Wall clock time and date at job start Wed Apr 1 2020 03:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 N 1.46503 * 109.46887 * 119.99852 * 2 1 3 5 5 C 1.46506 * 119.99514 * 113.95412 * 4 2 1 6 6 C 1.53003 * 109.46803 * 87.83611 * 5 4 2 7 7 H 1.08998 * 110.22186 * 61.30948 * 6 5 4 8 8 C 1.54483 * 110.24052 * 183.24146 * 6 5 4 9 9 C 1.54758 * 101.70200 * 144.36064 * 8 6 5 10 10 C 1.51279 * 104.23706 * 335.30009 * 9 8 6 11 11 O 1.21285 * 124.94436 * 196.17406 * 10 9 8 12 12 N 1.34421 * 110.11194 * 16.19114 * 10 9 8 13 13 C 1.34770 * 120.00529 * 293.95152 * 4 2 1 14 14 O 1.21580 * 120.00349 * 185.54804 * 13 4 2 15 15 N 1.34780 * 119.99584 * 5.55270 * 13 4 2 16 16 C 1.39239 * 120.00096 * 185.40198 * 15 13 4 17 17 C 1.39483 * 119.83119 * 34.97484 * 16 15 13 18 18 C 1.36378 * 120.17018 * 179.75972 * 17 16 15 19 19 C 1.40861 * 119.82535 * 0.51439 * 18 17 16 20 20 C 1.41157 * 120.16508 * 179.76142 * 19 18 17 21 21 H 1.07994 * 120.00020 * 327.71429 * 20 19 18 22 22 C 1.39896 * 119.99888 * 147.70726 * 20 19 18 23 23 N 1.30886 * 119.99856 * 171.35796 * 22 20 19 24 24 Si 1.86793 * 120.00385 * 351.36306 * 22 20 19 25 25 H 1.48498 * 109.47386 * 90.63250 * 24 22 20 26 26 H 1.48500 * 109.47411 * 210.63607 * 24 22 20 27 27 H 1.48502 * 109.46999 * 330.63302 * 24 22 20 28 28 C 1.40870 * 119.67501 * 359.74131 * 19 18 17 29 29 C 1.36375 * 119.82799 * 359.97438 * 28 19 18 30 30 H 1.09006 * 109.47133 * 304.80028 * 1 2 3 31 31 H 1.09003 * 109.47117 * 64.79474 * 1 2 3 32 32 H 1.08997 * 109.47550 * 184.79788 * 1 2 3 33 33 H 1.08993 * 109.47079 * 239.99780 * 2 1 3 34 34 H 1.09002 * 109.46889 * 186.47011 * 3 2 1 35 35 H 1.08994 * 109.47461 * 306.47087 * 3 2 1 36 36 H 1.08998 * 109.47383 * 66.47649 * 3 2 1 37 37 H 1.08995 * 109.46965 * 207.83054 * 5 4 2 38 38 H 1.08994 * 109.47565 * 327.83296 * 5 4 2 39 39 H 1.09008 * 110.96429 * 262.53046 * 8 6 5 40 40 H 1.08993 * 110.97325 * 26.29458 * 8 6 5 41 41 H 1.09005 * 110.51936 * 216.58068 * 9 8 6 42 42 H 1.09001 * 110.41789 * 93.96964 * 9 8 6 43 43 H 0.96998 * 124.34244 * 180.42827 * 12 10 9 44 44 H 0.97005 * 119.99918 * 5.40542 * 15 13 4 45 45 H 1.08003 * 119.91644 * 0.02562 * 17 16 15 46 46 H 1.07996 * 120.08662 * 180.25802 * 18 17 16 47 47 H 0.96997 * 120.00306 * 180.02562 * 23 22 20 48 48 H 1.08005 * 120.08776 * 180.02562 * 28 19 18 49 49 H 1.08003 * 119.91858 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7481 -1.9542 1.0658 6 6 4.2388 -1.6651 0.8786 7 1 4.6320 -1.1365 1.7470 8 6 5.0151 -2.9824 0.6580 9 6 6.1000 -2.5417 -0.3538 10 6 5.4964 -1.3400 -1.0467 11 8 5.8953 -0.8664 -2.0896 12 7 4.4537 -0.8734 -0.3382 13 6 1.7962 -0.1635 2.4166 14 8 2.2868 -0.6816 3.4010 15 7 1.0301 0.9379 2.5456 16 6 0.8920 1.5480 3.7896 17 6 1.9681 1.5663 4.6767 18 6 1.8420 2.1663 5.8949 19 6 0.6175 2.7589 6.2606 20 6 0.4774 3.3774 7.5217 21 1 1.0218 2.9968 8.3732 22 6 -0.3664 4.4835 7.6684 23 7 -0.6292 4.9524 8.8618 24 14 -1.1183 5.2912 6.1612 25 1 -2.4293 4.6605 5.8637 26 1 -1.3137 6.7401 6.4216 27 1 -0.2094 5.1151 5.0001 28 6 -0.4665 2.7316 5.3614 29 6 -0.3234 2.1331 4.1444 30 1 -0.3634 0.5865 0.8439 31 1 -0.3633 0.4377 -0.9298 32 1 -0.3634 -1.0240 0.0860 33 1 1.8933 -0.5138 -0.8899 34 1 3.1238 1.4446 -0.1158 35 1 1.5852 1.9887 -0.8263 36 1 1.7744 1.9218 0.9422 37 1 2.6041 -2.5515 1.9661 38 1 2.3731 -2.5030 0.2019 39 1 5.4652 -3.3303 1.5878 40 1 4.3696 -3.7484 0.2283 41 1 6.2979 -3.3370 -1.0725 42 1 7.0151 -2.2614 0.1679 43 1 3.9127 -0.1114 -0.5981 44 1 0.5750 1.3055 1.7718 45 1 2.9051 1.1080 4.3965 46 1 2.6774 2.1834 6.5791 47 1 -1.2145 5.7191 8.9636 48 1 -1.4083 3.1843 5.6347 49 1 -1.1537 2.1110 3.4540 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001425002967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:57 Heat of formation + Delta-G solvation = -40.670763 kcal Electronic energy + Delta-G solvation = -30949.213469 eV Core-core repulsion = 26875.914551 eV Total energy + Delta-G solvation = -4073.298918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18249 -41.15640 -39.64984 -38.04447 -37.33966 -36.23877 -34.87893 -33.13530 -32.20661 -31.76120 -31.43692 -29.77326 -28.25769 -26.84774 -25.19629 -23.81843 -23.61617 -22.35772 -22.22799 -21.50887 -21.10418 -19.39295 -18.81360 -18.44213 -17.97350 -17.52335 -17.16017 -16.65625 -16.44040 -15.85128 -15.80135 -15.73203 -15.38272 -15.05815 -14.80660 -14.78143 -14.44829 -14.30248 -14.25228 -14.12140 -13.94477 -13.80261 -13.47130 -13.23299 -13.15214 -12.69039 -12.65820 -12.49863 -12.44209 -12.36500 -12.23298 -11.99655 -11.94412 -11.85003 -11.61489 -11.22769 -10.96068 -10.92798 -10.71589 -10.34854 -9.69219 -9.60776 -8.87881 -8.81179 -6.43398 0.66686 0.85734 1.27201 1.41312 1.51851 1.54375 1.62597 2.10444 2.15303 2.35815 2.66979 2.86931 3.42730 3.48976 3.58494 3.71747 3.81269 4.01953 4.08884 4.17678 4.20388 4.23053 4.28510 4.41939 4.53912 4.57790 4.65693 4.67406 4.76631 4.82233 4.86052 4.87966 4.91496 4.95320 5.08640 5.09830 5.16175 5.18584 5.23083 5.37768 5.42229 5.57910 5.68063 5.79316 5.83554 5.94563 5.99203 6.02301 6.25906 6.38324 6.73217 6.82245 6.94683 7.19106 7.59993 8.25647 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.002576 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.957867 B =10866.151862 C =11370.052524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.124 3.876 3 C -0.192 4.192 4 N -0.620 5.620 5 C 0.125 3.875 6 C 0.112 3.888 7 H 0.066 0.934 8 C -0.113 4.113 9 C -0.149 4.149 10 C 0.509 3.491 11 O -0.590 6.590 12 N -0.721 5.721 13 C 0.699 3.301 14 O -0.613 6.613 15 N -0.665 5.665 16 C 0.044 3.956 17 C -0.077 4.077 18 C -0.204 4.204 19 C 0.065 3.935 20 C -0.481 4.481 21 H 0.051 0.949 22 C 0.037 3.963 23 N -0.863 5.863 24 Si 0.974 3.026 25 H -0.253 1.253 26 H -0.285 1.285 27 H -0.245 1.245 28 C -0.228 4.228 29 C -0.095 4.095 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.405 0.595 44 H 0.415 0.585 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.292 0.708 48 H 0.107 0.893 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -13.903 -23.538 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.022 3.978 3 C -0.251 4.251 4 N -0.357 5.357 5 C 0.001 3.999 6 C 0.005 3.995 7 H 0.084 0.916 8 C -0.151 4.151 9 C -0.189 4.189 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.377 5.377 13 C 0.401 3.599 14 O -0.493 6.493 15 N -0.320 5.320 16 C -0.050 4.050 17 C -0.097 4.097 18 C -0.224 4.224 19 C 0.062 3.938 20 C -0.511 4.511 21 H 0.069 0.931 22 C -0.175 4.175 23 N -0.491 5.491 24 Si 0.798 3.202 25 H -0.179 1.179 26 H -0.212 1.212 27 H -0.169 1.169 28 C -0.247 4.247 29 C -0.115 4.115 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.246 0.754 44 H 0.261 0.739 45 H 0.127 0.873 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.125 0.875 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.099 -13.986 -23.165 27.368 hybrid contribution -0.555 1.297 0.197 1.424 sum 3.544 -12.689 -22.968 26.478 Atomic orbital electron populations 1.22432 0.93886 1.03402 1.03477 1.21447 0.95319 0.93297 0.87780 1.22644 1.01726 0.96385 1.04308 1.47402 1.59288 1.25315 1.03685 1.21908 0.88888 0.84318 1.04769 1.22255 0.97026 0.93518 0.86669 0.91556 1.22696 0.96421 0.95096 1.00923 1.22409 1.00343 0.96219 0.99947 1.21603 0.79875 0.85753 0.83083 1.90729 1.65847 1.65446 1.25106 1.46673 1.33009 1.33634 1.24374 1.16137 0.79708 0.80152 0.83868 1.90907 1.56415 1.63752 1.38213 1.43013 1.51333 1.27999 1.09698 1.17107 0.94253 1.05463 0.88223 1.20470 0.97481 0.97597 0.94134 1.20830 0.96902 1.07208 0.97489 1.17879 0.91679 0.91777 0.92474 1.19414 1.23837 1.12894 0.94996 0.93112 1.26922 0.93727 0.96646 1.00193 1.69708 1.30898 1.22820 1.25644 0.85404 0.79845 0.75967 0.78989 1.17852 1.21216 1.16858 1.20756 0.98118 1.09013 0.96859 1.20425 0.95237 0.99600 0.96243 0.93176 0.88347 0.91279 0.86553 0.92758 0.88032 0.92167 0.88776 0.86825 0.87300 0.87306 0.86342 0.86996 0.75423 0.73944 0.87268 0.88404 0.89768 0.87511 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.11 71.98 0.66 -1.22 16 2 C 0.12 1.53 2.19 44.99 0.10 1.63 16 3 C -0.19 -2.70 8.73 71.98 0.63 -2.07 16 4 N -0.62 -11.35 2.36 -815.74 -1.92 -13.27 16 5 C 0.12 1.71 4.99 86.38 0.43 2.14 16 6 C 0.11 1.53 3.78 45.45 0.17 1.71 16 7 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 8 C -0.11 -0.83 6.70 31.70 0.21 -0.62 16 9 C -0.15 -1.56 6.86 30.63 0.21 -1.35 16 10 C 0.51 9.76 8.43 87.90 0.74 10.50 16 11 O -0.59 -16.89 18.03 -3.04 -0.05 -16.95 16 12 N -0.72 -11.52 5.62 -439.44 -2.47 -13.99 16 13 C 0.70 20.17 7.36 179.06 1.32 21.49 16 14 O -0.61 -22.99 13.72 -3.97 -0.05 -23.05 16 15 N -0.66 -19.35 3.64 -316.79 -1.15 -20.50 16 16 C 0.04 1.69 6.26 38.56 0.24 1.93 16 17 C -0.08 -3.35 8.57 22.14 0.19 -3.16 16 18 C -0.20 -10.00 9.74 22.48 0.22 -9.78 16 19 C 0.06 3.36 5.15 -21.28 -0.11 3.25 16 20 C -0.48 -27.67 9.60 23.39 0.22 -27.44 16 21 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 22 C 0.04 2.03 5.49 85.24 0.47 2.50 16 23 N -0.86 -48.43 13.93 21.82 0.30 -48.12 16 24 Si 0.97 42.39 24.36 68.60 1.67 44.06 16 25 H -0.25 -10.16 6.65 99.48 0.66 -9.49 16 26 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 27 H -0.25 -10.61 6.57 99.48 0.65 -9.96 16 28 C -0.23 -10.48 6.85 22.48 0.15 -10.33 16 29 C -0.09 -3.67 9.90 22.13 0.22 -3.45 16 30 H 0.05 0.71 5.30 -2.38 -0.01 0.70 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.12 0.98 7.18 -2.39 -0.02 0.96 16 34 H 0.05 0.84 6.35 -2.39 -0.02 0.83 16 35 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.15 4.90 -2.39 -0.01 1.14 16 37 H 0.09 1.55 7.44 -2.39 -0.02 1.53 16 38 H 0.11 0.86 8.00 -2.39 -0.02 0.84 16 39 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.11 0.36 7.90 -2.39 -0.02 0.34 16 41 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.40 6.55 4.84 -92.71 -0.45 6.10 16 44 H 0.41 9.32 3.41 -92.70 -0.32 9.00 16 45 H 0.11 4.73 6.52 -2.91 -0.02 4.71 16 46 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 47 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 48 H 0.11 4.81 4.23 -2.91 -0.01 4.79 16 49 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -76.27 377.24 2.53 -73.74 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.14 Total: 32.34 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 6.07 Total: -14.27 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -5.24 Total: -95.88 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.11 Total: -39.99 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.67 Total: 44.06 kcal Total: -76.27 2.53 -73.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425002967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.068 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds