Wall clock time and date at job start Wed Apr 1 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47647 * 2 1 4 4 H 1.08997 * 109.47170 * 54.63647 * 3 2 1 5 5 C 1.53009 * 109.46924 * 294.64168 * 3 2 1 6 6 N 1.46500 * 109.46923 * 184.99870 * 5 3 2 7 7 C 1.34776 * 119.99467 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00362 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99599 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.46716 * 299.99863 * 9 7 6 11 11 C 1.52997 * 109.47293 * 59.99783 * 9 7 6 12 12 C 1.47195 * 109.47338 * 180.02562 * 9 7 6 13 13 N 8.28421 * 92.87563 * 325.20435 * 2 1 3 14 14 N 1.46895 * 109.47460 * 174.64348 * 3 2 1 15 15 C 1.46904 * 110.99726 * 271.43192 * 14 3 2 16 16 C 1.50694 * 109.47217 * 184.77516 * 15 14 3 17 17 C 1.38309 * 119.93120 * 90.00077 * 16 15 14 18 18 C 1.38099 * 120.06955 * 180.02562 * 17 16 15 19 19 C 1.38872 * 119.93173 * 359.97438 * 18 17 16 20 20 O 1.35753 * 120.06884 * 180.02562 * 19 18 17 21 21 C 1.34820 * 116.99940 * 354.85963 * 20 19 18 22 22 H 1.08005 * 120.00429 * 5.11197 * 21 20 19 23 23 C 1.38661 * 120.00016 * 185.10067 * 21 20 19 24 24 N 1.31554 * 119.99999 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99857 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47087 * 90.00623 * 25 23 21 27 27 H 1.48499 * 109.46779 * 210.00016 * 25 23 21 28 28 H 1.48496 * 109.47353 * 330.00309 * 25 23 21 29 29 C 1.38883 * 119.86418 * 0.27232 * 19 18 17 30 30 C 1.38103 * 119.92604 * 359.49591 * 29 19 18 31 31 H 1.09003 * 109.46853 * 305.38980 * 1 2 3 32 32 H 1.08992 * 109.47337 * 65.38968 * 1 2 3 33 33 H 1.09000 * 109.46875 * 185.39677 * 1 2 3 34 34 H 1.09000 * 109.46741 * 239.99955 * 2 1 3 35 35 H 1.09003 * 109.47266 * 120.00557 * 2 1 3 36 36 H 1.09000 * 109.46580 * 304.99631 * 5 3 2 37 37 H 1.09000 * 109.47044 * 64.99750 * 5 3 2 38 38 H 0.96994 * 120.00164 * 359.97438 * 6 5 3 39 39 H 1.09000 * 109.47348 * 59.99612 * 11 9 7 40 40 H 1.08996 * 109.46951 * 180.02562 * 11 9 7 41 41 H 1.09000 * 109.47252 * 300.00154 * 11 9 7 42 42 H 1.00902 * 111.00068 * 147.48111 * 14 3 2 43 43 H 1.09001 * 109.47074 * 64.77875 * 15 14 3 44 44 H 1.08998 * 109.47172 * 304.77601 * 15 14 3 45 45 H 1.08003 * 119.96330 * 0.02562 * 17 16 15 46 46 H 1.07996 * 120.03156 * 179.97438 * 18 17 16 47 47 H 0.97004 * 119.99671 * 179.97438 * 24 23 21 48 48 H 1.07998 * 120.03387 * 179.72948 * 29 19 18 49 49 H 1.07996 * 119.96157 * 180.23545 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6005 1.9833 0.8380 5 6 1.6431 2.1238 -1.3112 6 7 2.2323 3.4640 -1.3630 7 6 2.0157 4.2544 -2.4330 8 8 1.3334 3.8560 -3.3530 9 6 2.6214 5.6334 -2.4860 10 1 2.2566 6.2230 -1.6448 11 6 4.1455 5.5243 -2.4095 12 6 2.2386 6.2893 -3.7469 13 7 1.9456 6.7944 -4.7214 14 7 3.5034 1.4444 0.1293 15 6 3.9070 1.4535 1.5418 16 6 5.4062 1.5736 1.6350 17 6 5.9959 2.8231 1.6977 18 6 7.3696 2.9364 1.7827 19 6 8.1591 1.7941 1.8057 20 8 9.5097 1.9023 1.8897 21 6 10.0284 3.1457 1.8401 22 1 9.3730 4.0040 1.8211 23 6 11.4034 3.3228 1.8138 24 7 12.2018 2.2775 1.8368 25 14 12.1220 5.0458 1.7458 26 1 12.3333 5.5488 3.1270 27 1 13.4211 5.0122 1.0272 28 1 11.1831 5.9459 1.0294 29 6 7.5643 0.5409 1.7374 30 6 6.1897 0.4341 1.6574 31 1 -0.3633 0.5952 0.8378 32 1 -0.3633 0.4279 -0.9342 33 1 -0.3633 -1.0231 0.0967 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0077 1.5338 -2.1521 37 1 0.5573 2.2018 -1.3658 38 1 2.7777 3.7828 -0.6270 39 1 4.5103 4.9347 -3.2506 40 1 4.5835 6.5217 -2.4474 41 1 4.4287 5.0388 -1.4756 42 1 3.9092 2.2230 -0.3678 43 1 3.5865 0.5265 2.0172 44 1 3.4426 2.3004 2.0469 45 1 5.3814 3.7110 1.6802 46 1 7.8295 3.9124 1.8312 47 1 13.1637 2.4015 1.8180 48 1 8.1759 -0.3491 1.7507 49 1 5.7264 -0.5402 1.6081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494954193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:07 Heat of formation + Delta-G solvation = -19.785010 kcal Electronic energy + Delta-G solvation = -29280.237239 eV Core-core repulsion = 25207.843995 eV Total energy + Delta-G solvation = -4072.393244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57339 -39.20925 -38.20523 -36.90502 -36.55026 -34.61355 -33.55304 -33.15649 -32.27364 -30.25380 -29.76557 -27.77956 -25.80766 -25.49804 -24.35552 -23.81796 -22.02923 -21.38819 -20.68540 -20.53376 -18.58945 -18.05220 -17.68470 -17.07678 -16.40893 -16.17299 -15.58505 -15.45666 -14.94490 -14.64032 -14.51799 -14.39632 -14.18380 -13.88449 -13.74884 -13.66645 -13.54662 -13.33531 -13.04497 -12.93804 -12.78312 -12.70156 -12.60623 -12.47529 -12.22230 -11.93881 -11.89167 -11.84167 -11.66712 -11.42234 -11.30505 -10.93553 -10.78218 -10.71427 -10.59815 -10.48429 -10.29987 -9.55405 -9.40887 -8.90609 -8.55638 -8.25353 -7.26671 -6.51382 -4.10510 2.05601 2.11678 2.14227 2.19310 2.46448 2.89480 3.07496 3.08542 3.13496 3.41182 3.90248 3.95193 4.16763 4.35648 4.38769 4.50966 4.54992 4.74071 4.86844 5.03468 5.05140 5.11519 5.18082 5.20042 5.21904 5.24211 5.28331 5.37077 5.46301 5.54498 5.62709 5.64238 5.70855 5.78330 5.86082 5.88176 5.93331 6.09561 6.14091 6.34880 6.62868 6.80474 6.86749 6.89890 6.97243 7.17115 7.21971 7.23331 7.32672 7.37390 7.65924 7.75166 7.93112 8.94086 9.63888 10.66473 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008579 B = 0.002659 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.058208 B =10529.343273 C =13419.993726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C 0.075 3.925 4 H 0.052 0.948 5 C 0.114 3.886 6 N -0.725 5.725 7 C 0.526 3.474 8 O -0.526 6.526 9 C -0.012 4.012 10 H 0.141 0.859 11 C -0.147 4.147 12 C 0.221 3.779 13 N -0.412 5.412 14 N -0.681 5.681 15 C 0.118 3.882 16 C -0.191 4.191 17 C -0.067 4.067 18 C -0.235 4.235 19 C 0.156 3.844 20 O -0.176 6.176 21 C -0.393 4.393 22 H 0.092 0.908 23 C 0.040 3.960 24 N -0.861 5.861 25 Si 0.940 3.060 26 H -0.273 1.273 27 H -0.277 1.277 28 H -0.267 1.267 29 C -0.194 4.194 30 C -0.050 4.050 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.402 0.598 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.341 0.659 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.102 0.898 46 H 0.126 0.874 47 H 0.271 0.729 48 H 0.116 0.884 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.132 2.047 -0.650 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C -0.035 4.035 4 H 0.070 0.930 5 C -0.009 4.009 6 N -0.378 5.378 7 C 0.309 3.691 8 O -0.401 6.401 9 C -0.036 4.036 10 H 0.159 0.841 11 C -0.206 4.206 12 C -0.098 4.098 13 N -0.087 5.087 14 N -0.315 5.315 15 C -0.009 4.009 16 C -0.192 4.192 17 C -0.085 4.085 18 C -0.254 4.254 19 C 0.102 3.898 20 O -0.079 6.079 21 C -0.469 4.469 22 H 0.110 0.890 23 C -0.165 4.165 24 N -0.495 5.495 25 Si 0.765 3.235 26 H -0.199 1.199 27 H -0.202 1.202 28 H -0.192 1.192 29 C -0.214 4.214 30 C -0.069 4.069 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.161 0.839 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.120 0.880 46 H 0.144 0.856 47 H 0.081 0.919 48 H 0.134 0.866 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.578 1.623 -2.841 20.837 hybrid contribution 0.600 1.752 1.030 2.119 sum -19.979 3.375 -1.810 20.343 Atomic orbital electron populations 1.21856 0.95907 1.01936 1.01757 1.21465 0.94729 0.95138 1.03443 1.21877 0.89244 0.96863 0.95548 0.92994 1.21755 0.98770 0.81611 0.98782 1.45927 1.53852 1.16718 1.21309 1.19967 0.80685 0.86025 0.82392 1.90798 1.38395 1.74551 1.36388 1.18861 0.99599 0.93709 0.91456 0.84143 1.21852 0.89132 1.04853 1.04742 1.28058 0.93791 0.93803 0.94142 1.81202 1.07616 1.09422 1.10428 1.60608 1.06664 1.50827 1.13387 1.20710 0.92450 1.00248 0.87535 1.19094 0.93563 0.93367 1.13161 1.20547 0.94073 0.95664 0.98251 1.21101 0.93597 0.98949 1.11762 1.19417 0.84973 0.93366 0.92021 1.83983 1.14602 1.31351 1.78011 1.21312 0.90885 0.81750 1.52942 0.89047 1.25298 0.95047 0.99656 0.96483 1.70035 1.04212 1.29559 1.45737 0.85722 0.78797 0.80246 0.78723 1.19873 1.20227 1.19170 1.20247 0.94361 0.95528 1.11225 1.20470 0.92312 0.97223 0.96889 0.92837 0.92580 0.92452 0.90943 0.91183 0.90103 0.90400 0.76269 0.90661 0.89912 0.89572 0.83883 0.90934 0.95310 0.87997 0.85637 0.91940 0.86592 0.87045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 9.54 37.16 0.35 -0.59 16 2 C -0.11 -0.78 5.68 -26.73 -0.15 -0.93 16 3 C 0.07 0.53 2.28 -67.71 -0.15 0.37 16 4 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 5 C 0.11 0.84 4.93 -4.04 -0.02 0.82 16 6 N -0.72 -4.59 4.85 -60.29 -0.29 -4.88 16 7 C 0.53 4.44 7.14 -10.98 -0.08 4.36 16 8 O -0.53 -6.91 16.03 5.56 0.09 -6.83 16 9 C -0.01 -0.07 3.10 -94.56 -0.29 -0.36 16 10 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 11 C -0.15 -0.73 9.05 37.16 0.34 -0.39 16 12 C 0.22 2.26 13.88 -20.76 -0.29 1.97 16 13 N -0.41 -5.48 18.54 42.16 0.78 -4.70 16 14 N -0.68 -6.22 6.32 -107.99 -0.68 -6.90 16 15 C 0.12 1.22 5.68 -4.98 -0.03 1.20 16 16 C -0.19 -2.71 5.35 -104.58 -0.56 -3.27 16 17 C -0.07 -1.01 9.69 -39.61 -0.38 -1.39 16 18 C -0.23 -4.55 9.17 -39.40 -0.36 -4.91 16 19 C 0.16 3.52 6.65 -39.11 -0.26 3.26 16 20 O -0.18 -4.81 9.76 0.07 0.00 -4.81 16 21 C -0.39 -10.45 9.49 30.89 0.29 -10.16 16 22 H 0.09 2.22 5.20 -52.48 -0.27 1.94 16 23 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 24 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 25 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 28 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 29 C -0.19 -3.83 9.99 -39.39 -0.39 -4.22 16 30 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 6.96 -51.93 -0.36 -0.03 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.57 6.95 -51.93 -0.36 0.21 16 38 H 0.40 1.69 6.86 -40.82 -0.28 1.41 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.30 7.56 -51.93 -0.39 -0.09 16 42 H 0.34 3.02 6.66 -39.29 -0.26 2.76 16 43 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 44 H 0.03 0.26 7.88 -51.93 -0.41 -0.15 16 45 H 0.10 1.19 8.06 -52.48 -0.42 0.76 16 46 H 0.13 2.45 5.64 -52.49 -0.30 2.15 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 49 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 413.03 15.07 6.22 6.22 Total: -1.00 -33.90 413.03 -7.81 -41.71 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.19 Total: 3.84 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.47 Total: -14.49 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.56 Total: -40.25 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.90 -7.81 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494954193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.921 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds