Wall clock time and date at job start Wed Apr 1 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 N 1.46500 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00243 * 97.04762 * 4 3 2 6 6 O 1.21553 * 120.00161 * 44.66701 * 5 4 3 7 7 C 1.47865 * 120.00045 * 224.67347 * 5 4 3 8 8 C 1.39708 * 120.07051 * 324.87958 * 7 5 4 9 9 C 1.38056 * 120.14497 * 179.97438 * 8 7 5 10 10 C 1.38094 * 120.29411 * 359.96136 * 9 8 7 11 11 C 1.39662 * 120.14769 * 0.03859 * 10 9 8 12 12 C 1.47866 * 120.07711 * 180.25540 * 11 10 9 13 13 N 1.34779 * 119.99386 * 359.72416 * 12 11 10 14 14 O 1.21542 * 120.00197 * 179.72545 * 12 11 10 15 15 C 1.39287 * 120.07507 * 144.86126 * 7 5 4 16 16 C 1.46501 * 119.99560 * 277.04006 * 4 3 2 17 17 H 1.08996 * 110.64682 * 335.36212 * 16 4 3 18 18 C 1.55152 * 110.71910 * 98.51049 * 16 4 3 19 19 C 1.55116 * 101.49040 * 153.72898 * 18 16 4 20 20 N 1.47426 * 104.94320 * 323.22625 * 19 18 16 21 21 C 1.36944 * 125.64725 * 203.96719 * 20 19 18 22 22 H 1.07993 * 119.99802 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99813 * 0.03698 * 21 20 19 24 24 N 1.31618 * 120.00012 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99554 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47414 * 59.99649 * 25 23 21 27 27 H 1.48500 * 109.46857 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46934 * 299.99450 * 25 23 21 29 29 C 1.47019 * 108.70452 * 23.99626 * 20 19 18 30 30 H 1.08999 * 109.46961 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47792 * 300.00793 * 1 2 3 32 32 H 1.09009 * 109.46726 * 60.00533 * 1 2 3 33 33 H 1.08998 * 109.47675 * 239.99969 * 2 1 3 34 34 H 1.09005 * 109.47001 * 119.99049 * 2 1 3 35 35 H 1.08995 * 109.47495 * 59.99025 * 3 2 1 36 36 H 1.09009 * 109.46946 * 299.99332 * 3 2 1 37 37 H 1.08006 * 119.92448 * 359.97438 * 8 7 5 38 38 H 1.07996 * 119.84958 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.92528 * 180.02562 * 10 9 8 40 40 H 0.96993 * 120.00288 * 0.02562 * 13 12 11 41 41 H 0.96999 * 119.99701 * 179.97438 * 13 12 11 42 42 H 1.08007 * 120.15010 * 359.97438 * 15 7 5 43 43 H 1.09001 * 111.00651 * 271.94298 * 18 16 4 44 44 H 1.09003 * 111.00530 * 35.78361 * 18 16 4 45 45 H 1.08996 * 110.42332 * 204.29136 * 19 18 16 46 46 H 1.09001 * 110.29802 * 82.08530 * 19 18 16 47 47 H 0.96995 * 119.99434 * 180.02562 * 24 23 21 48 48 H 1.09002 * 109.88535 * 239.52842 * 29 20 19 49 49 H 1.09000 * 109.88305 * 118.35921 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.5855 -1.1574 6 8 3.8353 2.4304 -1.9608 7 6 5.3378 0.7147 -1.4508 8 6 6.1855 0.3058 -0.4183 9 6 7.2672 -0.5077 -0.6904 10 6 7.5185 -0.9234 -1.9831 11 6 6.6790 -0.5220 -3.0246 12 6 6.9463 -0.9727 -4.4073 13 7 8.0042 -1.7671 -4.6645 14 8 6.2120 -0.6266 -5.3119 15 6 5.5861 0.2998 -2.7571 16 6 4.2369 1.2872 1.2602 17 1 3.6257 1.6117 2.1023 18 6 4.6972 -0.1823 1.4499 19 6 5.9403 -0.0016 2.3599 20 7 6.5813 1.2386 1.8860 21 6 7.9022 1.5644 2.0424 22 1 8.2764 2.5016 1.6578 23 6 8.7602 0.6898 2.6949 24 7 8.3041 -0.4524 3.1638 25 14 10.5618 1.1345 2.9088 26 1 10.6717 2.3936 3.6885 27 1 11.2590 0.0411 3.6324 28 1 11.1871 1.3221 1.5750 29 6 5.5675 2.0679 1.2183 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9565 0.8898 36 1 1.6767 1.9564 -0.8901 37 1 5.9941 0.6270 0.5950 38 1 7.9196 -0.8205 0.1114 39 1 8.3661 -1.5601 -2.1891 40 1 8.5900 -2.0436 -3.9425 41 1 8.1793 -2.0631 -5.5714 42 1 4.9334 0.6124 -3.5588 43 1 3.9273 -0.7717 1.9479 44 1 4.9746 -0.6311 0.4961 45 1 6.6197 -0.8466 2.2479 46 1 5.6349 0.1033 3.4010 47 1 8.9036 -1.0633 3.6201 48 1 5.8590 2.2485 0.1837 49 1 5.4579 3.0156 1.7456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493955671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:46 Heat of formation + Delta-G solvation = 78.924617 kcal Electronic energy + Delta-G solvation = -32394.544980 eV Core-core repulsion = 28326.432107 eV Total energy + Delta-G solvation = -4068.112873 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55237 -39.52389 -38.36995 -37.24461 -35.63676 -33.77063 -33.40820 -32.00283 -30.68547 -30.39917 -29.51510 -27.77723 -26.03208 -24.88548 -23.91605 -23.26533 -21.36022 -21.05203 -20.83088 -20.38128 -18.67794 -17.82303 -17.58808 -17.12475 -16.46331 -16.23602 -15.52616 -15.31804 -14.96440 -14.63951 -14.50142 -14.22313 -14.11818 -13.81236 -13.65841 -13.36942 -13.35410 -12.98609 -12.75724 -12.53096 -12.12772 -12.09425 -11.85114 -11.62800 -11.48804 -11.31432 -11.22433 -11.00807 -10.95377 -10.75882 -10.56667 -10.34964 -10.28001 -10.06825 -9.92176 -9.69482 -9.64016 -9.48242 -8.92603 -8.61915 -8.27033 -8.12243 -7.15063 -5.96691 -3.43549 1.14212 1.50562 2.72817 3.12189 3.24194 3.26052 3.30938 3.32827 3.61532 4.22175 4.28636 4.71296 4.94691 4.97629 4.99158 5.04527 5.13017 5.19433 5.24858 5.27608 5.34287 5.39362 5.46031 5.51530 5.67851 5.75534 5.79753 5.91410 5.95817 5.96590 6.08339 6.10263 6.18492 6.26155 6.36594 6.38194 6.44452 6.46055 6.58876 6.78755 6.94504 7.01548 7.07021 7.21069 7.32033 7.35856 7.44837 7.54538 7.61680 7.96613 8.25587 8.32812 8.86729 9.44441 10.00283 11.05160 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007565 B = 0.005617 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.305536 B = 4983.415750 C = 7746.884811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.126 3.874 4 N -0.642 5.642 5 C 0.596 3.404 6 O -0.517 6.517 7 C -0.185 4.185 8 C -0.104 4.104 9 C -0.125 4.125 10 C -0.068 4.068 11 C -0.181 4.181 12 C 0.570 3.430 13 N -0.855 5.855 14 O -0.550 6.550 15 C -0.011 4.011 16 C 0.135 3.865 17 H 0.099 0.901 18 C -0.189 4.189 19 C 0.135 3.865 20 N -0.577 5.577 21 C -0.241 4.241 22 H 0.083 0.917 23 C 0.006 3.994 24 N -0.915 5.915 25 Si 0.915 3.085 26 H -0.283 1.283 27 H -0.288 1.288 28 H -0.281 1.281 29 C 0.096 3.904 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.401 0.599 41 H 0.401 0.599 42 H 0.131 0.869 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.121 0.879 46 H 0.026 0.974 47 H 0.258 0.742 48 H 0.048 0.952 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -4.390 -4.133 9.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.004 3.996 4 N -0.377 5.377 5 C 0.387 3.613 6 O -0.392 6.392 7 C -0.188 4.188 8 C -0.121 4.121 9 C -0.143 4.143 10 C -0.087 4.087 11 C -0.184 4.184 12 C 0.358 3.642 13 N -0.419 5.419 14 O -0.428 6.428 15 C -0.031 4.031 16 C 0.031 3.969 17 H 0.117 0.883 18 C -0.228 4.228 19 C 0.012 3.988 20 N -0.303 5.303 21 C -0.369 4.369 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.561 5.561 25 Si 0.744 3.256 26 H -0.209 1.209 27 H -0.213 1.213 28 H -0.207 1.207 29 C -0.029 4.029 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.261 0.739 38 H 0.161 0.839 39 H 0.136 0.864 40 H 0.231 0.769 41 H 0.231 0.769 42 H 0.149 0.851 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.139 0.861 46 H 0.044 0.956 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.341 -3.662 -4.902 9.556 hybrid contribution 1.461 -0.157 0.087 1.472 sum -5.880 -3.818 -4.815 8.505 Atomic orbital electron populations 1.21693 0.95397 1.01754 1.01778 1.22021 0.95754 0.97621 1.02918 1.21423 0.78795 0.96360 1.03055 1.47340 1.05796 1.78604 1.06001 1.18254 0.81695 0.80877 0.80466 1.90705 1.67712 1.31054 1.49703 1.20291 0.99591 1.04390 0.94557 1.26633 0.89598 0.88433 1.07430 1.21341 0.98594 0.98478 0.95926 1.21532 0.96888 0.96983 0.93321 1.19499 1.00284 1.06067 0.92565 1.18344 0.79987 0.77252 0.88656 1.43747 1.30742 1.53774 1.13625 1.90778 1.48003 1.57058 1.46970 1.21128 0.94417 0.92122 0.95423 1.22221 0.93006 0.96446 0.85200 0.88350 1.24328 1.00153 0.95773 1.02583 1.22341 0.90950 0.91948 0.93605 1.44923 1.05152 1.17055 1.63168 1.19031 0.81790 1.03345 1.32694 0.89958 1.24787 0.98597 0.96477 0.99220 1.69740 1.34235 1.09933 1.42178 0.86156 0.83820 0.77546 0.78065 1.20895 1.21340 1.20748 1.22096 0.88153 0.94485 0.98179 0.92593 0.92618 0.92735 0.91906 0.91212 0.90967 0.90243 0.73875 0.83929 0.86412 0.76921 0.76891 0.85146 0.91362 0.88829 0.86129 0.95553 0.93090 0.93466 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.14 -1.61 6.24 -26.73 -0.17 -1.77 16 3 C 0.13 1.59 5.65 -4.04 -0.02 1.57 16 4 N -0.64 -10.02 2.53 -165.12 -0.42 -10.44 16 5 C 0.60 11.03 5.47 -12.32 -0.07 10.96 16 6 O -0.52 -10.80 16.95 5.32 0.09 -10.71 16 7 C -0.18 -3.43 5.19 -105.02 -0.54 -3.97 16 8 C -0.10 -1.93 3.73 -39.10 -0.15 -2.07 16 9 C -0.13 -2.25 10.02 -39.70 -0.40 -2.64 16 10 C -0.07 -1.05 9.54 -39.10 -0.37 -1.42 16 11 C -0.18 -3.00 5.87 -105.02 -0.62 -3.61 16 12 C 0.57 8.94 8.05 -12.32 -0.10 8.85 16 13 N -0.86 -9.12 8.82 30.53 0.27 -8.85 16 14 O -0.55 -10.56 17.18 5.33 0.09 -10.46 16 15 C -0.01 -0.20 9.15 -38.78 -0.35 -0.56 16 16 C 0.14 2.14 3.37 -66.09 -0.22 1.91 16 17 H 0.10 1.37 7.97 -51.93 -0.41 0.96 16 18 C -0.19 -3.05 5.92 -24.47 -0.14 -3.19 16 19 C 0.14 2.69 5.25 -2.42 -0.01 2.68 16 20 N -0.58 -12.31 1.99 -204.62 -0.41 -12.71 16 21 C -0.24 -5.75 10.22 -15.06 -0.15 -5.91 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C 0.01 0.15 5.49 -17.43 -0.10 0.05 16 24 N -0.91 -22.39 10.09 55.49 0.56 -21.83 16 25 Si 0.91 19.62 29.55 -169.99 -5.02 14.59 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 29 C 0.10 1.81 5.75 -3.06 -0.02 1.80 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 35 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 36 H 0.08 1.06 7.51 -51.92 -0.39 0.67 16 37 H 0.25 4.66 0.00 0.00 0.00 4.66 16 38 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 39 H 0.12 1.37 6.39 -52.49 -0.34 1.03 16 40 H 0.40 3.31 6.85 -40.82 -0.28 3.03 16 41 H 0.40 3.51 8.93 -40.82 -0.36 3.15 16 42 H 0.13 2.48 7.59 -52.48 -0.40 2.09 16 43 H 0.07 0.95 7.80 -51.93 -0.40 0.55 16 44 H 0.09 1.60 4.47 -53.72 -0.24 1.36 16 45 H 0.12 2.67 5.87 -51.93 -0.31 2.36 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.26 6.25 8.31 -40.82 -0.34 5.91 16 48 H 0.05 0.98 4.54 -51.93 -0.24 0.74 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -29.24 379.92 -8.87 -38.11 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -6.69 Total: 14.88 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.07 Total: 1.70 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.00 Total: -53.84 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.18 Total: -21.17 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.24 -8.87 -38.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493955671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.034 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds