Wall clock time and date at job start Wed Apr 1 2020 02:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47495 * 2 1 4 4 H 1.08999 * 109.46965 * 304.99930 * 3 2 1 5 5 C 1.50696 * 109.46890 * 185.00337 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99837 * 5 3 2 7 7 C 1.37881 * 120.00447 * 59.99907 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.47150 * 60.00100 * 9 7 5 11 11 H 1.48498 * 109.47193 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47405 * 300.00440 * 9 7 5 13 13 N 1.46499 * 109.47136 * 65.00280 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27771 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 H 1.09009 * 110.85724 * 303.78284 * 16 14 13 18 18 C 1.54627 * 110.97194 * 67.61802 * 16 14 13 19 19 C 1.51285 * 104.19253 * 93.32268 * 18 16 14 20 20 O 1.21280 * 124.93577 * 196.25098 * 19 18 16 21 21 N 1.34415 * 110.11918 * 16.24921 * 19 18 16 22 22 C 1.46501 * 124.34806 * 180.38841 * 21 19 18 23 23 C 1.53005 * 109.47199 * 270.02437 * 22 21 19 24 24 C 1.46763 * 111.29930 * 0.41071 * 21 19 18 25 25 H 1.09004 * 110.24434 * 223.97631 * 24 21 19 26 26 C 1.50698 * 110.24517 * 101.98443 * 24 21 19 27 27 C 1.38678 * 120.41929 * 143.94826 * 26 24 21 28 28 C 1.38629 * 118.41761 * 180.02562 * 27 26 24 29 29 C 1.38220 * 119.16656 * 0.02562 * 28 27 26 30 30 N 1.31865 * 120.76204 * 359.97438 * 29 28 27 31 31 C 1.31887 * 121.72372 * 359.70857 * 30 29 28 32 32 H 1.08998 * 109.46763 * 59.99672 * 1 2 3 33 33 H 1.08995 * 109.47461 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.46725 * 300.00105 * 1 2 3 35 35 H 1.09001 * 109.46725 * 239.99895 * 2 1 3 36 36 H 1.08999 * 109.47141 * 120.00715 * 2 1 3 37 37 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 38 38 H 0.97001 * 119.99790 * 94.99484 * 13 3 2 39 39 H 1.09002 * 110.48593 * 211.99270 * 18 16 14 40 40 H 1.08989 * 110.48510 * 334.64151 * 18 16 14 41 41 H 1.09002 * 109.46789 * 30.02318 * 22 21 19 42 42 H 1.08995 * 109.46969 * 150.02361 * 22 21 19 43 43 H 1.08997 * 109.47199 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.46793 * 300.00347 * 23 22 21 45 45 H 1.09002 * 109.46722 * 59.99649 * 23 22 21 46 46 H 1.07998 * 120.78558 * 359.97438 * 27 26 24 47 47 H 1.08003 * 120.41382 * 179.97438 * 28 27 26 48 48 H 1.08000 * 119.62407 * 179.97438 * 29 28 27 49 49 H 1.07995 * 119.61620 * 180.30713 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8886 0.6522 7 6 4.1433 0.8781 -1.2281 8 7 3.4062 0.3364 -2.1729 9 14 6.0049 0.8809 -1.3819 10 1 6.5975 0.1468 -0.2350 11 1 6.3977 0.2174 -2.6511 12 1 6.4996 2.2810 -1.3822 13 7 1.6527 2.0974 1.2518 14 6 0.4333 2.6595 1.3689 15 8 -0.3413 2.6275 0.4362 16 6 0.0325 3.3279 2.6587 17 1 0.1227 2.6378 3.4978 18 6 0.8660 4.6074 2.9013 19 6 0.0227 5.7167 2.3123 20 8 0.4264 6.8286 2.0445 21 7 -1.2389 5.2908 2.1289 22 6 -2.3149 6.1113 1.5675 23 6 -3.0349 6.8507 2.6970 24 6 -1.4000 3.8984 2.5638 25 1 -1.9811 3.3390 1.8305 26 6 -2.0720 3.8475 3.9117 27 6 -2.9683 2.8326 4.2116 28 6 -3.5629 2.8263 5.4638 29 6 -3.2454 3.8248 6.3653 30 7 -2.3883 4.7745 6.0457 31 6 -1.7991 4.8086 4.8662 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 3.8292 -0.0614 -2.9499 38 1 2.2722 2.1230 1.9978 39 1 1.0161 4.7682 3.9689 40 1 1.8242 4.5418 2.3860 41 1 -1.8936 6.8352 0.8699 42 1 -3.0239 5.4710 1.0426 43 1 -3.8351 7.4615 2.2793 44 1 -3.4561 6.1267 3.3946 45 1 -2.3258 7.4909 3.2219 46 1 -3.1981 2.0660 3.4864 47 1 -4.2660 2.0513 5.7313 48 1 -3.7046 3.8273 7.3428 49 1 -1.0987 5.5996 4.6422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433888787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:35 Heat of formation + Delta-G solvation = -56.793072 kcal Electronic energy + Delta-G solvation = -31613.482478 eV Core-core repulsion = 27539.484444 eV Total energy + Delta-G solvation = -4073.998034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.53448 -40.75954 -40.21684 -37.81172 -36.80445 -35.13354 -34.27291 -33.56659 -32.75145 -32.17993 -30.72361 -28.95558 -28.44252 -25.73902 -24.76700 -24.45488 -24.04042 -22.90926 -21.78461 -21.01398 -20.43915 -19.20076 -18.41395 -17.88022 -17.54766 -17.31305 -17.21695 -16.58798 -16.46219 -16.03749 -15.91673 -15.65415 -15.19855 -15.02301 -14.69286 -14.59983 -14.50737 -14.46378 -14.07892 -13.95412 -13.76833 -13.52031 -13.20356 -13.15165 -13.08067 -12.94097 -12.78644 -12.73316 -12.64155 -12.53186 -12.16978 -12.11174 -12.00826 -11.53907 -11.04328 -10.98834 -10.79442 -10.61780 -10.48731 -10.47958 -10.00859 -9.78805 -9.60867 -8.15287 -6.31787 0.10086 0.34925 1.41783 1.45054 1.46565 1.53628 1.76738 1.89014 2.33109 2.53525 2.82553 3.14394 3.22660 3.29249 3.43396 3.67025 3.72893 3.94998 4.01841 4.04141 4.09156 4.16873 4.25256 4.33019 4.43058 4.53700 4.54570 4.59593 4.63136 4.70048 4.72434 4.77177 4.81570 4.82749 4.89761 5.10836 5.17558 5.22502 5.25022 5.31279 5.47879 5.52927 5.59739 5.63756 5.76475 5.83538 5.94422 5.99220 6.20607 6.76582 6.97674 7.01598 7.03388 7.35008 7.57158 8.89376 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.003132 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.757780 B = 8938.903822 C = 9619.480226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.700 5.700 14 C 0.508 3.492 15 O -0.574 6.574 16 C -0.103 4.103 17 H 0.154 0.846 18 C -0.143 4.143 19 C 0.510 3.490 20 O -0.572 6.572 21 N -0.603 5.603 22 C 0.118 3.882 23 C -0.154 4.154 24 C 0.199 3.801 25 H 0.110 0.890 26 C -0.148 4.148 27 C -0.061 4.061 28 C -0.160 4.160 29 C 0.092 3.908 30 N -0.509 5.509 31 C 0.111 3.889 32 H 0.023 0.977 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.264 0.736 38 H 0.404 0.596 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.153 0.847 47 H 0.168 0.832 48 H 0.180 0.820 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 3.313 17.665 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.201 1.201 13 N -0.349 5.349 14 C 0.294 3.706 15 O -0.455 6.455 16 C -0.125 4.125 17 H 0.172 0.828 18 C -0.183 4.183 19 C 0.299 3.701 20 O -0.452 6.452 21 N -0.334 5.334 22 C -0.003 4.003 23 C -0.212 4.212 24 C 0.094 3.906 25 H 0.128 0.872 26 C -0.152 4.152 27 C -0.088 4.088 28 C -0.180 4.180 29 C -0.065 4.065 30 N -0.218 5.218 31 C -0.045 4.045 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.163 0.837 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.171 0.829 47 H 0.185 0.815 48 H 0.197 0.803 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.850 4.471 17.234 23.185 hybrid contribution 1.188 -0.529 -1.167 1.747 sum -13.662 3.943 16.067 21.455 Atomic orbital electron populations 1.21672 0.96605 0.99194 1.00471 1.21775 0.94094 0.98884 1.01292 1.18326 0.93331 0.89292 0.81294 0.98572 1.21581 0.91747 1.38747 1.06622 0.91084 1.25699 1.02896 0.94527 0.95161 1.70029 1.36947 1.38388 1.09820 0.85522 0.79702 0.78285 0.77583 1.18746 1.21360 1.20054 1.46200 1.15297 1.55804 1.17586 1.20555 0.82122 0.78500 0.89420 1.90676 1.52351 1.60695 1.41765 1.22328 0.94589 0.97885 0.97652 0.82810 1.22462 0.99270 0.90942 1.05647 1.21265 0.83529 0.88333 0.77008 1.90693 1.76455 1.23840 1.54236 1.48352 1.09943 1.13622 1.61509 1.21473 0.88498 0.94238 0.96127 1.22076 1.00412 1.00260 0.98429 1.20228 0.95252 0.81765 0.93323 0.87225 1.20846 1.00193 0.98125 0.95995 1.21751 0.92776 0.96561 0.97679 1.22465 1.01212 1.00711 0.93591 1.23327 0.92978 0.89441 1.00746 1.67747 1.09126 1.25626 1.19283 1.22361 0.96925 0.96786 0.88468 0.95750 0.93689 0.92970 0.91375 0.93850 0.92700 0.76055 0.83675 0.87656 0.91438 0.88794 0.89714 0.92432 0.93787 0.82895 0.81490 0.80335 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 8.51 71.98 0.61 -4.37 16 2 C -0.12 -5.60 5.45 30.59 0.17 -5.43 16 3 C 0.28 13.58 2.24 44.24 0.10 13.68 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -28.05 8.73 25.60 0.22 -27.83 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -51.32 11.29 21.45 0.24 -51.08 16 9 Si 0.96 41.60 29.54 68.60 2.03 43.63 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 13 N -0.70 -25.81 4.95 -446.11 -2.21 -28.02 16 14 C 0.51 17.13 5.64 87.66 0.49 17.63 16 15 O -0.57 -23.77 12.66 -3.04 -0.04 -23.81 16 16 C -0.10 -2.34 3.05 -10.48 -0.03 -2.37 16 17 H 0.15 2.46 7.89 -2.38 -0.02 2.45 16 18 C -0.14 -3.33 5.91 30.59 0.18 -3.15 16 19 C 0.51 15.34 6.92 87.90 0.61 15.95 16 20 O -0.57 -21.83 17.60 -3.03 -0.05 -21.88 16 21 N -0.60 -15.39 2.04 -798.30 -1.62 -17.01 16 22 C 0.12 2.70 6.64 86.38 0.57 3.27 16 23 C -0.15 -2.94 9.66 71.98 0.70 -2.25 16 24 C 0.20 4.35 2.69 44.70 0.12 4.47 16 25 H 0.11 2.65 6.95 -2.38 -0.02 2.63 16 26 C -0.15 -2.59 4.34 -19.77 -0.09 -2.68 16 27 C -0.06 -0.83 9.85 22.47 0.22 -0.61 16 28 C -0.16 -1.71 10.11 22.36 0.23 -1.49 16 29 C 0.09 1.23 11.18 84.68 0.95 2.18 16 30 N -0.51 -9.92 10.36 -195.84 -2.03 -11.95 16 31 C 0.11 2.17 8.61 84.67 0.73 2.90 16 32 H 0.02 1.09 7.84 -2.39 -0.02 1.07 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.95 5.63 -2.39 -0.01 1.93 16 35 H 0.07 3.61 5.95 -2.39 -0.01 3.59 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.40 12.41 8.54 -92.71 -0.79 11.62 16 39 H 0.15 2.40 8.04 -2.39 -0.02 2.38 16 40 H 0.11 2.70 7.84 -2.39 -0.02 2.68 16 41 H 0.07 1.76 7.93 -2.39 -0.02 1.74 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.08 6.47 -2.39 -0.02 1.07 16 45 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 47 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 48 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 49 H 0.14 2.90 6.41 -2.91 -0.02 2.89 16 Total: -1.00 -72.56 392.58 2.72 -69.83 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.18 Total: 29.03 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.23 Total: 11.26 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -5.62 Total: -108.06 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -0.09 Total: -45.69 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -72.56 2.72 -69.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433888787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.042 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds