Wall clock time and date at job start Wed Apr 1 2020 03:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47246 * 2 1 4 4 N 1.46495 * 109.46917 * 120.00122 * 2 1 3 5 5 C 1.46505 * 120.00083 * 299.99569 * 4 2 1 6 6 C 1.53001 * 109.47211 * 270.00492 * 5 4 2 7 7 N 1.46505 * 109.47211 * 179.97438 * 6 5 4 8 8 C 1.46495 * 120.00083 * 89.99508 * 7 6 5 9 9 C 1.36938 * 119.99634 * 269.99816 * 7 6 5 10 10 H 1.08001 * 119.99753 * 23.04711 * 9 7 6 11 11 C 1.38805 * 119.99858 * 203.04195 * 9 7 6 12 12 N 1.31628 * 119.99974 * 12.92880 * 11 9 7 13 13 Si 1.86799 * 120.00095 * 192.92478 * 11 9 7 14 14 H 1.48496 * 109.47177 * 60.00375 * 13 11 9 15 15 H 1.48505 * 109.47113 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47271 * 300.00236 * 13 11 9 17 17 C 1.34772 * 120.00416 * 119.99969 * 4 2 1 18 18 O 1.21284 * 120.00522 * 179.97438 * 17 4 2 19 19 C 1.50702 * 119.99887 * 359.97438 * 17 4 2 20 20 C 1.50702 * 109.47575 * 180.02562 * 19 17 4 21 21 N 1.29741 * 126.29230 * 270.00080 * 20 19 17 22 22 O 1.41352 * 109.74172 * 179.97438 * 21 20 19 23 23 C 1.34826 * 109.32876 * 0.02562 * 22 21 20 24 24 C 1.38979 * 133.44466 * 180.02562 * 23 22 21 25 25 C 1.37801 * 119.78889 * 179.97438 * 24 23 22 26 26 C 1.38776 * 120.60598 * 0.02562 * 25 24 23 27 27 C 1.36628 * 120.51395 * 359.97438 * 26 25 24 28 28 C 1.39689 * 119.78837 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.46983 * 300.00215 * 1 2 3 30 30 H 1.09001 * 109.46815 * 60.00183 * 1 2 3 31 31 H 1.08993 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46983 * 239.99785 * 2 1 3 33 33 H 1.08992 * 109.46871 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47009 * 300.00116 * 3 2 1 35 35 H 1.08994 * 109.46860 * 59.99880 * 3 2 1 36 36 H 1.09003 * 109.47031 * 30.00388 * 5 4 2 37 37 H 1.08997 * 109.47221 * 150.00577 * 5 4 2 38 38 H 1.09003 * 109.47038 * 299.99892 * 6 5 4 39 39 H 1.08994 * 109.47233 * 59.99490 * 6 5 4 40 40 H 1.08997 * 109.46964 * 95.12453 * 8 7 6 41 41 H 1.09000 * 109.47140 * 215.12517 * 8 7 6 42 42 H 1.09000 * 109.47243 * 335.13161 * 8 7 6 43 43 H 0.97001 * 120.00072 * 179.97438 * 12 11 9 44 44 H 1.08996 * 109.47462 * 59.99563 * 19 17 4 45 45 H 1.09009 * 109.46886 * 300.00197 * 19 17 4 46 46 H 1.07997 * 120.10491 * 359.97323 * 24 23 22 47 47 H 1.08002 * 119.69409 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.74637 * 179.71955 * 26 25 24 49 49 H 1.07997 * 120.10987 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 2.7191 0.8170 2.9899 7 7 2.3649 1.3180 4.3203 8 6 2.8527 0.6277 5.5168 9 6 1.5777 2.4316 4.4453 10 1 0.9230 2.7235 3.6375 11 6 1.6213 3.1850 5.6103 12 7 2.5859 2.9901 6.4844 13 14 0.3111 4.4757 5.9374 14 1 -1.0237 3.8263 5.9800 15 1 0.5820 5.1371 7.2391 16 1 0.3337 5.4900 4.8531 17 6 2.7931 -1.7864 1.0726 18 8 3.1978 -2.3579 2.0628 19 6 3.1568 -2.3017 -0.2961 20 6 4.0228 -3.5273 -0.1579 21 7 5.3181 -3.5484 -0.0877 22 8 5.7678 -4.8826 0.0373 23 6 4.7055 -5.7129 0.0434 24 6 4.5715 -7.0927 0.1411 25 6 3.3169 -7.6621 0.1175 26 6 2.1837 -6.8702 -0.0035 27 6 2.2939 -5.5118 -0.1008 28 6 3.5565 -4.9146 -0.0790 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 0.6904 0.2974 2.4844 37 1 1.6239 -1.0226 3.2292 38 1 3.6931 0.3295 3.0323 39 1 2.7598 1.6494 2.2875 40 1 3.7662 1.1085 5.8665 41 1 2.0946 0.6758 6.2985 42 1 3.0603 -0.4148 5.2756 43 1 2.6166 3.5169 7.2984 44 1 3.7015 -1.5311 -0.8416 45 1 2.2482 -2.5587 -0.8408 46 1 5.4479 -7.7168 0.2351 47 1 3.2146 -8.7346 0.1931 48 1 1.2074 -7.3314 -0.0250 49 1 1.4077 -4.9018 -0.1952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486371837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:23 Heat of formation + Delta-G solvation = 36.269224 kcal Electronic energy + Delta-G solvation = -30533.832413 eV Core-core repulsion = 26463.869863 eV Total energy + Delta-G solvation = -4069.962550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.86666 -41.21026 -38.70052 -38.22344 -37.18143 -35.69668 -33.75364 -32.53618 -31.78239 -31.28080 -31.02184 -29.28585 -28.02514 -27.92373 -25.37862 -24.27135 -23.71067 -23.12492 -22.48711 -21.66552 -19.71450 -18.89049 -18.59359 -18.45975 -18.13709 -17.21120 -16.99566 -16.61827 -16.56278 -16.35098 -15.57057 -15.41282 -15.16837 -14.91650 -14.89128 -14.73495 -14.58357 -14.36847 -14.10467 -13.82148 -13.49842 -13.27940 -13.25524 -13.15220 -13.10824 -12.82258 -12.77959 -12.69004 -12.49851 -12.39606 -12.24613 -12.16449 -12.09559 -12.07792 -11.95375 -11.77931 -11.42898 -10.93761 -10.67940 -9.97602 -9.84756 -9.62769 -8.78179 -7.82864 -5.34922 -0.40916 0.27206 0.89302 1.39942 1.46464 1.49831 1.51175 1.56852 1.97338 2.51756 2.62779 2.89459 3.16680 3.30734 3.41286 3.55709 3.70603 3.91956 3.98446 4.07447 4.15516 4.18440 4.20177 4.24857 4.32444 4.37394 4.45155 4.53969 4.63213 4.70702 4.74599 4.81360 4.85877 4.90648 4.92361 5.04726 5.07867 5.10420 5.11995 5.23917 5.28489 5.39415 5.45778 5.48780 5.55579 5.59361 5.63606 5.70280 6.14694 6.29753 6.40809 7.08020 7.11645 7.81070 8.29841 9.21146 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002521 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.202734 B =11103.950021 C =11705.331662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.122 3.878 3 C -0.170 4.170 4 N -0.592 5.592 5 C 0.116 3.884 6 C 0.143 3.857 7 N -0.616 5.616 8 C 0.180 3.820 9 C -0.261 4.261 10 H 0.081 0.919 11 C -0.058 4.058 12 N -0.944 5.944 13 Si 0.975 3.025 14 H -0.275 1.275 15 H -0.299 1.299 16 H -0.270 1.270 17 C 0.513 3.487 18 O -0.584 6.584 19 C -0.068 4.068 20 C 0.154 3.846 21 N -0.319 5.319 22 O -0.121 6.121 23 C 0.048 3.952 24 C -0.140 4.140 25 C -0.050 4.050 26 C -0.145 4.145 27 C -0.044 4.044 28 C -0.207 4.207 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.045 0.955 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.013 0.987 39 H 0.064 0.936 40 H 0.002 0.998 41 H 0.021 0.979 42 H 0.013 0.987 43 H 0.248 0.752 44 H 0.146 0.854 45 H 0.172 0.828 46 H 0.153 0.847 47 H 0.178 0.822 48 H 0.170 0.830 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.647 -18.463 -23.173 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.228 4.228 4 N -0.325 5.325 5 C -0.010 4.010 6 C 0.016 3.984 7 N -0.340 5.340 8 C 0.035 3.965 9 C -0.391 4.391 10 H 0.099 0.901 11 C -0.253 4.253 12 N -0.591 5.591 13 Si 0.803 3.197 14 H -0.201 1.201 15 H -0.225 1.225 16 H -0.195 1.195 17 C 0.300 3.700 18 O -0.464 6.464 19 C -0.107 4.107 20 C -0.027 4.027 21 N -0.063 5.063 22 O -0.131 6.131 23 C -0.005 4.005 24 C -0.159 4.159 25 C -0.069 4.069 26 C -0.163 4.163 27 C -0.064 4.064 28 C -0.211 4.211 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.031 0.969 43 H 0.057 0.943 44 H 0.163 0.837 45 H 0.189 0.811 46 H 0.171 0.829 47 H 0.196 0.804 48 H 0.188 0.812 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.185 -18.027 -22.499 29.292 hybrid contribution -0.371 0.659 1.234 1.447 sum -5.557 -17.367 -21.265 28.012 Atomic orbital electron populations 1.22169 0.93366 1.03117 1.03256 1.21638 0.95847 0.93686 0.86804 1.22325 1.01248 0.95940 1.03262 1.48182 1.49635 1.26874 1.07777 1.21848 0.99502 0.96879 0.82726 1.21271 0.94583 0.95791 0.86772 1.44074 1.59457 1.29810 1.00639 1.20470 0.96955 0.90676 0.88402 1.19521 1.15451 1.01943 1.02184 0.90141 1.25940 0.99900 1.00770 0.98684 1.70272 1.33185 1.43799 1.11815 0.85224 0.78875 0.78817 0.76819 1.20091 1.22499 1.19542 1.20679 0.78005 0.80293 0.90979 1.90770 1.54613 1.59413 1.41629 1.20518 1.01509 0.92868 0.95855 1.24271 0.91776 0.95599 0.91023 1.79791 1.13430 0.92394 1.20711 1.89067 1.29024 1.13240 1.81794 1.20905 0.86831 0.94546 0.98204 1.20492 1.00973 0.88184 1.06282 1.21674 0.89996 1.02412 0.92854 1.21315 1.00988 0.92568 1.01419 1.20851 0.94698 0.96261 0.94567 1.20888 0.96783 0.90122 1.13287 0.93789 0.88627 0.91335 0.85352 0.93050 0.88543 0.93604 0.89694 0.93450 0.96816 0.91800 0.97926 0.96054 0.96893 0.94312 0.83672 0.81061 0.82918 0.80441 0.81229 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.17 71.98 0.66 -1.60 16 2 C 0.12 2.00 3.17 44.99 0.14 2.14 16 3 C -0.17 -3.25 8.14 71.98 0.59 -2.67 16 4 N -0.59 -15.60 2.40 -797.82 -1.91 -17.51 16 5 C 0.12 4.15 5.15 86.38 0.44 4.60 16 6 C 0.14 6.24 5.69 86.38 0.49 6.73 16 7 N -0.62 -32.72 2.92 -726.95 -2.12 -34.85 16 8 C 0.18 9.96 8.98 127.77 1.15 11.11 16 9 C -0.26 -14.37 9.65 84.03 0.81 -13.56 16 10 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 11 C -0.06 -3.31 5.10 84.86 0.43 -2.88 16 12 N -0.94 -57.93 10.71 21.65 0.23 -57.70 16 13 Si 0.98 44.95 29.57 68.60 2.03 46.98 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C 0.51 14.73 7.67 87.66 0.67 15.40 16 18 O -0.58 -23.82 15.61 -3.04 -0.05 -23.87 16 19 C -0.07 -1.24 4.61 29.10 0.13 -1.11 16 20 C 0.15 4.10 5.96 45.04 0.27 4.37 16 21 N -0.32 -10.54 12.81 -43.47 -0.56 -11.10 16 22 O -0.12 -4.01 12.06 29.82 0.36 -3.65 16 23 C 0.05 1.28 7.48 22.99 0.17 1.45 16 24 C -0.14 -2.52 10.07 22.34 0.23 -2.29 16 25 C -0.05 -0.58 10.02 22.29 0.22 -0.36 16 26 C -0.15 -1.66 9.97 22.02 0.22 -1.44 16 27 C -0.04 -0.71 10.05 22.24 0.22 -0.49 16 28 C -0.21 -5.02 6.33 -20.22 -0.13 -5.14 16 29 H 0.04 0.85 6.66 -2.39 -0.02 0.84 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.13 1.07 5.77 -2.39 -0.01 1.06 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.04 1.18 6.17 -2.39 -0.01 1.17 16 36 H 0.08 2.93 6.43 -2.39 -0.02 2.91 16 37 H 0.05 1.97 7.42 -2.39 -0.02 1.96 16 38 H 0.01 0.64 8.07 -2.39 -0.02 0.62 16 39 H 0.06 2.64 5.34 -2.39 -0.01 2.63 16 40 H 0.00 0.15 7.34 -2.39 -0.02 0.13 16 41 H 0.02 1.21 7.34 -2.39 -0.02 1.19 16 42 H 0.01 0.65 8.03 -2.39 -0.02 0.63 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.15 2.00 7.79 -2.39 -0.02 1.98 16 45 H 0.17 1.36 7.79 -2.38 -0.02 1.35 16 46 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 48 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 49 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -85.47 399.74 5.66 -79.81 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.95 Total: 7.63 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 6.73 Total: 14.24 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -4.36 Total: -121.15 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: 0.31 Total: -27.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -85.47 5.66 -79.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486371837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.084 kcal (2) G-P(sol) polarization free energy of solvation -85.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds