Wall clock time and date at job start Wed Apr 1 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46702 * 2 1 4 4 H 1.09005 * 109.47207 * 55.00182 * 3 2 1 5 5 C 1.50705 * 109.46846 * 174.99964 * 3 2 1 6 6 H 1.07998 * 119.99921 * 120.00291 * 5 3 2 7 7 C 1.37877 * 119.99871 * 299.99738 * 5 3 2 8 8 N 1.31514 * 120.00415 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47006 * 90.00505 * 9 7 5 11 11 H 1.48503 * 109.47085 * 210.00344 * 9 7 5 12 12 H 1.48499 * 109.47446 * 330.00227 * 9 7 5 13 13 N 1.46495 * 109.47141 * 294.99890 * 3 2 1 14 14 C 1.34776 * 120.00024 * 85.00486 * 13 3 2 15 15 O 1.21281 * 120.00101 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00130 * 179.97438 * 14 13 3 17 17 H 1.09003 * 110.88492 * 297.64154 * 16 14 13 18 18 C 1.54632 * 110.97053 * 61.44878 * 16 14 13 19 19 C 1.51284 * 104.19235 * 93.32278 * 18 16 14 20 20 O 1.21282 * 124.93962 * 196.23518 * 19 18 16 21 21 N 1.34418 * 110.11817 * 16.25497 * 19 18 16 22 22 C 1.46500 * 124.35102 * 180.40970 * 21 19 18 23 23 C 1.53006 * 109.46998 * 90.02261 * 22 21 19 24 24 C 1.46766 * 111.30145 * 0.66992 * 21 19 18 25 25 H 1.08997 * 110.24748 * 223.72084 * 24 21 19 26 26 C 1.50703 * 110.24210 * 101.71798 * 24 21 19 27 27 C 1.38671 * 120.41337 * 141.46046 * 26 24 21 28 28 C 1.38630 * 118.41801 * 180.02562 * 27 26 24 29 29 C 1.38230 * 119.15804 * 359.97438 * 28 27 26 30 30 N 1.31848 * 120.76756 * 0.02562 * 29 28 27 31 31 C 1.31890 * 121.72600 * 359.69796 * 30 29 28 32 32 H 1.09001 * 109.47098 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47329 * 299.99735 * 1 2 3 34 34 H 1.08994 * 109.47229 * 59.99995 * 1 2 3 35 35 H 1.08999 * 109.47329 * 240.00265 * 2 1 3 36 36 H 1.08994 * 109.47229 * 120.00005 * 2 1 3 37 37 H 0.96995 * 120.00219 * 179.97438 * 8 7 5 38 38 H 0.97006 * 120.00013 * 264.99741 * 13 3 2 39 39 H 1.09003 * 110.48519 * 334.64903 * 18 16 14 40 40 H 1.08997 * 110.49114 * 211.99607 * 18 16 14 41 41 H 1.09000 * 109.47175 * 330.02393 * 22 21 19 42 42 H 1.09001 * 109.47297 * 210.01900 * 22 21 19 43 43 H 1.09001 * 109.47002 * 179.97438 * 23 22 21 44 44 H 1.08993 * 109.46955 * 300.00226 * 23 22 21 45 45 H 1.09000 * 109.47050 * 60.00054 * 23 22 21 46 46 H 1.07999 * 120.79247 * 359.97438 * 27 26 24 47 47 H 1.07999 * 120.42213 * 179.97438 * 28 27 26 48 48 H 1.08008 * 119.61614 * 179.97438 * 29 28 27 49 49 H 1.07992 * 119.61713 * 180.31102 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3109 2.1546 12 1 6.6131 0.8396 0.0270 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3397 2.6319 -0.4344 16 6 0.0365 3.3386 -2.6544 17 1 0.6889 4.1854 -2.8677 18 6 0.0342 2.3323 -3.8284 19 6 -1.3948 1.8400 -3.8922 20 8 -1.7614 0.8461 -4.4827 21 7 -2.1993 2.6645 -3.1995 22 6 -3.6443 2.4760 -3.0490 23 6 -3.9213 1.6301 -1.8044 24 6 -1.4449 3.7814 -2.6184 25 1 -1.7606 3.9551 -1.5897 26 6 -1.6408 5.0277 -3.4427 27 6 -1.7654 6.2641 -2.8272 28 6 -1.9447 7.3833 -3.6253 29 6 -1.9924 7.2308 -4.9984 30 7 -1.8702 6.0391 -5.5492 31 6 -1.6932 4.9535 -4.8215 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8899 37 1 3.8293 -0.0616 2.9495 38 1 2.2719 2.1232 -1.9978 39 1 0.7138 1.5051 -3.6232 40 1 0.3079 2.8304 -4.7585 41 1 -4.0379 1.9674 -3.9290 42 1 -4.1283 3.4469 -2.9435 43 1 -4.9964 1.4902 -1.6922 44 1 -3.4372 0.6593 -1.9099 45 1 -3.5276 2.1387 -0.9244 46 1 -1.7246 6.3529 -1.7517 47 1 -2.0458 8.3620 -3.1800 48 1 -2.1322 8.0977 -5.6272 49 1 -1.5921 3.9950 -5.3087 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433888805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:39 Heat of formation + Delta-G solvation = -56.978359 kcal Electronic energy + Delta-G solvation = -31750.430643 eV Core-core repulsion = 27676.424574 eV Total energy + Delta-G solvation = -4074.006069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50887 -40.76895 -40.19917 -37.79712 -36.80798 -35.14113 -34.27209 -33.56908 -32.81675 -32.14313 -30.75178 -28.89482 -28.45482 -25.68971 -24.71582 -24.47654 -24.21517 -22.91486 -21.82391 -20.99491 -20.36512 -19.19422 -18.30329 -18.02901 -17.57796 -17.27892 -17.10179 -16.60193 -16.51786 -16.08388 -15.98492 -15.60959 -15.17232 -14.93852 -14.72912 -14.63751 -14.53849 -14.39419 -14.19321 -13.95707 -13.65194 -13.53711 -13.25576 -13.18161 -13.09300 -12.87189 -12.84936 -12.72464 -12.67801 -12.49192 -12.16207 -12.09452 -12.05307 -11.59124 -11.04463 -10.96095 -10.80949 -10.62628 -10.49550 -10.48131 -10.02536 -9.80912 -9.61703 -8.14542 -6.31211 0.08516 0.33382 1.42690 1.45909 1.47128 1.56803 1.78525 1.90146 2.33466 2.54260 2.81610 3.15430 3.23807 3.27806 3.42902 3.67362 3.73298 3.94283 4.00807 4.04885 4.09389 4.17089 4.25197 4.33168 4.43600 4.47909 4.54035 4.55564 4.59029 4.70324 4.71552 4.75520 4.76633 4.84931 4.88742 5.06679 5.20421 5.21823 5.24556 5.27014 5.42059 5.53771 5.56600 5.64018 5.75260 5.79694 5.92771 6.00303 6.17975 6.77286 6.97712 7.01577 7.03469 7.35643 7.57125 8.90547 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.003306 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.144294 B = 8468.131243 C = 9484.024996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.121 4.121 3 C 0.283 3.717 4 H 0.004 0.996 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.261 1.261 13 N -0.702 5.702 14 C 0.508 3.492 15 O -0.572 6.572 16 C -0.104 4.104 17 H 0.152 0.848 18 C -0.145 4.145 19 C 0.511 3.489 20 O -0.570 6.570 21 N -0.603 5.603 22 C 0.124 3.876 23 C -0.162 4.162 24 C 0.199 3.801 25 H 0.109 0.891 26 C -0.149 4.149 27 C -0.062 4.062 28 C -0.161 4.161 29 C 0.092 3.908 30 N -0.510 5.510 31 C 0.108 3.892 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.264 0.736 38 H 0.404 0.596 39 H 0.107 0.893 40 H 0.146 0.854 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.030 0.970 45 H 0.052 0.948 46 H 0.152 0.848 47 H 0.168 0.832 48 H 0.181 0.819 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 14.405 -12.650 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.160 4.160 3 C 0.180 3.820 4 H 0.022 0.978 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.791 3.209 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.185 1.185 13 N -0.350 5.350 14 C 0.294 3.706 15 O -0.453 6.453 16 C -0.126 4.126 17 H 0.169 0.831 18 C -0.185 4.185 19 C 0.300 3.700 20 O -0.449 6.449 21 N -0.335 5.335 22 C 0.003 3.997 23 C -0.220 4.220 24 C 0.094 3.906 25 H 0.126 0.874 26 C -0.152 4.152 27 C -0.088 4.088 28 C -0.180 4.180 29 C -0.064 4.064 30 N -0.218 5.218 31 C -0.049 4.049 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.125 0.875 40 H 0.163 0.837 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.170 0.830 47 H 0.185 0.815 48 H 0.198 0.802 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.365 13.660 -13.008 22.022 hybrid contribution 1.174 -0.513 1.269 1.804 sum -10.191 13.148 -11.739 20.360 Atomic orbital electron populations 1.21621 0.97164 0.98582 1.00135 1.21795 0.93457 0.99693 1.01077 1.18309 0.93502 0.88762 0.81455 0.97804 1.21591 0.91527 1.38740 1.06549 0.90857 1.25723 1.02984 0.94462 0.95177 1.70039 1.36961 1.38417 1.09895 0.85434 0.79555 0.77328 0.78558 1.20323 1.21385 1.18497 1.46205 1.15469 1.55735 1.17616 1.20534 0.81944 0.78713 0.89364 1.90668 1.51965 1.60670 1.41957 1.22335 0.97575 1.00373 0.92298 0.83070 1.22502 0.94624 1.00664 1.00700 1.21216 0.89532 0.82067 0.77159 1.90698 1.80923 1.27043 1.46278 1.48383 1.08627 1.25124 1.51322 1.21438 0.78160 1.01450 0.98668 1.22071 1.02653 0.99268 0.97984 1.20223 0.89581 0.83265 0.97523 0.87366 1.20846 1.03955 0.95243 0.95181 1.21769 0.93940 0.91192 1.01912 1.22478 1.00138 1.00746 0.94659 1.23339 0.93951 0.95150 0.93998 1.67742 1.12738 0.99805 1.41563 1.22441 0.95103 0.96947 0.90388 0.94675 0.95174 0.94061 0.94528 0.91101 0.92716 0.76129 0.87484 0.83663 0.90340 0.88240 0.89303 0.95086 0.92910 0.83021 0.81487 0.80245 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.51 71.98 0.61 -4.68 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.69 2.24 44.25 0.10 13.79 16 4 H 0.00 0.23 7.58 -2.38 -0.02 0.22 16 5 C -0.55 -27.54 8.73 25.60 0.22 -27.32 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.13 11.29 21.45 0.24 -50.89 16 9 Si 0.97 40.96 29.54 68.60 2.03 42.99 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 13 N -0.70 -26.04 4.75 -446.10 -2.12 -28.16 16 14 C 0.51 17.24 5.73 87.66 0.50 17.74 16 15 O -0.57 -23.58 12.67 -3.03 -0.04 -23.62 16 16 C -0.10 -2.38 3.05 -10.42 -0.03 -2.41 16 17 H 0.15 2.57 7.89 -2.39 -0.02 2.55 16 18 C -0.14 -3.24 5.81 30.59 0.18 -3.07 16 19 C 0.51 14.73 6.93 87.90 0.61 15.34 16 20 O -0.57 -20.83 17.59 -3.04 -0.05 -20.89 16 21 N -0.60 -14.86 2.11 -797.93 -1.68 -16.54 16 22 C 0.12 2.72 6.65 86.38 0.57 3.30 16 23 C -0.16 -3.90 10.24 71.98 0.74 -3.16 16 24 C 0.20 4.33 2.75 44.76 0.12 4.46 16 25 H 0.11 2.67 6.89 -2.39 -0.02 2.65 16 26 C -0.15 -2.64 4.91 -19.77 -0.10 -2.73 16 27 C -0.06 -0.87 9.84 22.47 0.22 -0.65 16 28 C -0.16 -1.80 10.11 22.36 0.23 -1.57 16 29 C 0.09 1.27 11.18 84.69 0.95 2.22 16 30 N -0.51 -10.06 10.36 -195.84 -2.03 -12.09 16 31 C 0.11 2.10 10.20 84.67 0.86 2.97 16 32 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 1.43 7.85 -2.39 -0.02 1.42 16 34 H 0.04 1.80 5.64 -2.39 -0.01 1.78 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 37 H 0.26 14.07 8.31 -92.71 -0.77 13.29 16 38 H 0.40 12.57 8.36 -92.70 -0.77 11.79 16 39 H 0.11 2.59 7.51 -2.39 -0.02 2.57 16 40 H 0.15 2.29 7.84 -2.39 -0.02 2.28 16 41 H 0.08 1.78 7.92 -2.39 -0.02 1.76 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.17 0.84 8.06 -2.91 -0.02 0.81 16 48 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 49 H 0.14 2.87 6.19 -2.91 -0.02 2.85 16 Total: -1.00 -71.43 395.94 2.95 -68.49 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.19 Total: 30.89 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.40 Total: 9.82 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -5.58 Total: -107.68 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.09 Total: -44.51 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -71.43 2.95 -68.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433888805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.507 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds