Wall clock time and date at job start Wed Apr 1 2020 03:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47246 * 2 1 4 4 N 1.46495 * 109.46917 * 120.00122 * 2 1 3 5 5 C 1.46505 * 120.00083 * 299.99569 * 4 2 1 6 6 C 1.53001 * 109.47211 * 270.00492 * 5 4 2 7 7 N 1.46505 * 109.47211 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00083 * 89.99508 * 7 6 5 9 9 C 1.36938 * 119.99634 * 269.99816 * 7 6 5 10 10 H 1.08001 * 119.99753 * 23.04711 * 9 7 6 11 11 C 1.38805 * 119.99858 * 203.04195 * 9 7 6 12 12 N 1.31628 * 119.99974 * 12.92880 * 11 9 7 13 13 Si 1.86799 * 120.00095 * 192.92478 * 11 9 7 14 14 H 1.48496 * 109.47177 * 60.00375 * 13 11 9 15 15 H 1.48505 * 109.47113 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47271 * 300.00236 * 13 11 9 17 17 C 1.34772 * 120.00416 * 119.99969 * 4 2 1 18 18 O 1.21284 * 120.00522 * 179.97438 * 17 4 2 19 19 C 1.50702 * 119.99887 * 359.97438 * 17 4 2 20 20 C 1.50702 * 109.47575 * 180.02562 * 19 17 4 21 21 N 1.29741 * 126.29230 * 270.00080 * 20 19 17 22 22 O 1.41352 * 109.74172 * 179.97438 * 21 20 19 23 23 C 1.34826 * 109.32876 * 0.02562 * 22 21 20 24 24 C 1.38979 * 133.44466 * 180.02562 * 23 22 21 25 25 C 1.37801 * 119.78889 * 179.97438 * 24 23 22 26 26 C 1.38776 * 120.60598 * 0.02562 * 25 24 23 27 27 C 1.36628 * 120.51395 * 359.97438 * 26 25 24 28 28 C 1.39689 * 119.78837 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.46983 * 300.00215 * 1 2 3 30 30 H 1.09001 * 109.46815 * 60.00183 * 1 2 3 31 31 H 1.08993 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46983 * 239.99785 * 2 1 3 33 33 H 1.08992 * 109.46871 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47009 * 300.00116 * 3 2 1 35 35 H 1.08994 * 109.46860 * 59.99880 * 3 2 1 36 36 H 1.09003 * 109.47031 * 30.00388 * 5 4 2 37 37 H 1.08997 * 109.47221 * 150.00577 * 5 4 2 38 38 H 1.09003 * 109.47038 * 299.99892 * 6 5 4 39 39 H 1.08994 * 109.47233 * 59.99490 * 6 5 4 40 40 H 1.08997 * 109.46964 * 95.12453 * 8 7 6 41 41 H 1.09000 * 109.47140 * 215.12517 * 8 7 6 42 42 H 1.09000 * 109.47243 * 335.13161 * 8 7 6 43 43 H 0.97001 * 120.00072 * 179.97438 * 12 11 9 44 44 H 1.08996 * 109.47462 * 59.99563 * 19 17 4 45 45 H 1.09009 * 109.46886 * 300.00197 * 19 17 4 46 46 H 1.07997 * 120.10491 * 359.97323 * 24 23 22 47 47 H 1.08002 * 119.69409 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.74637 * 179.71955 * 26 25 24 49 49 H 1.07997 * 120.10987 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 2.7191 0.8170 2.9899 7 7 2.3649 1.3180 4.3203 8 6 2.8527 0.6277 5.5168 9 6 1.5777 2.4316 4.4453 10 1 0.9230 2.7235 3.6375 11 6 1.6213 3.1850 5.6103 12 7 2.5859 2.9901 6.4844 13 14 0.3111 4.4757 5.9374 14 1 -1.0237 3.8263 5.9800 15 1 0.5820 5.1371 7.2391 16 1 0.3337 5.4900 4.8531 17 6 2.7931 -1.7864 1.0726 18 8 3.1978 -2.3579 2.0628 19 6 3.1568 -2.3017 -0.2961 20 6 4.0228 -3.5273 -0.1579 21 7 5.3181 -3.5484 -0.0877 22 8 5.7678 -4.8826 0.0373 23 6 4.7055 -5.7129 0.0434 24 6 4.5715 -7.0927 0.1411 25 6 3.3169 -7.6621 0.1175 26 6 2.1837 -6.8702 -0.0035 27 6 2.2939 -5.5118 -0.1008 28 6 3.5565 -4.9146 -0.0790 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 0.6904 0.2974 2.4844 37 1 1.6239 -1.0226 3.2292 38 1 3.6931 0.3295 3.0323 39 1 2.7598 1.6494 2.2875 40 1 3.7662 1.1085 5.8665 41 1 2.0946 0.6758 6.2985 42 1 3.0603 -0.4148 5.2756 43 1 2.6166 3.5169 7.2984 44 1 3.7015 -1.5311 -0.8416 45 1 2.2482 -2.5587 -0.8408 46 1 5.4479 -7.7168 0.2351 47 1 3.2146 -8.7346 0.1931 48 1 1.2074 -7.3314 -0.0250 49 1 1.4077 -4.9018 -0.1952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486371837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:24 Heat of formation + Delta-G solvation = 58.341400 kcal Electronic energy + Delta-G solvation = -30532.875292 eV Core-core repulsion = 26463.869863 eV Total energy + Delta-G solvation = -4069.005429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99135 -40.04007 -37.97639 -36.90601 -35.41775 -34.70839 -32.08643 -31.27397 -30.91348 -30.33572 -30.01071 -27.81355 -27.21141 -25.77653 -23.77653 -23.41541 -22.94315 -22.09366 -21.00006 -20.33747 -18.66428 -17.80766 -17.61100 -17.32087 -16.57892 -16.02353 -15.87117 -15.72224 -15.42173 -14.78186 -14.41230 -14.13473 -14.10310 -14.00849 -13.69628 -13.45451 -13.36178 -13.09278 -12.75676 -12.56572 -12.50561 -12.41633 -12.22487 -12.12894 -11.92883 -11.55632 -11.48378 -11.41790 -11.26546 -11.13070 -10.93925 -10.82798 -10.76749 -10.50471 -10.14413 -9.91277 -9.70382 -9.69556 -9.21029 -8.88033 -8.72402 -8.41326 -6.69539 -5.69155 -3.17319 0.37296 0.99839 1.77119 2.29516 2.63433 3.05056 3.33540 3.38140 3.43674 3.44728 3.72800 3.99349 4.27703 4.38170 4.51380 4.60153 4.66985 4.75478 4.86004 4.88910 5.00349 5.01849 5.09371 5.14400 5.42778 5.44830 5.54979 5.57118 5.58931 5.70077 5.75956 5.78963 5.81750 5.85780 5.91167 6.03446 6.05074 6.20055 6.26885 6.32914 6.37054 6.56489 6.71920 6.90972 6.99581 7.04012 7.44193 7.52650 7.76956 7.83700 8.23324 8.42634 9.25783 9.89697 10.40193 11.35120 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002521 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.202734 B =11103.950021 C =11705.331662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 C -0.170 4.170 4 N -0.597 5.597 5 C 0.093 3.907 6 C 0.138 3.862 7 N -0.599 5.599 8 C 0.162 3.838 9 C -0.257 4.257 10 H 0.066 0.934 11 C 0.002 3.998 12 N -0.905 5.905 13 Si 0.904 3.096 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.283 1.283 17 C 0.515 3.485 18 O -0.525 6.525 19 C -0.076 4.076 20 C 0.155 3.845 21 N -0.272 5.272 22 O -0.091 6.091 23 C 0.085 3.915 24 C -0.127 4.127 25 C -0.063 4.063 26 C -0.151 4.151 27 C -0.036 4.036 28 C -0.183 4.183 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.054 0.946 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.000 1.000 43 H 0.253 0.747 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.134 0.866 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 -17.399 -19.998 26.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.228 4.228 4 N -0.331 5.331 5 C -0.031 4.031 6 C 0.009 3.991 7 N -0.322 5.322 8 C 0.017 3.983 9 C -0.387 4.387 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.550 5.550 13 Si 0.734 3.266 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.300 3.700 18 O -0.401 6.401 19 C -0.117 4.117 20 C -0.027 4.027 21 N -0.015 5.015 22 O -0.101 6.101 23 C 0.031 3.969 24 C -0.146 4.146 25 C -0.082 4.082 26 C -0.169 4.169 27 C -0.056 4.056 28 C -0.187 4.187 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.156 0.844 47 H 0.157 0.843 48 H 0.152 0.848 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.942 -16.949 -19.238 25.713 hybrid contribution -1.355 0.453 0.312 1.462 sum -3.297 -16.497 -18.926 25.322 Atomic orbital electron populations 1.22181 0.94658 1.02319 1.03131 1.21225 0.94833 0.94234 0.87371 1.22335 1.01858 0.95282 1.03332 1.48160 1.49922 1.26917 1.08095 1.22528 1.00732 0.99032 0.80784 1.21181 0.94544 0.94914 0.88441 1.43835 1.59294 1.29664 0.99397 1.20801 0.98906 0.90284 0.88297 1.19091 1.15593 1.02101 1.01897 0.91585 1.25041 0.97715 0.98198 0.98667 1.70078 1.31116 1.42368 1.11421 0.86353 0.81546 0.81416 0.77287 1.21111 1.21643 1.20966 1.19952 0.79263 0.80881 0.89889 1.90787 1.52534 1.57579 1.39221 1.20341 0.99609 0.93359 0.98422 1.23763 0.92098 0.94061 0.92756 1.79893 1.11689 0.91704 1.18176 1.89164 1.27473 1.12808 1.80688 1.20297 0.87024 0.93237 0.96366 1.20059 0.99087 0.89335 1.06156 1.21134 0.91132 1.00431 0.95538 1.20792 0.99295 0.93192 1.03636 1.20444 0.95197 0.95008 0.94949 1.20624 0.95636 0.90600 1.11832 0.91282 0.91417 0.92438 0.89658 0.92058 0.91689 0.90391 0.90475 0.90657 0.94600 0.92823 0.95121 0.94162 0.98110 0.93685 0.86067 0.86054 0.84372 0.84322 0.84802 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.17 37.16 0.34 -1.13 16 2 C 0.13 1.26 3.17 -67.93 -0.22 1.04 16 3 C -0.17 -1.84 8.14 37.16 0.30 -1.54 16 4 N -0.60 -8.27 2.40 -166.10 -0.40 -8.67 16 5 C 0.09 1.66 5.15 -4.04 -0.02 1.64 16 6 C 0.14 2.93 5.69 -4.04 -0.02 2.90 16 7 N -0.60 -15.45 2.92 -181.12 -0.53 -15.98 16 8 C 0.16 4.25 8.98 59.84 0.54 4.79 16 9 C -0.26 -7.01 9.65 -15.06 -0.15 -7.16 16 10 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 11 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 12 N -0.91 -26.91 10.71 55.49 0.59 -26.31 16 13 Si 0.90 21.75 29.57 -169.99 -5.03 16.72 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.52 7.62 7.67 -10.99 -0.08 7.53 16 18 O -0.53 -10.38 15.61 5.55 0.09 -10.30 16 19 C -0.08 -0.80 4.61 -29.03 -0.13 -0.93 16 20 C 0.16 2.07 5.96 -80.12 -0.48 1.60 16 21 N -0.27 -4.28 12.81 34.91 0.45 -3.84 16 22 O -0.09 -1.39 12.06 7.67 0.09 -1.30 16 23 C 0.08 1.09 7.48 -38.48 -0.29 0.81 16 24 C -0.13 -1.19 10.07 -39.47 -0.40 -1.59 16 25 C -0.06 -0.46 10.02 -39.54 -0.40 -0.86 16 26 C -0.15 -1.15 9.97 -39.96 -0.40 -1.55 16 27 C -0.04 -0.34 10.05 -39.62 -0.40 -0.74 16 28 C -0.18 -2.27 6.33 -105.16 -0.67 -2.94 16 29 H 0.07 0.75 6.66 -51.93 -0.35 0.41 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.59 5.77 -51.93 -0.30 0.29 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 36 H 0.08 1.34 6.43 -51.93 -0.33 1.01 16 37 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 38 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.05 1.09 5.34 -51.93 -0.28 0.82 16 40 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 41 H 0.04 1.11 7.34 -51.93 -0.38 0.72 16 42 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 1.03 7.79 -51.93 -0.40 0.62 16 45 H 0.12 0.79 7.79 -51.92 -0.40 0.39 16 46 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 48 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -35.68 399.74 -8.56 -44.25 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.30 Total: -2.45 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -2.55 Total: 1.86 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.11 Total: -54.80 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.18 Total: -11.60 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.68 -8.56 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486371837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.587 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds