Wall clock time and date at job start Wed Apr 1 2020 03:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 N 1.46500 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00243 * 97.04762 * 4 3 2 6 6 O 1.21553 * 120.00161 * 44.66701 * 5 4 3 7 7 C 1.47865 * 120.00045 * 224.67347 * 5 4 3 8 8 C 1.39708 * 120.07051 * 324.87958 * 7 5 4 9 9 C 1.38056 * 120.14497 * 179.97438 * 8 7 5 10 10 C 1.38094 * 120.29411 * 359.96136 * 9 8 7 11 11 C 1.39662 * 120.14769 * 0.03859 * 10 9 8 12 12 C 1.47866 * 120.07711 * 180.25540 * 11 10 9 13 13 N 1.34779 * 119.99386 * 359.72416 * 12 11 10 14 14 O 1.21542 * 120.00197 * 179.72545 * 12 11 10 15 15 C 1.39287 * 120.07507 * 144.86126 * 7 5 4 16 16 C 1.46501 * 119.99560 * 277.04006 * 4 3 2 17 17 H 1.08996 * 110.64682 * 335.36212 * 16 4 3 18 18 C 1.55152 * 110.71910 * 98.51049 * 16 4 3 19 19 C 1.55116 * 101.49040 * 153.72898 * 18 16 4 20 20 N 1.47426 * 104.94320 * 323.22625 * 19 18 16 21 21 C 1.36944 * 125.64725 * 203.96719 * 20 19 18 22 22 H 1.07993 * 119.99802 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99813 * 0.03698 * 21 20 19 24 24 N 1.31618 * 120.00012 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99554 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47414 * 59.99649 * 25 23 21 27 27 H 1.48500 * 109.46857 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.46934 * 299.99450 * 25 23 21 29 29 C 1.47019 * 108.70452 * 23.99626 * 20 19 18 30 30 H 1.08999 * 109.46961 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47792 * 300.00793 * 1 2 3 32 32 H 1.09009 * 109.46726 * 60.00533 * 1 2 3 33 33 H 1.08998 * 109.47675 * 239.99969 * 2 1 3 34 34 H 1.09005 * 109.47001 * 119.99049 * 2 1 3 35 35 H 1.08995 * 109.47495 * 59.99025 * 3 2 1 36 36 H 1.09009 * 109.46946 * 299.99332 * 3 2 1 37 37 H 1.08006 * 119.92448 * 359.97438 * 8 7 5 38 38 H 1.07996 * 119.84958 * 179.97438 * 9 8 7 39 39 H 1.08000 * 119.92528 * 180.02562 * 10 9 8 40 40 H 0.96993 * 120.00288 * 0.02562 * 13 12 11 41 41 H 0.96999 * 119.99701 * 179.97438 * 13 12 11 42 42 H 1.08007 * 120.15010 * 359.97438 * 15 7 5 43 43 H 1.09001 * 111.00651 * 271.94298 * 18 16 4 44 44 H 1.09003 * 111.00530 * 35.78361 * 18 16 4 45 45 H 1.08996 * 110.42332 * 204.29136 * 19 18 16 46 46 H 1.09001 * 110.29802 * 82.08530 * 19 18 16 47 47 H 0.96995 * 119.99434 * 180.02562 * 24 23 21 48 48 H 1.09002 * 109.88535 * 239.52842 * 29 20 19 49 49 H 1.09000 * 109.88305 * 118.35921 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1794 1.5855 -1.1574 6 8 3.8353 2.4304 -1.9608 7 6 5.3378 0.7147 -1.4508 8 6 6.1855 0.3058 -0.4183 9 6 7.2672 -0.5077 -0.6904 10 6 7.5185 -0.9234 -1.9831 11 6 6.6790 -0.5220 -3.0246 12 6 6.9463 -0.9727 -4.4073 13 7 8.0042 -1.7671 -4.6645 14 8 6.2120 -0.6266 -5.3119 15 6 5.5861 0.2998 -2.7571 16 6 4.2369 1.2872 1.2602 17 1 3.6257 1.6117 2.1023 18 6 4.6972 -0.1823 1.4499 19 6 5.9403 -0.0016 2.3599 20 7 6.5813 1.2386 1.8860 21 6 7.9022 1.5644 2.0424 22 1 8.2764 2.5016 1.6578 23 6 8.7602 0.6898 2.6949 24 7 8.3041 -0.4524 3.1638 25 14 10.5618 1.1345 2.9088 26 1 10.6717 2.3936 3.6885 27 1 11.2590 0.0411 3.6324 28 1 11.1871 1.3221 1.5750 29 6 5.5675 2.0679 1.2183 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9565 0.8898 36 1 1.6767 1.9564 -0.8901 37 1 5.9941 0.6270 0.5950 38 1 7.9196 -0.8205 0.1114 39 1 8.3661 -1.5601 -2.1891 40 1 8.5900 -2.0436 -3.9425 41 1 8.1793 -2.0631 -5.5714 42 1 4.9334 0.6124 -3.5588 43 1 3.9273 -0.7717 1.9479 44 1 4.9746 -0.6311 0.4961 45 1 6.6197 -0.8466 2.2479 46 1 5.6349 0.1033 3.4010 47 1 8.9036 -1.0633 3.6201 48 1 5.8590 2.2485 0.1837 49 1 5.4579 3.0156 1.7456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493955671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:45 Heat of formation + Delta-G solvation = 61.165972 kcal Electronic energy + Delta-G solvation = -32395.315053 eV Core-core repulsion = 28326.432107 eV Total energy + Delta-G solvation = -4068.882946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.97459 -40.80617 -39.85698 -38.58976 -36.91510 -35.01065 -34.72516 -33.43103 -32.01288 -31.79537 -31.07592 -29.18331 -27.18217 -26.56341 -25.25212 -24.51779 -22.51189 -22.39201 -22.22735 -21.79545 -19.96776 -19.22288 -19.13267 -18.37870 -17.73972 -17.56734 -16.93799 -16.73019 -16.55264 -15.88459 -15.61641 -15.59860 -15.48933 -15.16042 -15.09158 -14.82986 -14.54080 -14.36075 -14.16609 -13.83468 -13.63301 -13.20544 -13.04732 -12.92287 -12.87677 -12.74574 -12.61971 -12.55267 -12.10797 -12.06418 -12.03401 -11.89476 -11.74378 -11.50743 -11.36439 -11.06799 -10.94594 -10.78241 -10.66928 -10.02443 -9.65186 -9.42697 -8.87036 -7.78565 -5.26152 -0.20789 0.08685 1.32714 1.53230 1.55487 1.60092 1.84615 1.94332 2.48182 2.52119 2.89845 3.30808 3.38611 3.52422 3.67489 3.83601 3.86175 3.95226 4.01578 4.09613 4.14400 4.16218 4.39529 4.42210 4.50927 4.53374 4.64331 4.69253 4.73183 4.81491 4.85136 4.96142 4.99828 5.03189 5.10285 5.20740 5.23183 5.28327 5.43593 5.49662 5.51857 5.59682 5.71077 5.76937 5.80905 5.84990 6.02743 6.22325 6.29205 6.35673 6.86267 7.06647 7.24102 7.65918 8.23595 9.20249 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007565 B = 0.005617 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3700.305536 B = 4983.415750 C = 7746.884811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.635 5.635 5 C 0.594 3.406 6 O -0.550 6.550 7 C -0.194 4.194 8 C -0.111 4.111 9 C -0.139 4.139 10 C -0.049 4.049 11 C -0.181 4.181 12 C 0.570 3.430 13 N -0.826 5.826 14 O -0.590 6.590 15 C -0.025 4.025 16 C 0.146 3.854 17 H 0.129 0.871 18 C -0.173 4.173 19 C 0.142 3.858 20 N -0.587 5.587 21 C -0.251 4.251 22 H 0.073 0.927 23 C -0.028 4.028 24 N -0.927 5.927 25 Si 0.963 3.037 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.094 3.906 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.247 0.753 38 H 0.128 0.872 39 H 0.161 0.839 40 H 0.417 0.583 41 H 0.415 0.585 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.014 0.986 47 H 0.254 0.746 48 H 0.030 0.970 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 -5.445 -3.868 9.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.369 5.369 5 C 0.386 3.614 6 O -0.428 6.428 7 C -0.198 4.198 8 C -0.129 4.129 9 C -0.157 4.157 10 C -0.068 4.068 11 C -0.184 4.184 12 C 0.357 3.643 13 N -0.390 5.390 14 O -0.472 6.472 15 C -0.045 4.045 16 C 0.043 3.957 17 H 0.147 0.853 18 C -0.212 4.212 19 C 0.018 3.982 20 N -0.314 5.314 21 C -0.379 4.379 22 H 0.091 0.909 23 C -0.223 4.223 24 N -0.574 5.574 25 Si 0.792 3.208 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.206 1.206 29 C -0.031 4.031 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.259 0.741 38 H 0.146 0.854 39 H 0.178 0.822 40 H 0.249 0.751 41 H 0.247 0.753 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.116 0.884 46 H 0.032 0.968 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.594 -4.754 -4.623 10.081 hybrid contribution 1.583 0.158 -0.022 1.591 sum -6.011 -4.596 -4.645 8.878 Atomic orbital electron populations 1.21666 0.93507 1.02531 1.02472 1.21958 0.97308 0.96148 1.02275 1.21701 0.76715 0.97752 1.03908 1.47376 1.06999 1.77551 1.04958 1.18372 0.81655 0.80493 0.80920 1.90683 1.68725 1.32420 1.50985 1.20327 1.00000 1.04809 0.94667 1.26501 0.90139 0.89036 1.07190 1.21281 0.98501 0.99220 0.96706 1.21803 0.97254 0.96043 0.91677 1.19654 0.99707 1.05428 0.93620 1.18232 0.80724 0.77719 0.87656 1.43484 1.28950 1.51543 1.15070 1.90767 1.49785 1.58907 1.47753 1.21157 0.95222 0.93120 0.95024 1.22201 0.91977 0.95592 0.85978 0.85339 1.24148 0.99135 0.96341 1.01528 1.22135 0.91822 0.90581 0.93633 1.44966 1.04955 1.18035 1.63408 1.19135 0.83284 1.03012 1.32452 0.90885 1.25273 1.01011 0.96577 0.99441 1.69905 1.34673 1.10286 1.42569 0.85405 0.80835 0.76831 0.77717 1.21288 1.21564 1.20564 1.22145 0.89317 0.94807 0.96782 0.91797 0.91135 0.92864 0.93784 0.90588 0.88249 0.91256 0.74081 0.85426 0.82175 0.75098 0.75264 0.86603 0.88345 0.89688 0.88402 0.96836 0.93585 0.95268 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.91 71.98 0.71 -1.52 16 2 C -0.14 -2.81 6.24 30.60 0.19 -2.62 16 3 C 0.12 2.83 5.65 86.38 0.49 3.32 16 4 N -0.63 -19.22 2.53 -794.59 -2.01 -21.23 16 5 C 0.59 22.28 5.47 86.79 0.47 22.75 16 6 O -0.55 -23.66 16.95 -3.88 -0.07 -23.72 16 7 C -0.19 -7.34 5.19 -20.12 -0.10 -7.44 16 8 C -0.11 -4.16 3.73 22.58 0.08 -4.08 16 9 C -0.14 -4.94 10.02 22.19 0.22 -4.71 16 10 C -0.05 -1.43 9.54 22.58 0.22 -1.21 16 11 C -0.18 -5.85 5.87 -20.12 -0.12 -5.97 16 12 C 0.57 17.13 8.05 86.79 0.70 17.83 16 13 N -0.83 -15.30 8.82 -175.59 -1.55 -16.85 16 14 O -0.59 -22.55 17.18 -3.85 -0.07 -22.62 16 15 C -0.03 -0.94 9.15 22.79 0.21 -0.73 16 16 C 0.15 4.40 3.37 46.18 0.16 4.55 16 17 H 0.13 3.17 7.97 -2.39 -0.02 3.15 16 18 C -0.17 -5.32 5.92 32.06 0.19 -5.13 16 19 C 0.14 5.61 5.25 86.93 0.46 6.06 16 20 N -0.59 -25.19 1.99 -801.29 -1.60 -26.79 16 21 C -0.25 -12.09 10.22 84.03 0.86 -11.23 16 22 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 23 C -0.03 -1.34 5.49 84.86 0.47 -0.87 16 24 N -0.93 -45.65 10.09 21.65 0.22 -45.43 16 25 Si 0.96 40.24 29.55 68.60 2.03 42.27 16 26 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 29 C 0.09 3.56 5.75 86.73 0.50 4.06 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.45 7.71 -2.38 -0.02 1.44 16 35 H 0.10 1.82 8.01 -2.39 -0.02 1.80 16 36 H 0.07 1.80 7.51 -2.38 -0.02 1.79 16 37 H 0.25 9.24 0.00 0.00 0.00 9.24 16 38 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 39 H 0.16 3.16 6.39 -2.91 -0.02 3.14 16 40 H 0.42 5.30 6.85 -92.71 -0.64 4.66 16 41 H 0.41 6.06 8.93 -92.71 -0.83 5.23 16 42 H 0.12 4.63 7.59 -2.91 -0.02 4.61 16 43 H 0.10 2.46 7.80 -2.39 -0.02 2.44 16 44 H 0.09 2.85 4.47 -4.07 -0.02 2.83 16 45 H 0.10 4.37 5.87 -2.39 -0.01 4.36 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 47 H 0.25 12.33 8.31 -92.71 -0.77 11.56 16 48 H 0.03 1.24 4.54 -2.39 -0.01 1.23 16 49 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -65.46 379.92 2.21 -63.26 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -0.45 Total: 38.04 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 5.70 Total: 13.07 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.93 Total: -110.30 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.13 Total: -46.34 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -65.46 2.21 -63.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493955671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.422 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds