Wall clock time and date at job start Wed Apr 1 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.09009 * 110.85724 * 303.78284 * 16 14 13 18 18 C 1.54627 * 110.97194 * 67.61802 * 16 14 13 19 19 C 1.51285 * 104.19253 * 93.32268 * 18 16 14 20 20 O 1.21280 * 124.93577 * 196.25098 * 19 18 16 21 21 N 1.34415 * 110.11918 * 16.24921 * 19 18 16 22 22 C 1.46501 * 124.34806 * 180.38841 * 21 19 18 23 23 C 1.53005 * 109.47199 * 270.02437 * 22 21 19 24 24 C 1.46763 * 111.29930 * 0.41071 * 21 19 18 25 25 H 1.09004 * 110.24434 * 223.97631 * 24 21 19 26 26 C 1.50698 * 110.24517 * 101.98443 * 24 21 19 27 27 C 1.38678 * 120.41929 * 143.94826 * 26 24 21 28 28 C 1.38629 * 118.41761 * 180.02562 * 27 26 24 29 29 C 1.38220 * 119.16656 * 0.02562 * 28 27 26 30 30 N 1.31865 * 120.76204 * 359.97438 * 29 28 27 31 31 C 1.31887 * 121.72372 * 359.70857 * 30 29 28 32 32 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 33 33 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 35 35 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 36 36 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 37 37 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 38 38 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 39 39 H 1.09002 * 110.48593 * 211.99270 * 18 16 14 40 40 H 1.08989 * 110.48510 * 334.64151 * 18 16 14 41 41 H 1.09002 * 109.46789 * 30.02318 * 22 21 19 42 42 H 1.08995 * 109.46969 * 150.02361 * 22 21 19 43 43 H 1.08997 * 109.47199 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46793 * 300.00347 * 23 22 21 45 45 H 1.09002 * 109.46722 * 59.99649 * 23 22 21 46 46 H 1.07998 * 120.78558 * 359.97438 * 27 26 24 47 47 H 1.08003 * 120.41382 * 179.97438 * 28 27 26 48 48 H 1.08000 * 119.62407 * 179.97438 * 29 28 27 49 49 H 1.07995 * 119.61620 * 180.30713 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5975 0.1468 -0.2350 11 1 6.3977 0.2174 -2.6511 12 1 6.4996 2.2810 -1.3822 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3413 2.6275 0.4362 16 6 0.0325 3.3279 2.6587 17 1 0.1227 2.6378 3.4978 18 6 0.8660 4.6074 2.9013 19 6 0.0227 5.7167 2.3123 20 8 0.4264 6.8286 2.0445 21 7 -1.2389 5.2908 2.1289 22 6 -2.3149 6.1113 1.5675 23 6 -3.0349 6.8507 2.6970 24 6 -1.4000 3.8984 2.5638 25 1 -1.9811 3.3390 1.8305 26 6 -2.0720 3.8475 3.9117 27 6 -2.9683 2.8326 4.2116 28 6 -3.5629 2.8263 5.4638 29 6 -3.2454 3.8248 6.3653 30 7 -2.3883 4.7745 6.0457 31 6 -1.7991 4.8086 4.8662 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 3.8292 -0.0614 -2.9499 38 1 2.2722 2.1230 1.9978 39 1 1.0161 4.7682 3.9689 40 1 1.8242 4.5418 2.3860 41 1 -1.8936 6.8352 0.8699 42 1 -3.0239 5.4710 1.0426 43 1 -3.8351 7.4615 2.2793 44 1 -3.4561 6.1267 3.3946 45 1 -2.3258 7.4909 3.2219 46 1 -3.1981 2.0660 3.4864 47 1 -4.2660 2.0513 5.7313 48 1 -3.7046 3.8273 7.3428 49 1 -1.0987 5.5996 4.6422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433888787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:36 Heat of formation + Delta-G solvation = -36.681836 kcal Electronic energy + Delta-G solvation = -31612.610389 eV Core-core repulsion = 27539.484444 eV Total energy + Delta-G solvation = -4073.125945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.52216 -39.88510 -38.82276 -36.60064 -35.11856 -34.09414 -32.87987 -32.40168 -31.55947 -30.99075 -29.64630 -27.59620 -27.01176 -24.57433 -23.80153 -23.16956 -23.00796 -21.90163 -20.24835 -19.43387 -19.35398 -17.89859 -17.42493 -16.83972 -16.48781 -16.13190 -15.59589 -15.47271 -15.06099 -14.87501 -14.64429 -14.38820 -14.18780 -14.00805 -13.63894 -13.50237 -13.38287 -13.30748 -13.02729 -12.72839 -12.61161 -12.23046 -11.97000 -11.91891 -11.74726 -11.68472 -11.45810 -11.29258 -11.20437 -11.03335 -10.85965 -10.38101 -10.25071 -10.07562 -9.80700 -9.76887 -9.70315 -9.36685 -9.12391 -9.04790 -8.82433 -8.54878 -7.93787 -6.16770 -4.26504 0.78013 1.00176 2.56073 2.86814 3.14317 3.23607 3.29222 3.30312 3.47775 3.80072 4.17111 4.24145 4.30990 4.31838 4.51999 4.61128 4.69865 4.77479 4.82134 4.94759 5.08559 5.14902 5.15779 5.23106 5.27910 5.36983 5.43938 5.51770 5.59368 5.67223 5.68795 5.79747 5.84811 5.94426 6.03527 6.30812 6.36145 6.38991 6.50181 6.56853 6.94689 7.04592 7.10712 7.27050 7.34225 7.54556 7.65503 7.69997 7.83179 8.11772 8.14193 8.54305 8.70209 8.98974 9.40855 10.88454 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003132 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.757780 B = 8938.903822 C = 9619.480226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.510 3.490 15 O -0.540 6.540 16 C -0.118 4.118 17 H 0.118 0.882 18 C -0.150 4.150 19 C 0.521 3.479 20 O -0.527 6.527 21 N -0.605 5.605 22 C 0.125 3.875 23 C -0.168 4.168 24 C 0.193 3.807 25 H 0.119 0.881 26 C -0.147 4.147 27 C -0.061 4.061 28 C -0.171 4.171 29 C 0.095 3.905 30 N -0.484 5.484 31 C 0.118 3.882 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.037 0.963 35 H 0.100 0.900 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.389 0.611 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.139 0.861 47 H 0.136 0.864 48 H 0.155 0.845 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.761 4.374 14.824 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.349 5.349 14 C 0.293 3.707 15 O -0.418 6.418 16 C -0.140 4.140 17 H 0.136 0.864 18 C -0.190 4.190 19 C 0.309 3.691 20 O -0.403 6.403 21 N -0.338 5.338 22 C 0.003 3.997 23 C -0.226 4.226 24 C 0.088 3.912 25 H 0.136 0.864 26 C -0.150 4.150 27 C -0.087 4.087 28 C -0.191 4.191 29 C -0.061 4.061 30 N -0.192 5.192 31 C -0.039 4.039 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.118 0.882 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.222 0.778 39 H 0.129 0.871 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.172 0.828 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.924 5.543 14.349 20.748 hybrid contribution 1.026 -0.867 -0.291 1.375 sum -12.898 4.676 14.058 19.643 Atomic orbital electron populations 1.21837 0.98396 0.98043 1.01100 1.21943 0.92567 0.99781 1.02394 1.18806 0.94292 0.89128 0.80750 0.93262 1.21181 0.90638 1.39261 1.06412 0.92083 1.24871 0.98632 0.94721 0.95341 1.69872 1.35279 1.37439 1.09325 0.86520 0.84808 0.78398 0.77474 1.20129 1.21132 1.20123 1.46467 1.14141 1.55564 1.18708 1.19797 0.83280 0.79460 0.88131 1.90683 1.51485 1.59712 1.39949 1.22395 0.94204 0.97709 0.99730 0.86397 1.22433 1.00406 0.92293 1.03887 1.20777 0.82643 0.88337 0.77315 1.90727 1.75534 1.21937 1.52060 1.48205 1.10156 1.12981 1.62410 1.21334 0.88562 0.94193 0.95606 1.22215 1.00610 1.00570 0.99251 1.20270 0.95752 0.82932 0.92290 0.86381 1.21147 0.99192 0.97220 0.97420 1.21511 0.93482 0.96900 0.96810 1.22145 1.01672 1.00649 0.94625 1.22817 0.93847 0.90005 0.99466 1.67752 1.08009 1.24280 1.19140 1.22549 0.96541 0.96754 0.88063 0.93146 0.95850 0.94396 0.88230 0.94983 0.92465 0.77825 0.87055 0.86724 0.89784 0.90157 0.91547 0.92636 0.92221 0.84303 0.84584 0.82813 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.51 37.16 0.32 -2.48 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.43 2.24 -69.09 -0.15 6.27 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.07 11.29 55.43 0.63 -23.45 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -13.07 4.95 -54.94 -0.27 -13.34 16 14 C 0.51 8.74 5.64 -10.99 -0.06 8.67 16 15 O -0.54 -11.03 12.66 5.55 0.07 -10.96 16 16 C -0.12 -1.45 3.05 -90.14 -0.28 -1.72 16 17 H 0.12 1.17 7.89 -51.92 -0.41 0.76 16 18 C -0.15 -1.83 5.91 -26.74 -0.16 -1.98 16 19 C 0.52 7.76 6.92 -10.86 -0.08 7.68 16 20 O -0.53 -9.67 17.60 5.56 0.10 -9.57 16 21 N -0.60 -7.75 2.04 -166.19 -0.34 -8.09 16 22 C 0.12 1.42 6.64 -4.04 -0.03 1.39 16 23 C -0.17 -1.66 9.66 37.16 0.36 -1.30 16 24 C 0.19 2.24 2.69 -68.16 -0.18 2.06 16 25 H 0.12 1.50 6.95 -51.93 -0.36 1.14 16 26 C -0.15 -1.45 4.34 -104.48 -0.45 -1.91 16 27 C -0.06 -0.52 9.85 -39.27 -0.39 -0.90 16 28 C -0.17 -1.27 10.11 -39.44 -0.40 -1.67 16 29 C 0.10 0.81 11.18 -17.54 -0.20 0.61 16 30 N -0.48 -5.26 10.36 -13.25 -0.14 -5.40 16 31 C 0.12 1.26 8.61 -17.55 -0.15 1.11 16 32 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.73 5.63 -51.93 -0.29 0.43 16 35 H 0.10 2.56 5.95 -51.93 -0.31 2.26 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.39 6.25 8.54 -40.82 -0.35 5.90 16 39 H 0.11 1.05 8.04 -51.93 -0.42 0.63 16 40 H 0.11 1.51 7.84 -51.94 -0.41 1.10 16 41 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.56 6.47 -51.93 -0.34 0.22 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 48 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.15 1.65 6.41 -52.49 -0.34 1.31 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -31.80 392.58 -8.80 -40.60 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -7.35 Total: 8.56 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.39 Total: 0.52 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.12 Total: -50.28 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.52 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.80 -8.80 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433888787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.917 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds