Wall clock time and date at job start Wed Apr 1 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47150 * 2 1 4 4 N 1.46502 * 109.47208 * 119.99711 * 2 1 3 5 5 C 1.46502 * 119.99685 * 309.86257 * 4 2 1 6 6 C 1.50701 * 109.46640 * 269.99243 * 5 4 2 7 7 H 1.07995 * 120.00522 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99826 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99859 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00229 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47013 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47363 * 119.99953 * 10 8 6 13 13 H 1.48494 * 109.47318 * 240.00325 * 10 8 6 14 14 C 1.34772 * 119.99843 * 129.85511 * 4 2 1 15 15 O 1.21516 * 119.99794 * 172.67539 * 14 4 2 16 16 C 1.48224 * 120.00446 * 352.95343 * 14 4 2 17 17 C 1.39624 * 119.65611 * 162.07329 * 16 14 4 18 18 C 1.38540 * 119.24743 * 179.75508 * 17 16 14 19 19 C 1.38591 * 118.55178 * 0.51002 * 18 17 16 20 20 C 1.39587 * 119.24651 * 359.72782 * 19 18 17 21 21 C 1.48222 * 119.65653 * 179.97438 * 20 19 18 22 22 O 1.21514 * 119.99854 * 6.51166 * 21 20 19 23 23 N 1.34774 * 120.00255 * 186.50860 * 21 20 19 24 24 C 1.47020 * 125.64932 * 9.63251 * 23 21 20 25 25 C 1.54313 * 107.27660 * 180.96737 * 24 23 21 26 26 C 1.55160 * 102.86344 * 22.52602 * 25 24 23 27 27 C 1.47430 * 125.64717 * 189.93762 * 23 21 20 28 28 N 1.32348 * 119.65247 * 342.34579 * 16 14 4 29 29 H 1.09002 * 109.47395 * 276.06515 * 1 2 3 30 30 H 1.09009 * 109.46893 * 36.06367 * 1 2 3 31 31 H 1.08992 * 109.47435 * 156.06491 * 1 2 3 32 32 H 1.08996 * 109.47252 * 239.99940 * 2 1 3 33 33 H 1.09007 * 109.46835 * 185.65458 * 3 2 1 34 34 H 1.08998 * 109.46720 * 305.65197 * 3 2 1 35 35 H 1.08994 * 109.47103 * 65.65522 * 3 2 1 36 36 H 1.08991 * 109.47606 * 29.99688 * 5 4 2 37 37 H 1.08999 * 109.46962 * 149.99994 * 5 4 2 38 38 H 0.97005 * 119.99484 * 179.97438 * 9 8 6 39 39 H 1.08000 * 120.37622 * 0.02562 * 17 16 14 40 40 H 1.08001 * 120.72908 * 180.24331 * 18 17 16 41 41 H 1.08000 * 120.37882 * 179.70878 * 19 18 17 42 42 H 1.09004 * 109.88093 * 300.51388 * 24 23 21 43 43 H 1.09000 * 109.88206 * 61.67608 * 24 23 21 44 44 H 1.08998 * 110.92622 * 264.11078 * 25 24 23 45 45 H 1.09003 * 110.59028 * 140.78644 * 25 24 23 46 46 H 1.08996 * 111.00589 * 206.23025 * 26 25 24 47 47 H 1.09002 * 111.00530 * 82.37705 * 26 25 24 48 48 H 1.08996 * 110.36829 * 274.67278 * 27 23 21 49 49 H 1.09004 * 110.36393 * 36.88866 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.4958 -0.3279 2.5159 6 6 2.3450 0.7668 3.1089 7 1 3.1892 1.1539 2.5577 8 6 2.0442 1.2741 4.3552 9 7 1.0164 0.8023 5.0267 10 14 3.0963 2.6315 5.0899 11 1 4.1828 2.9842 4.1410 12 1 2.2542 3.8279 5.3442 13 1 3.6882 2.1619 6.3683 14 6 2.9481 -1.6595 1.0825 15 8 3.4504 -2.1395 2.0794 16 6 3.3626 -2.1353 -0.2587 17 6 4.5580 -2.8425 -0.4019 18 6 4.9347 -3.2877 -1.6586 19 6 4.1110 -3.0037 -2.7363 20 6 2.9319 -2.2876 -2.5235 21 6 2.0445 -1.9783 -3.6697 22 8 2.2818 -2.4470 -4.7655 23 7 0.9744 -1.1775 -3.4967 24 6 0.6806 -0.3885 -2.2915 25 6 -0.6522 0.3486 -2.5399 26 6 -1.3235 -0.5134 -3.6416 27 6 -0.0987 -0.9525 -4.4823 28 7 2.5984 -1.8808 -1.3088 29 1 -0.3634 0.1086 1.0219 30 1 -0.3633 0.8308 -0.6050 31 1 -0.3634 -0.9392 -0.4169 32 1 1.8933 -0.5138 -0.8899 33 1 3.1253 1.4441 -0.1013 34 1 1.5963 1.9847 -0.8351 35 1 1.7617 1.9263 0.9362 36 1 0.4686 0.0227 2.4163 37 1 1.5201 -1.2005 3.1687 38 1 0.8051 1.1590 5.9037 39 1 5.1797 -3.0439 0.4579 40 1 5.8524 -3.8403 -1.7961 41 1 4.3784 -3.3325 -3.7297 42 1 0.5859 -1.0493 -1.4298 43 1 1.4764 0.3363 -2.1198 44 1 -0.4753 1.3627 -2.8980 45 1 -1.2593 0.3585 -1.6346 46 1 -2.0133 0.0833 -4.2384 47 1 -1.8297 -1.3761 -3.2085 48 1 0.1854 -0.1641 -5.1791 49 1 -0.3175 -1.8740 -5.0218 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433635470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:17 Heat of formation + Delta-G solvation = 46.875432 kcal Electronic energy + Delta-G solvation = -32657.663442 eV Core-core repulsion = 28588.160811 eV Total energy + Delta-G solvation = -4069.502630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55563 -40.79380 -40.18791 -38.84668 -37.54696 -35.06140 -34.19274 -33.36951 -33.05463 -32.03241 -29.83704 -29.43339 -27.69589 -26.44903 -26.06722 -24.59988 -24.01556 -22.85887 -22.33040 -21.36916 -19.76183 -19.06358 -18.62317 -18.19646 -17.61128 -17.42522 -17.05681 -16.63480 -16.45898 -16.29513 -16.06864 -15.59030 -15.44841 -15.01145 -14.82215 -14.63381 -14.36270 -14.19974 -14.06868 -13.91297 -13.64126 -13.36067 -13.28846 -13.22660 -13.05736 -12.77591 -12.72437 -12.53690 -12.28925 -12.13019 -12.07957 -11.77225 -11.64644 -11.45000 -11.35850 -11.21069 -11.02391 -10.95915 -10.57674 -10.45712 -9.98675 -9.53157 -9.38229 -8.18206 -6.29325 -0.62912 -0.27414 1.35402 1.36702 1.38785 1.49632 1.80941 1.91359 2.15517 2.41081 2.59303 2.80916 3.11370 3.35918 3.64146 3.72319 3.76572 3.85123 3.86760 4.05227 4.12557 4.21269 4.33203 4.36664 4.38783 4.56444 4.66492 4.72286 4.78599 4.85513 4.86636 4.90505 4.93803 4.98491 5.02184 5.06426 5.11697 5.14768 5.19755 5.21438 5.28317 5.39128 5.46902 5.53308 5.57580 5.72721 5.93834 6.11880 6.21774 6.35457 6.72509 6.79422 6.92311 7.22907 7.41787 8.88986 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.004192 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.749676 B = 6678.308105 C = 8257.264832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 C -0.160 4.160 4 N -0.570 5.570 5 C 0.256 3.744 6 C -0.524 4.524 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.959 3.041 11 H -0.270 1.270 12 H -0.271 1.271 13 H -0.283 1.283 14 C 0.544 3.456 15 O -0.578 6.578 16 C 0.071 3.929 17 C -0.094 4.094 18 C -0.057 4.057 19 C -0.086 4.086 20 C 0.056 3.944 21 C 0.583 3.417 22 O -0.560 6.560 23 N -0.602 5.602 24 C 0.055 3.945 25 C -0.151 4.151 26 C -0.124 4.124 27 C 0.097 3.903 28 N -0.429 5.429 29 H 0.040 0.960 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.190 0.810 33 H 0.032 0.968 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.040 0.960 37 H -0.006 1.006 38 H 0.265 0.735 39 H 0.155 0.845 40 H 0.198 0.802 41 H 0.174 0.826 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 -2.892 -21.569 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.054 4.054 3 C -0.217 4.217 4 N -0.298 5.298 5 C 0.135 3.865 6 C -0.562 4.562 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.784 3.216 11 H -0.195 1.195 12 H -0.196 1.196 13 H -0.209 1.209 14 C 0.330 3.670 15 O -0.459 6.459 16 C -0.069 4.069 17 C -0.115 4.115 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.083 4.083 21 C 0.370 3.630 22 O -0.439 6.439 23 N -0.333 5.333 24 C -0.066 4.066 25 C -0.188 4.188 26 C -0.162 4.162 27 C -0.024 4.024 28 N -0.144 5.144 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.093 0.907 32 H 0.204 0.796 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.012 0.988 38 H 0.074 0.926 39 H 0.173 0.827 40 H 0.215 0.785 41 H 0.191 0.809 42 H 0.132 0.868 43 H 0.091 0.909 44 H 0.112 0.888 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.309 -2.892 -21.357 21.591 hybrid contribution 1.171 0.312 1.304 1.780 sum -0.138 -2.580 -20.052 20.218 Atomic orbital electron populations 1.23255 0.94556 1.03469 1.02694 1.24114 0.95988 0.94606 0.90720 1.22225 0.99844 0.96983 1.02698 1.48269 1.38165 1.33840 1.09561 1.18902 0.94627 0.94076 0.78905 1.21618 1.13039 1.19184 1.02380 0.93159 1.25735 0.96528 0.99458 0.97132 1.70051 1.28952 1.43956 1.13798 0.85490 0.78863 0.79076 0.78122 1.19491 1.19574 1.20910 1.18412 0.80218 0.80742 0.87584 1.90731 1.55760 1.60408 1.38966 1.21175 0.94543 0.99607 0.91533 1.22520 0.94762 0.93582 1.00665 1.22102 1.00701 0.96083 0.89356 1.22557 0.91757 0.93897 1.02472 1.21403 0.96218 0.99739 0.90977 1.17532 0.80281 0.78688 0.86501 1.90756 1.72714 1.54944 1.25506 1.48572 1.22252 1.43430 1.19063 1.24341 0.98686 0.95821 0.87745 1.23306 0.94668 0.99772 1.01070 1.22816 0.95907 1.00539 0.96945 1.22527 0.86340 1.01721 0.91804 1.67143 1.31146 1.17228 0.98848 0.94143 0.86804 0.90660 0.79555 0.94911 0.89349 0.93156 0.94211 0.98782 0.92585 0.82705 0.78510 0.80863 0.86785 0.90895 0.88829 0.87240 0.87169 0.90566 0.90293 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.18 6.58 71.98 0.47 -4.71 16 2 C 0.05 1.56 1.65 44.99 0.07 1.64 16 3 C -0.16 -5.28 8.33 71.98 0.60 -4.68 16 4 N -0.57 -25.05 2.39 -805.11 -1.92 -26.97 16 5 C 0.26 13.68 4.75 85.63 0.41 14.09 16 6 C -0.52 -29.82 7.78 25.60 0.20 -29.63 16 7 H 0.05 2.89 7.51 -2.91 -0.02 2.87 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 10 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 14 C 0.54 23.99 7.59 86.90 0.66 24.65 16 15 O -0.58 -30.14 16.12 -3.77 -0.06 -30.20 16 16 C 0.07 2.34 6.50 42.06 0.27 2.62 16 17 C -0.09 -2.43 9.63 22.68 0.22 -2.21 16 18 C -0.06 -0.98 10.16 22.43 0.23 -0.75 16 19 C -0.09 -1.69 9.63 22.68 0.22 -1.47 16 20 C 0.06 1.44 6.68 42.05 0.28 1.72 16 21 C 0.58 15.36 7.80 86.90 0.68 16.04 16 22 O -0.56 -16.66 16.68 -3.76 -0.06 -16.73 16 23 N -0.60 -13.52 3.33 -814.77 -2.71 -16.23 16 24 C 0.05 1.15 3.06 86.73 0.27 1.42 16 25 C -0.15 -2.16 5.42 31.78 0.17 -1.98 16 26 C -0.12 -1.50 7.08 31.99 0.23 -1.27 16 27 C 0.10 1.64 6.88 86.85 0.60 2.24 16 28 N -0.43 -12.53 4.63 -174.09 -0.81 -13.34 16 29 H 0.04 1.41 5.53 -2.39 -0.01 1.40 16 30 H 0.11 2.38 4.45 -2.38 -0.01 2.37 16 31 H 0.07 1.92 5.77 -2.39 -0.01 1.91 16 32 H 0.19 5.65 0.89 -86.08 -0.08 5.57 16 33 H 0.03 1.12 8.14 -2.38 -0.02 1.11 16 34 H 0.09 2.16 7.42 -2.39 -0.02 2.15 16 35 H 0.05 2.00 6.54 -2.39 -0.02 1.98 16 36 H 0.04 2.14 5.65 -2.39 -0.01 2.12 16 37 H -0.01 -0.37 7.53 -2.39 -0.02 -0.38 16 38 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.16 3.95 7.74 -2.91 -0.02 3.93 16 40 H 0.20 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.17 2.68 7.65 -2.91 -0.02 2.66 16 42 H 0.11 2.88 2.58 -2.39 -0.01 2.87 16 43 H 0.07 1.66 5.15 -2.39 -0.01 1.64 16 44 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.11 1.51 5.16 -2.39 -0.01 1.50 16 46 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.07 1.29 8.13 -2.38 -0.02 1.27 16 Total: -1.00 -77.56 367.08 3.72 -73.84 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.93 Total: 19.03 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.03 Total: 18.74 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -5.15 Total: -111.68 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.12 Total: -46.93 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -77.56 3.72 -73.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433635470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.715 kcal (2) G-P(sol) polarization free energy of solvation -77.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds