Wall clock time and date at job start Wed Apr 1 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46702 * 2 1 4 4 H 1.09005 * 109.47207 * 55.00182 * 3 2 1 5 5 C 1.50705 * 109.46846 * 174.99964 * 3 2 1 6 6 H 1.07998 * 119.99921 * 120.00291 * 5 3 2 7 7 C 1.37877 * 119.99871 * 299.99738 * 5 3 2 8 8 N 1.31514 * 120.00415 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47006 * 90.00505 * 9 7 5 11 11 H 1.48503 * 109.47085 * 210.00344 * 9 7 5 12 12 H 1.48499 * 109.47446 * 330.00227 * 9 7 5 13 13 N 1.46495 * 109.47141 * 294.99890 * 3 2 1 14 14 C 1.34776 * 120.00024 * 85.00486 * 13 3 2 15 15 O 1.21281 * 120.00101 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00130 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.88492 * 297.64154 * 16 14 13 18 18 C 1.54632 * 110.97053 * 61.44878 * 16 14 13 19 19 C 1.51284 * 104.19235 * 93.32278 * 18 16 14 20 20 O 1.21282 * 124.93962 * 196.23518 * 19 18 16 21 21 N 1.34418 * 110.11817 * 16.25497 * 19 18 16 22 22 C 1.46500 * 124.35102 * 180.40970 * 21 19 18 23 23 C 1.53006 * 109.46998 * 90.02261 * 22 21 19 24 24 C 1.46766 * 111.30145 * 0.66992 * 21 19 18 25 25 H 1.08997 * 110.24748 * 223.72084 * 24 21 19 26 26 C 1.50703 * 110.24210 * 101.71798 * 24 21 19 27 27 C 1.38671 * 120.41337 * 141.46046 * 26 24 21 28 28 C 1.38630 * 118.41801 * 180.02562 * 27 26 24 29 29 C 1.38230 * 119.15804 * 359.97438 * 28 27 26 30 30 N 1.31848 * 120.76756 * 0.02562 * 29 28 27 31 31 C 1.31890 * 121.72600 * 359.69796 * 30 29 28 32 32 H 1.09001 * 109.47098 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47329 * 299.99735 * 1 2 3 34 34 H 1.08994 * 109.47229 * 59.99995 * 1 2 3 35 35 H 1.08999 * 109.47329 * 240.00265 * 2 1 3 36 36 H 1.08994 * 109.47229 * 120.00005 * 2 1 3 37 37 H 0.96995 * 120.00219 * 179.97438 * 8 7 5 38 38 H 0.97006 * 120.00013 * 264.99741 * 13 3 2 39 39 H 1.09003 * 110.48519 * 334.64903 * 18 16 14 40 40 H 1.08997 * 110.49114 * 211.99607 * 18 16 14 41 41 H 1.09000 * 109.47175 * 330.02393 * 22 21 19 42 42 H 1.09001 * 109.47297 * 210.01900 * 22 21 19 43 43 H 1.09001 * 109.47002 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.46955 * 300.00226 * 23 22 21 45 45 H 1.09000 * 109.47050 * 60.00054 * 23 22 21 46 46 H 1.07999 * 120.79247 * 359.97438 * 27 26 24 47 47 H 1.07999 * 120.42213 * 179.97438 * 28 27 26 48 48 H 1.08008 * 119.61614 * 179.97438 * 29 28 27 49 49 H 1.07992 * 119.61713 * 180.31102 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3109 2.1546 12 1 6.6131 0.8396 0.0270 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3397 2.6319 -0.4344 16 6 0.0365 3.3386 -2.6544 17 1 0.6889 4.1854 -2.8677 18 6 0.0342 2.3323 -3.8284 19 6 -1.3948 1.8400 -3.8922 20 8 -1.7614 0.8461 -4.4827 21 7 -2.1993 2.6645 -3.1995 22 6 -3.6443 2.4760 -3.0490 23 6 -3.9213 1.6301 -1.8044 24 6 -1.4449 3.7814 -2.6184 25 1 -1.7606 3.9551 -1.5897 26 6 -1.6408 5.0277 -3.4427 27 6 -1.7654 6.2641 -2.8272 28 6 -1.9447 7.3833 -3.6253 29 6 -1.9924 7.2308 -4.9984 30 7 -1.8702 6.0391 -5.5492 31 6 -1.6932 4.9535 -4.8215 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.8293 -0.0616 2.9495 38 1 2.2719 2.1232 -1.9978 39 1 0.7138 1.5051 -3.6232 40 1 0.3079 2.8304 -4.7585 41 1 -4.0379 1.9674 -3.9290 42 1 -4.1283 3.4469 -2.9435 43 1 -4.9964 1.4902 -1.6922 44 1 -3.4372 0.6593 -1.9099 45 1 -3.5276 2.1387 -0.9244 46 1 -1.7246 6.3529 -1.7517 47 1 -2.0458 8.3620 -3.1800 48 1 -2.1322 8.0977 -5.6272 49 1 -1.5921 3.9950 -5.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433888805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:40 Heat of formation + Delta-G solvation = -37.452504 kcal Electronic energy + Delta-G solvation = -31749.583938 eV Core-core repulsion = 27676.424574 eV Total energy + Delta-G solvation = -4073.159364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.49802 -39.90334 -38.80394 -36.59927 -35.10262 -34.08768 -32.89526 -32.40769 -31.54689 -30.91735 -29.62701 -27.53697 -27.01786 -24.45867 -23.78405 -23.28964 -23.00584 -21.89845 -20.22982 -19.41505 -19.30094 -17.88022 -17.37766 -16.93874 -16.40931 -16.14377 -15.59019 -15.46151 -15.20425 -14.88005 -14.60748 -14.43258 -14.06970 -13.92758 -13.59887 -13.54427 -13.32392 -13.30505 -12.87016 -12.76319 -12.60779 -12.25907 -12.01856 -11.77478 -11.73897 -11.60475 -11.46027 -11.28990 -11.10027 -11.00708 -10.88533 -10.36472 -10.23529 -10.07982 -9.80974 -9.76790 -9.66979 -9.39169 -9.11172 -9.05459 -8.82673 -8.54841 -7.93148 -6.17234 -4.27068 0.77218 0.99820 2.53917 2.87245 3.15565 3.21246 3.28564 3.29919 3.47444 3.80168 4.16887 4.23934 4.27671 4.31772 4.51820 4.61048 4.69715 4.77554 4.81610 4.98614 5.12160 5.15599 5.18791 5.22914 5.35955 5.38400 5.44061 5.52211 5.64821 5.68453 5.70987 5.84823 5.90206 5.96000 6.26825 6.36523 6.38637 6.42248 6.51688 6.62223 7.00490 7.03927 7.13683 7.29329 7.35903 7.55949 7.66009 7.69437 7.83551 8.12717 8.12952 8.54706 8.69985 8.99215 9.40334 10.87943 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.003306 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.144294 B = 8468.131243 C = 9484.024996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.511 3.489 15 O -0.539 6.539 16 C -0.118 4.118 17 H 0.120 0.880 18 C -0.152 4.152 19 C 0.521 3.479 20 O -0.527 6.527 21 N -0.605 5.605 22 C 0.127 3.873 23 C -0.169 4.169 24 C 0.192 3.808 25 H 0.119 0.881 26 C -0.147 4.147 27 C -0.059 4.059 28 C -0.171 4.171 29 C 0.096 3.904 30 N -0.484 5.484 31 C 0.116 3.884 32 H 0.022 0.978 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.099 0.901 37 H 0.265 0.735 38 H 0.389 0.611 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.155 0.845 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 11.938 -11.126 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.349 5.349 14 C 0.294 3.706 15 O -0.418 6.418 16 C -0.140 4.140 17 H 0.138 0.862 18 C -0.192 4.192 19 C 0.309 3.691 20 O -0.403 6.403 21 N -0.338 5.338 22 C 0.005 3.995 23 C -0.227 4.227 24 C 0.086 3.914 25 H 0.137 0.863 26 C -0.151 4.151 27 C -0.086 4.086 28 C -0.191 4.191 29 C -0.061 4.061 30 N -0.192 5.192 31 C -0.042 4.042 32 H 0.041 0.959 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.222 0.778 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.158 0.842 47 H 0.155 0.845 48 H 0.172 0.828 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.751 11.152 -11.460 19.844 hybrid contribution 1.394 0.165 0.768 1.600 sum -10.357 11.317 -10.692 18.699 Atomic orbital electron populations 1.21811 0.98304 0.98087 1.01010 1.21938 0.92598 0.99760 1.02361 1.18809 0.94245 0.89167 0.80693 0.93233 1.21217 0.90649 1.39229 1.06339 0.92054 1.24876 0.98602 0.94719 0.95391 1.69886 1.35180 1.37441 1.09340 0.86464 0.84842 0.77660 0.78236 1.20577 1.21069 1.19816 1.46471 1.14261 1.55471 1.18719 1.19771 0.83133 0.79626 0.88048 1.90675 1.51233 1.59748 1.40142 1.22412 0.96377 0.99904 0.95321 0.86245 1.22465 0.96413 1.00849 0.99476 1.20772 0.88287 0.82503 0.77564 1.90727 1.80054 1.25242 1.44271 1.48254 1.08085 1.25225 1.52260 1.21315 0.78563 1.00333 0.99269 1.22139 1.01379 1.01023 0.98185 1.20298 0.90481 0.82852 0.97735 0.86287 1.21135 1.02479 0.95700 0.95743 1.21532 0.94552 0.91442 1.01049 1.22161 1.01936 0.99795 0.95185 1.22826 0.95068 0.95213 0.92966 1.67741 1.11700 0.98960 1.40802 1.22563 0.94311 0.97036 0.90244 0.95930 0.93253 0.94393 0.95008 0.88262 0.92521 0.77843 0.86883 0.87032 0.90132 0.90710 0.91799 0.92097 0.91578 0.84234 0.84536 0.82768 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.28 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.54 -13.50 8.73 -34.44 -0.30 -13.80 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.37 16 9 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -13.11 4.75 -54.93 -0.26 -13.37 16 14 C 0.51 8.73 5.73 -10.99 -0.06 8.67 16 15 O -0.54 -10.90 12.67 5.56 0.07 -10.83 16 16 C -0.12 -1.45 3.05 -90.04 -0.27 -1.72 16 17 H 0.12 1.21 7.89 -51.93 -0.41 0.80 16 18 C -0.15 -1.81 5.81 -26.74 -0.16 -1.96 16 19 C 0.52 7.57 6.93 -10.86 -0.08 7.50 16 20 O -0.53 -9.47 17.59 5.56 0.10 -9.38 16 21 N -0.61 -7.62 2.11 -166.08 -0.35 -7.97 16 22 C 0.13 1.43 6.65 -4.04 -0.03 1.40 16 23 C -0.17 -2.02 10.24 37.16 0.38 -1.64 16 24 C 0.19 2.21 2.75 -68.06 -0.19 2.03 16 25 H 0.12 1.52 6.89 -51.93 -0.36 1.16 16 26 C -0.15 -1.47 4.91 -104.48 -0.51 -1.98 16 27 C -0.06 -0.51 9.84 -39.28 -0.39 -0.90 16 28 C -0.17 -1.28 10.11 -39.44 -0.40 -1.68 16 29 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 30 N -0.48 -5.33 10.36 -13.25 -0.14 -5.47 16 31 C 0.12 1.24 10.20 -17.55 -0.18 1.06 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 34 H 0.04 0.81 5.64 -51.93 -0.29 0.51 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.39 6.30 8.36 -40.82 -0.34 5.96 16 39 H 0.11 1.44 7.51 -51.93 -0.39 1.05 16 40 H 0.11 1.03 7.84 -51.93 -0.41 0.62 16 41 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 48 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 49 H 0.15 1.62 6.19 -52.49 -0.32 1.29 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -31.62 395.94 -8.85 -40.47 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -7.39 Total: 9.18 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.45 Total: -0.26 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.12 Total: -50.17 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.17 Total: -20.21 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.62 -8.85 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433888805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.018 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds