1.9542 1.0658 6 6 4.2388 -1.6651 0.8786 7 1 4.6320 -1.1365 1.7470 8 6 5.0151 -2.9824 0.6580 9 6 6.1000 -2.5417 -0.3538 10 6 5.4964 -1.3400 -1.0467 11 8 5.8953 -0.8664 -2.0896 12 7 4.4537 -0.8734 -0.3382 13 6 1.7962 -0.1635 2.4166 14 8 2.2868 -0.6816 3.4010 15 7 1.0301 0.9379 2.5456 16 6 0.8920 1.5480 3.7896 17 6 1.9681 1.5663 4.6767 18 6 1.8420 2.1663 5.8949 19 6 0.6175 2.7589 6.2606 20 6 0.4774 3.3774 7.5217 21 1 1.0218 2.9968 8.3732 22 6 -0.3664 4.4835 7.6684 23 7 -0.6292 4.9524 8.8618 24 14 -1.1183 5.2912 6.1612 25 1 -2.4293 4.6605 5.8637 26 1 -1.3137 6.7401 6.4216 27 1 -0.2094 5.1151 5.0001 28 6 -0.4665 2.7316 5.3614 29 6 -0.3234 2.1331 4.1444 30 1 -0.3634 0.5865 0.8439 31 1 -0.3633 0.4377 -0.9298 32 1 -0.3634 -1.0240 0.0860 33 1 1.8933 -0.5138 -0.8899 34 1 3.1238 1.4446 -0.1158 35 1 1.5852 1.9887 -0.8263 36 1 1.7744 1.9218 0.9422 37 1 2.6041 -2.5515 1.9661 38 1 2.3731 -2.5030 0.2019 39 1 5.4652 -3.3303 1.5878 40 1 4.3696 -3.7484 0.2283 41 1 6.2979 -3.3370 -1.0725 42 1 7.0151 -2.2614 0.1679 43 1 3.9127 -0.1114 -0.5981 44 1 0.5750 1.3055 1.7718 45 1 2.9051 1.1080 4.3965 46 1 2.6774 2.1834 6.5791 47 1 -1.2145 5.7191 8.9636 48 1 -1.4083 3.1843 5.6347 49 1 -1.1537 2.1110 3.4540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425002967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:58 Heat of formation + Delta-G solvation = -19.195517 kcal Electronic energy + Delta-G solvation = -30948.282232 eV Core-core repulsion = 26875.914551 eV Total energy + Delta-G solvation = -4072.367682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17143 -40.21372 -38.07863 -36.97620 -36.38635 -34.73610 -33.16005 -32.21989 -31.59598 -29.95565 -29.84140 -28.80947 -27.62166 -25.37143 -24.17298 -22.71328 -22.06933 -21.68862 -20.79925 -20.55837 -19.84065 -17.66695 -17.55123 -17.46457 -16.98624 -16.67762 -15.75402 -15.53164 -15.03655 -14.93570 -14.67480 -14.43659 -14.05997 -13.97130 -13.92790 -13.68938 -13.36219 -13.27204 -12.94122 -12.80238 -12.58805 -12.56896 -12.48985 -12.36246 -12.00402 -11.84999 -11.74389 -11.60793 -11.41750 -11.24261 -10.90783 -10.83372 -10.49888 -10.18190 -10.12712 -9.79670 -9.71909 -9.53144 -9.13308 -9.09199 -8.76639 -7.81965 -7.14408 -6.90103 -4.44054 2.33205 2.39342 2.61987 2.70420 3.06408 3.08238 3.19410 3.27730 3.42338 3.94569 3.96741 4.05439 4.13788 4.35965 4.43159 4.52561 4.65827 4.72573 4.79023 4.80502 5.00038 5.20847 5.23488 5.30775 5.33988 5.38571 5.39415 5.42736 5.43899 5.53714 5.71396 5.79870 5.86134 5.90259 6.04883 6.28182 6.42323 6.50900 6.63873 6.71504 6.75974 6.83513 6.90960 7.21204 7.34895 7.53184 7.63701 7.83548 7.97326 8.10106 8.18702 8.34563 8.61040 8.78926 8.87286 10.12429 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.002576 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.957867 B =10866.151862 C =11370.052524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.127 3.873 3 C -0.193 4.193 4 N -0.633 5.633 5 C 0.128 3.872 6 C 0.110 3.890 7 H 0.091 0.909 8 C -0.125 4.125 9 C -0.156 4.156 10 C 0.517 3.483 11 O -0.541 6.541 12 N -0.726 5.726 13 C 0.701 3.299 14 O -0.572 6.572 15 N -0.670 5.670 16 C 0.013 3.987 17 C -0.067 4.067 18 C -0.194 4.194 19 C 0.087 3.913 20 C -0.442 4.442 21 H 0.091 0.909 22 C 0.078 3.922 23 N -0.818 5.818 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.295 1.295 27 H -0.243 1.243 28 C -0.225 4.225 29 C -0.093 4.093 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.407 0.593 44 H 0.397 0.603 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.284 0.716 48 H 0.103 0.897 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.643 -12.239 -19.261 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.023 3.977 3 C -0.252 4.252 4 N -0.371 5.371 5 C 0.004 3.996 6 C 0.003 3.997 7 H 0.109 0.891 8 C -0.163 4.163 9 C -0.196 4.196 10 C 0.303 3.697 11 O -0.419 6.419 12 N -0.384 5.384 13 C 0.403 3.597 14 O -0.449 6.449 15 N -0.323 5.323 16 C -0.080 4.080 17 C -0.088 4.088 18 C -0.214 4.214 19 C 0.084 3.916 20 C -0.471 4.471 21 H 0.109 0.891 22 C -0.139 4.139 23 N -0.443 5.443 24 Si 0.746 3.254 25 H -0.199 1.199 26 H -0.223 1.223 27 H -0.166 1.166 28 C -0.245 4.245 29 C -0.113 4.113 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.249 0.751 44 H 0.239 0.761 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.095 0.905 48 H 0.121 0.879 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.183 -12.286 -18.842 23.083 hybrid contribution -1.022 0.981 -0.923 1.691 sum 4.161 -11.305 -19.764 23.146 Atomic orbital electron populations 1.22442 0.94891 1.03297 1.02855 1.21187 0.94581 0.93556 0.88354 1.22652 1.01860 0.96016 1.04646 1.47341 1.60203 1.24960 1.04592 1.21674 0.88920 0.85280 1.03742 1.22280 0.96894 0.92432 0.88048 0.89073 1.22654 0.96945 0.96260 1.00491 1.22369 1.00004 0.97545 0.99682 1.20956 0.79994 0.85061 0.83691 1.90757 1.64490 1.63745 1.22865 1.46609 1.33443 1.33856 1.24481 1.15945 0.80374 0.80502 0.82845 1.90923 1.55094 1.62627 1.36219 1.43062 1.50816 1.27719 1.10725 1.16967 0.95276 1.08332 0.87423 1.20373 0.96524 0.97520 0.94334 1.20728 0.97139 1.06868 0.96629 1.17798 0.90483 0.90881 0.92468 1.19474 1.21881 1.10732 0.95030 0.89112 1.26174 0.93536 0.96752 0.97435 1.69662 1.29100 1.21552 1.23954 0.86262 0.80120 0.76335 0.82703 1.19882 1.22314 1.16630 1.20609 0.98649 1.08996 0.96213 1.20077 0.93949 1.00772 0.96519 0.91637 0.90874 0.91498 0.88971 0.92089 0.90532 0.89865 0.87916 0.90166 0.88616 0.89636 0.88000 0.87708 0.75147 0.76061 0.87521 0.87843 0.90523 0.87898 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.11 37.16 0.34 -1.00 16 2 C 0.13 1.03 2.19 -67.93 -0.15 0.88 16 3 C -0.19 -1.66 8.73 37.16 0.32 -1.34 16 4 N -0.63 -6.70 2.36 -171.81 -0.40 -7.11 16 5 C 0.13 1.08 4.99 -4.04 -0.02 1.06 16 6 C 0.11 0.89 3.78 -67.01 -0.25 0.63 16 7 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.13 -0.67 6.70 -25.03 -0.17 -0.84 16 9 C -0.16 -1.03 6.86 -26.67 -0.18 -1.21 16 10 C 0.52 5.42 8.43 -10.86 -0.09 5.33 16 11 O -0.54 -7.96 18.03 5.55 0.10 -7.86 16 12 N -0.73 -6.59 5.62 -52.76 -0.30 -6.89 16 13 C 0.70 10.83 7.36 -86.92 -0.64 10.19 16 14 O -0.57 -11.00 13.72 5.30 0.07 -10.92 16 15 N -0.67 -10.61 3.64 -14.10 -0.05 -10.66 16 16 C 0.01 0.26 6.26 -83.57 -0.52 -0.26 16 17 C -0.07 -1.48 8.57 -39.79 -0.34 -1.82 16 18 C -0.19 -4.58 9.74 -39.26 -0.38 -4.97 16 19 C 0.09 2.20 5.15 -106.80 -0.55 1.65 16 20 C -0.44 -11.96 9.60 -37.85 -0.36 -12.32 16 21 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.08 2.05 5.49 -17.33 -0.10 1.96 16 23 N -0.82 -21.89 13.93 55.55 0.77 -21.12 16 24 Si 0.92 20.61 24.36 -169.99 -4.14 16.47 16 25 H -0.27 -5.90 6.65 56.52 0.38 -5.52 16 26 H -0.30 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.24 -5.50 6.57 56.52 0.37 -5.13 16 28 C -0.23 -5.29 6.85 -39.26 -0.27 -5.56 16 29 C -0.09 -1.92 9.90 -39.79 -0.39 -2.32 16 30 H 0.06 0.60 5.30 -51.93 -0.28 0.33 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.61 7.18 -51.93 -0.37 0.24 16 34 H 0.06 0.54 6.35 -51.93 -0.33 0.21 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.91 4.90 -51.93 -0.25 0.66 16 37 H 0.10 0.98 7.44 -51.93 -0.39 0.59 16 38 H 0.08 0.50 8.00 -51.93 -0.42 0.08 16 39 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.09 0.34 7.90 -51.93 -0.41 -0.07 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.41 3.76 4.84 -40.82 -0.20 3.56 16 44 H 0.40 5.14 3.41 -40.82 -0.14 5.00 16 45 H 0.11 2.30 6.52 -52.48 -0.34 1.95 16 46 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 47 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 48 H 0.10 2.40 4.23 -52.48 -0.22 2.18 16 49 H 0.09 1.66 8.06 -52.48 -0.42 1.23 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -32.64 377.24 -8.79 -41.42 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.76 Total: 10.94 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.76 Total: -9.95 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.02 Total: -45.78 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.14 Total: 16.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.64 -8.79 -41.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425002967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.226 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds