Wall clock time and date at job start Wed Apr 1 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47150 * 2 1 4 4 N 1.46502 * 109.47208 * 119.99711 * 2 1 3 5 5 C 1.46502 * 119.99685 * 309.86257 * 4 2 1 6 6 C 1.50701 * 109.46640 * 269.99243 * 5 4 2 7 7 H 1.07995 * 120.00522 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99826 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99859 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00229 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47013 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47363 * 119.99953 * 10 8 6 13 13 H 1.48494 * 109.47318 * 240.00325 * 10 8 6 14 14 C 1.34772 * 119.99843 * 129.85511 * 4 2 1 15 15 O 1.21516 * 119.99794 * 172.67539 * 14 4 2 16 16 C 1.48224 * 120.00446 * 352.95343 * 14 4 2 17 17 C 1.39624 * 119.65611 * 162.07329 * 16 14 4 18 18 C 1.38540 * 119.24743 * 179.75508 * 17 16 14 19 19 C 1.38591 * 118.55178 * 0.51002 * 18 17 16 20 20 C 1.39587 * 119.24651 * 359.72782 * 19 18 17 21 21 C 1.48222 * 119.65653 * 179.97438 * 20 19 18 22 22 O 1.21514 * 119.99854 * 6.51166 * 21 20 19 23 23 N 1.34774 * 120.00255 * 186.50860 * 21 20 19 24 24 C 1.47020 * 125.64932 * 9.63251 * 23 21 20 25 25 C 1.54313 * 107.27660 * 180.96737 * 24 23 21 26 26 C 1.55160 * 102.86344 * 22.52602 * 25 24 23 27 27 C 1.47430 * 125.64717 * 189.93762 * 23 21 20 28 28 N 1.32348 * 119.65247 * 342.34579 * 16 14 4 29 29 H 1.09002 * 109.47395 * 276.06515 * 1 2 3 30 30 H 1.09009 * 109.46893 * 36.06367 * 1 2 3 31 31 H 1.08992 * 109.47435 * 156.06491 * 1 2 3 32 32 H 1.08996 * 109.47252 * 239.99940 * 2 1 3 33 33 H 1.09007 * 109.46835 * 185.65458 * 3 2 1 34 34 H 1.08998 * 109.46720 * 305.65197 * 3 2 1 35 35 H 1.08994 * 109.47103 * 65.65522 * 3 2 1 36 36 H 1.08991 * 109.47606 * 29.99688 * 5 4 2 37 37 H 1.08999 * 109.46962 * 149.99994 * 5 4 2 38 38 H 0.97005 * 119.99484 * 179.97438 * 9 8 6 39 39 H 1.08000 * 120.37622 * 0.02562 * 17 16 14 40 40 H 1.08001 * 120.72908 * 180.24331 * 18 17 16 41 41 H 1.08000 * 120.37882 * 179.70878 * 19 18 17 42 42 H 1.09004 * 109.88093 * 300.51388 * 24 23 21 43 43 H 1.09000 * 109.88206 * 61.67608 * 24 23 21 44 44 H 1.08998 * 110.92622 * 264.11078 * 25 24 23 45 45 H 1.09003 * 110.59028 * 140.78644 * 25 24 23 46 46 H 1.08996 * 111.00589 * 206.23025 * 26 25 24 47 47 H 1.09002 * 111.00530 * 82.37705 * 26 25 24 48 48 H 1.08996 * 110.36829 * 274.67278 * 27 23 21 49 49 H 1.09004 * 110.36393 * 36.88866 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.4958 -0.3279 2.5159 6 6 2.3450 0.7668 3.1089 7 1 3.1892 1.1539 2.5577 8 6 2.0442 1.2741 4.3552 9 7 1.0164 0.8023 5.0267 10 14 3.0963 2.6315 5.0899 11 1 4.1828 2.9842 4.1410 12 1 2.2542 3.8279 5.3442 13 1 3.6882 2.1619 6.3683 14 6 2.9481 -1.6595 1.0825 15 8 3.4504 -2.1395 2.0794 16 6 3.3626 -2.1353 -0.2587 17 6 4.5580 -2.8425 -0.4019 18 6 4.9347 -3.2877 -1.6586 19 6 4.1110 -3.0037 -2.7363 20 6 2.9319 -2.2876 -2.5235 21 6 2.0445 -1.9783 -3.6697 22 8 2.2818 -2.4470 -4.7655 23 7 0.9744 -1.1775 -3.4967 24 6 0.6806 -0.3885 -2.2915 25 6 -0.6522 0.3486 -2.5399 26 6 -1.3235 -0.5134 -3.6416 27 6 -0.0987 -0.9525 -4.4823 28 7 2.5984 -1.8808 -1.3088 29 1 -0.3634 0.1086 1.0219 30 1 -0.3633 0.8308 -0.6050 31 1 -0.3634 -0.9392 -0.4169 32 1 1.8933 -0.5138 -0.8899 33 1 3.1253 1.4441 -0.1013 34 1 1.5963 1.9847 -0.8351 35 1 1.7617 1.9263 0.9362 36 1 0.4686 0.0227 2.4163 37 1 1.5201 -1.2005 3.1687 38 1 0.8051 1.1590 5.9037 39 1 5.1797 -3.0439 0.4579 40 1 5.8524 -3.8403 -1.7961 41 1 4.3784 -3.3325 -3.7297 42 1 0.5859 -1.0493 -1.4298 43 1 1.4764 0.3363 -2.1198 44 1 -0.4753 1.3627 -2.8980 45 1 -1.2593 0.3585 -1.6346 46 1 -2.0133 0.0833 -4.2384 47 1 -1.8297 -1.3761 -3.2085 48 1 0.1854 -0.1641 -5.1791 49 1 -0.3175 -1.8740 -5.0218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433635470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:18 Heat of formation + Delta-G solvation = 67.898774 kcal Electronic energy + Delta-G solvation = -32656.751801 eV Core-core repulsion = 28588.160811 eV Total energy + Delta-G solvation = -4068.590990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.41916 -39.63121 -38.95435 -37.60763 -36.15733 -33.27430 -33.03651 -31.98607 -31.83066 -30.98946 -28.74367 -27.55043 -26.50104 -25.44507 -24.61006 -23.09576 -22.98757 -21.73560 -21.04892 -20.34825 -18.45477 -17.97057 -16.95542 -16.73054 -16.46056 -16.38765 -15.76289 -15.29148 -15.17198 -14.88999 -14.49394 -14.30091 -14.22912 -13.82962 -13.68992 -13.54218 -13.22030 -13.06776 -12.74298 -12.60256 -12.39622 -12.19756 -12.02684 -11.90079 -11.62687 -11.48745 -11.11144 -10.94805 -10.86772 -10.81694 -10.70001 -10.44144 -10.31800 -10.29772 -10.12325 -9.97098 -9.57099 -9.43628 -9.31932 -8.72093 -8.50545 -8.42051 -7.65390 -6.05039 -4.07823 0.43829 0.78499 2.45904 2.75292 3.25384 3.28524 3.36790 3.40259 3.59887 3.77461 4.04190 4.34963 4.43564 4.50379 4.63045 4.71956 4.79490 4.81366 4.84201 5.13308 5.17832 5.28412 5.29733 5.36816 5.45769 5.52119 5.55635 5.63587 5.68786 5.75895 5.81808 5.86815 5.91031 5.97115 6.01887 6.10185 6.17158 6.20892 6.30564 6.35438 6.53375 6.71645 7.01807 7.09589 7.28657 7.39623 7.42768 7.55427 7.91432 7.95243 8.22846 8.37868 8.82924 9.00187 9.55910 11.03013 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.004192 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.749676 B = 6678.308105 C = 8257.264832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.054 3.946 3 C -0.165 4.165 4 N -0.565 5.565 5 C 0.239 3.761 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.553 3.447 15 O -0.528 6.528 16 C 0.096 3.904 17 C -0.094 4.094 18 C -0.083 4.083 19 C -0.100 4.100 20 C 0.069 3.931 21 C 0.588 3.412 22 O -0.538 6.538 23 N -0.603 5.603 24 C 0.058 3.942 25 C -0.153 4.153 26 C -0.135 4.135 27 C 0.105 3.895 28 N -0.424 5.424 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.170 0.830 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.262 0.738 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 -3.529 -18.588 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.049 4.049 3 C -0.223 4.223 4 N -0.294 5.294 5 C 0.121 3.879 6 C -0.556 4.556 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.337 3.663 15 O -0.404 6.404 16 C -0.045 4.045 17 C -0.115 4.115 18 C -0.109 4.109 19 C -0.121 4.121 20 C -0.070 4.070 21 C 0.375 3.625 22 O -0.415 6.415 23 N -0.336 5.336 24 C -0.063 4.063 25 C -0.191 4.191 26 C -0.173 4.173 27 C -0.017 4.017 28 N -0.139 5.139 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.185 0.815 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.150 0.850 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.700 -3.557 -18.344 18.763 hybrid contribution 1.307 0.586 0.508 1.519 sum -0.394 -2.971 -17.836 18.086 Atomic orbital electron populations 1.23217 0.96269 1.01277 1.04037 1.23621 0.94491 0.94848 0.91972 1.22272 1.00325 0.96789 1.02900 1.48216 1.38035 1.33290 1.09865 1.19421 0.94678 0.96667 0.77168 1.21445 1.13242 1.18836 1.02030 0.92244 1.24918 0.95327 0.97134 0.96726 1.69941 1.27511 1.42607 1.13373 0.86498 0.80391 0.81616 0.79253 1.19848 1.21059 1.20949 1.17723 0.81122 0.81499 0.85980 1.90786 1.54034 1.58904 1.36694 1.21861 0.92525 0.96714 0.93372 1.22389 0.95944 0.94183 0.98961 1.21662 0.99818 0.97798 0.91628 1.22198 0.93026 0.95775 1.01094 1.21204 0.95095 0.98930 0.91766 1.17449 0.79813 0.78462 0.86762 1.90773 1.71967 1.53809 1.24916 1.48444 1.22396 1.44321 1.18396 1.24442 0.97198 0.96225 0.88411 1.23313 0.96354 0.99061 1.00348 1.22822 0.96501 1.00463 0.97517 1.22295 0.86292 1.01404 0.91753 1.67463 1.31203 1.16591 0.98680 0.90924 0.90164 0.91953 0.81545 0.93725 0.93273 0.89867 0.93929 0.94141 0.92849 0.82759 0.83296 0.83186 0.84955 0.90168 0.90567 0.87644 0.89835 0.90465 0.91343 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 6.58 37.16 0.24 -2.46 16 2 C 0.05 0.88 1.65 -67.93 -0.11 0.77 16 3 C -0.16 -2.72 8.33 37.16 0.31 -2.41 16 4 N -0.56 -11.72 2.39 -168.44 -0.40 -12.13 16 5 C 0.24 5.98 4.75 -5.19 -0.02 5.96 16 6 C -0.52 -14.03 7.78 -34.44 -0.27 -14.30 16 7 H 0.06 1.63 7.51 -52.49 -0.39 1.24 16 8 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 9 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 10 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.55 11.53 7.59 -12.16 -0.09 11.43 16 15 O -0.53 -12.84 16.12 5.35 0.09 -12.75 16 16 C 0.10 1.57 6.50 -83.02 -0.54 1.03 16 17 C -0.09 -1.26 9.63 -38.95 -0.38 -1.63 16 18 C -0.08 -0.86 10.16 -39.34 -0.40 -1.25 16 19 C -0.10 -1.14 9.63 -38.95 -0.38 -1.51 16 20 C 0.07 0.94 6.68 -83.03 -0.55 0.39 16 21 C 0.59 8.26 7.80 -12.16 -0.09 8.16 16 22 O -0.54 -8.51 16.68 5.35 0.09 -8.42 16 23 N -0.60 -7.36 3.33 -171.49 -0.57 -7.93 16 24 C 0.06 0.66 3.06 -3.07 -0.01 0.65 16 25 C -0.15 -1.34 5.42 -24.90 -0.13 -1.47 16 26 C -0.13 -1.04 7.08 -24.58 -0.17 -1.21 16 27 C 0.10 1.02 6.88 -2.53 -0.02 1.00 16 28 N -0.42 -6.30 4.63 -6.38 -0.03 -6.33 16 29 H 0.07 1.22 5.53 -51.93 -0.29 0.94 16 30 H 0.08 0.91 4.45 -51.92 -0.23 0.68 16 31 H 0.06 0.81 5.77 -51.93 -0.30 0.51 16 32 H 0.17 2.54 0.89 -94.32 -0.08 2.45 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.65 7.42 -51.93 -0.39 0.26 16 35 H 0.08 1.62 6.54 -51.93 -0.34 1.28 16 36 H 0.04 1.06 5.65 -51.93 -0.29 0.77 16 37 H 0.04 1.15 7.53 -51.93 -0.39 0.76 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.15 1.99 7.74 -52.49 -0.41 1.58 16 40 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.15 1.47 7.65 -52.49 -0.40 1.07 16 42 H 0.13 1.73 2.58 -51.93 -0.13 1.60 16 43 H 0.08 0.99 5.15 -51.93 -0.27 0.72 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.11 0.89 5.16 -51.93 -0.27 0.62 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -33.08 367.08 -8.57 -41.65 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.28 Total: 4.30 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.72 Total: 4.71 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.27 Total: -51.47 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.08 -8.57 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433635470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.547 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds