Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47647 * 2 1 4 4 H 1.08997 * 109.47170 * 54.63647 * 3 2 1 5 5 C 1.53009 * 109.46924 * 294.64168 * 3 2 1 6 6 N 1.46500 * 109.46923 * 184.99870 * 5 3 2 7 7 C 1.34776 * 119.99467 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00362 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99599 * 179.97438 * 7 6 5 10 10 H 1.09003 * 109.46716 * 299.99863 * 9 7 6 11 11 C 1.52997 * 109.47293 * 59.99783 * 9 7 6 12 12 C 1.47195 * 109.47338 * 180.02562 * 9 7 6 13 13 N 8.28421 * 92.87563 * 325.20435 * 2 1 3 14 14 N 1.46895 * 109.47460 * 174.64348 * 3 2 1 15 15 C 1.46904 * 110.99726 * 271.43192 * 14 3 2 16 16 C 1.50694 * 109.47217 * 184.77516 * 15 14 3 17 17 C 1.38309 * 119.93120 * 90.00077 * 16 15 14 18 18 C 1.38099 * 120.06955 * 180.02562 * 17 16 15 19 19 C 1.38872 * 119.93173 * 359.97438 * 18 17 16 20 20 O 1.35753 * 120.06884 * 180.02562 * 19 18 17 21 21 C 1.34820 * 116.99940 * 354.85963 * 20 19 18 22 22 H 1.08005 * 120.00429 * 5.11197 * 21 20 19 23 23 C 1.38661 * 120.00016 * 185.10067 * 21 20 19 24 24 N 1.31554 * 119.99999 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99857 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47087 * 90.00623 * 25 23 21 27 27 H 1.48499 * 109.46779 * 210.00016 * 25 23 21 28 28 H 1.48496 * 109.47353 * 330.00309 * 25 23 21 29 29 C 1.38883 * 119.86418 * 0.27232 * 19 18 17 30 30 C 1.38103 * 119.92604 * 359.49591 * 29 19 18 31 31 H 1.09003 * 109.46853 * 305.38980 * 1 2 3 32 32 H 1.08992 * 109.47337 * 65.38968 * 1 2 3 33 33 H 1.09000 * 109.46875 * 185.39677 * 1 2 3 34 34 H 1.09000 * 109.46741 * 239.99955 * 2 1 3 35 35 H 1.09003 * 109.47266 * 120.00557 * 2 1 3 36 36 H 1.09000 * 109.46580 * 304.99631 * 5 3 2 37 37 H 1.09000 * 109.47044 * 64.99750 * 5 3 2 38 38 H 0.96994 * 120.00164 * 359.97438 * 6 5 3 39 39 H 1.09000 * 109.47348 * 59.99612 * 11 9 7 40 40 H 1.08996 * 109.46951 * 180.02562 * 11 9 7 41 41 H 1.09000 * 109.47252 * 300.00154 * 11 9 7 42 42 H 1.00902 * 111.00068 * 147.48111 * 14 3 2 43 43 H 1.09001 * 109.47074 * 64.77875 * 15 14 3 44 44 H 1.08998 * 109.47172 * 304.77601 * 15 14 3 45 45 H 1.08003 * 119.96330 * 0.02562 * 17 16 15 46 46 H 1.07996 * 120.03156 * 179.97438 * 18 17 16 47 47 H 0.97004 * 119.99671 * 179.97438 * 24 23 21 48 48 H 1.07998 * 120.03387 * 179.72948 * 29 19 18 49 49 H 1.07996 * 119.96157 * 180.23545 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6005 1.9833 0.8380 5 6 1.6431 2.1238 -1.3112 6 7 2.2323 3.4640 -1.3630 7 6 2.0157 4.2544 -2.4330 8 8 1.3334 3.8560 -3.3530 9 6 2.6214 5.6334 -2.4860 10 1 2.2566 6.2230 -1.6448 11 6 4.1455 5.5243 -2.4095 12 6 2.2386 6.2893 -3.7469 13 7 1.9456 6.7944 -4.7214 14 7 3.5034 1.4444 0.1293 15 6 3.9070 1.4535 1.5418 16 6 5.4062 1.5736 1.6350 17 6 5.9959 2.8231 1.6977 18 6 7.3696 2.9364 1.7827 19 6 8.1591 1.7941 1.8057 20 8 9.5097 1.9023 1.8897 21 6 10.0284 3.1457 1.8401 22 1 9.3730 4.0040 1.8211 23 6 11.4034 3.3228 1.8138 24 7 12.2018 2.2775 1.8368 25 14 12.1220 5.0458 1.7458 26 1 12.3333 5.5488 3.1270 27 1 13.4211 5.0122 1.0272 28 1 11.1831 5.9459 1.0294 29 6 7.5643 0.5409 1.7374 30 6 6.1897 0.4341 1.6574 31 1 -0.3633 0.5952 0.8378 32 1 -0.3633 0.4279 -0.9342 33 1 -0.3633 -1.0231 0.0967 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.0077 1.5338 -2.1521 37 1 0.5573 2.2018 -1.3658 38 1 2.7777 3.7828 -0.6270 39 1 4.5103 4.9347 -3.2506 40 1 4.5835 6.5217 -2.4474 41 1 4.4287 5.0388 -1.4756 42 1 3.9092 2.2230 -0.3678 43 1 3.5865 0.5265 2.0172 44 1 3.4426 2.3004 2.0469 45 1 5.3814 3.7110 1.6802 46 1 7.8295 3.9124 1.8312 47 1 13.1637 2.4015 1.8180 48 1 8.1759 -0.3491 1.7507 49 1 5.7264 -0.5402 1.6081 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494954193.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = -43.807896 kcal Electronic energy + Delta-G solvation = -29281.278949 eV Core-core repulsion = 25207.843995 eV Total energy + Delta-G solvation = -4073.434954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.24630 -40.70048 -39.10799 -38.06585 -37.58217 -35.33439 -34.49747 -34.02939 -33.69540 -31.67940 -30.85580 -28.61056 -27.36595 -26.20988 -25.25088 -24.57162 -23.50501 -22.05144 -21.88910 -21.26694 -19.78265 -19.25890 -18.75103 -18.24871 -17.08709 -16.87347 -16.48461 -16.34376 -16.18540 -16.08809 -15.51278 -15.45385 -15.21646 -15.05463 -15.02499 -14.45902 -14.36426 -14.23320 -14.04850 -13.91753 -13.74787 -13.64707 -13.61581 -13.27327 -13.25366 -12.90701 -12.79235 -12.62656 -12.45839 -12.41421 -12.30351 -12.22855 -12.09626 -11.96088 -11.74771 -11.39351 -11.07524 -10.98260 -10.74380 -10.18037 -9.66973 -9.25481 -8.81000 -8.42079 -6.09682 0.71536 0.77394 1.38946 1.39802 1.45010 1.48039 1.56191 1.70493 2.21646 2.25915 2.79224 2.85520 3.15714 3.47182 3.61611 3.65219 3.77661 3.93513 4.08312 4.16325 4.16945 4.26000 4.33318 4.35204 4.52490 4.59540 4.67968 4.72234 4.74851 4.81044 4.84339 4.88810 4.91595 4.96227 5.02402 5.19412 5.23329 5.29185 5.31780 5.32527 5.39638 5.42469 5.55933 5.68188 5.80789 5.91207 6.09639 6.18853 6.31754 6.36196 6.50732 6.56344 7.03399 7.09010 7.87028 8.81620 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008579 B = 0.002659 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3263.058208 B =10529.343273 C =13419.993726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C 0.086 3.914 4 H 0.073 0.927 5 C 0.117 3.883 6 N -0.708 5.708 7 C 0.526 3.474 8 O -0.580 6.580 9 C -0.003 4.003 10 H 0.191 0.809 11 C -0.147 4.147 12 C 0.241 3.759 13 N -0.477 5.477 14 N -0.692 5.692 15 C 0.122 3.878 16 C -0.158 4.158 17 C -0.056 4.056 18 C -0.241 4.241 19 C 0.111 3.889 20 O -0.238 6.238 21 C -0.408 4.408 22 H 0.107 0.893 23 C -0.027 4.027 24 N -0.925 5.925 25 Si 1.017 2.983 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.247 1.247 29 C -0.213 4.213 30 C -0.050 4.050 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.417 0.583 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.344 0.656 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.154 0.846 46 H 0.120 0.880 47 H 0.270 0.730 48 H 0.102 0.898 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.432 3.909 0.809 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.023 4.023 4 H 0.091 0.909 5 C -0.006 4.006 6 N -0.361 5.361 7 C 0.311 3.689 8 O -0.460 6.460 9 C -0.027 4.027 10 H 0.208 0.792 11 C -0.205 4.205 12 C -0.077 4.077 13 N -0.153 5.153 14 N -0.327 5.327 15 C -0.005 4.005 16 C -0.159 4.159 17 C -0.074 4.074 18 C -0.260 4.260 19 C 0.061 3.939 20 O -0.145 6.145 21 C -0.484 4.484 22 H 0.124 0.876 23 C -0.223 4.223 24 N -0.564 5.564 25 Si 0.836 3.164 26 H -0.190 1.190 27 H -0.202 1.202 28 H -0.170 1.170 29 C -0.232 4.232 30 C -0.068 4.068 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.255 0.745 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.128 0.872 42 H 0.165 0.835 43 H 0.098 0.902 44 H 0.078 0.922 45 H 0.172 0.828 46 H 0.138 0.862 47 H 0.079 0.921 48 H 0.120 0.880 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.936 3.481 -1.347 24.225 hybrid contribution 1.214 0.977 0.585 1.665 sum -22.722 4.457 -0.762 23.167 Atomic orbital electron populations 1.21821 0.95033 1.02217 1.02052 1.21453 0.95483 0.95154 1.02686 1.21810 0.87830 0.96862 0.95824 0.90877 1.21663 0.98910 0.81768 0.98300 1.45767 1.53224 1.16005 1.21124 1.20346 0.79837 0.86792 0.81888 1.90792 1.40996 1.75759 1.38409 1.19169 1.00189 0.92425 0.90889 0.79213 1.21919 0.87956 1.05546 1.05115 1.28905 0.92026 0.92443 0.94338 1.81210 1.09820 1.11764 1.12525 1.60489 1.08134 1.51433 1.12596 1.20719 0.89008 1.02170 0.88637 1.19652 0.96019 0.92228 1.08045 1.21035 0.92478 0.98051 0.95838 1.21260 0.95445 0.97557 1.11718 1.19998 0.84114 0.95576 0.94252 1.83948 1.17195 1.31846 1.81524 1.21842 0.91624 0.82387 1.52525 0.87588 1.26593 0.95290 1.04330 0.96132 1.70198 1.04390 1.32425 1.49397 0.84606 0.77909 0.74715 0.79145 1.18973 1.20233 1.17009 1.20450 0.96152 0.94418 1.12181 1.20840 0.90740 0.99552 0.95709 0.91873 0.92779 0.92420 0.92321 0.91346 0.92116 0.90196 0.74467 0.92695 0.88762 0.87154 0.83504 0.90160 0.92208 0.82801 0.86191 0.92066 0.88014 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.54 71.98 0.69 -0.70 16 2 C -0.11 -1.20 5.68 30.59 0.17 -1.03 16 3 C 0.09 0.82 2.28 44.92 0.10 0.92 16 4 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 5 C 0.12 1.34 4.93 86.38 0.43 1.76 16 6 N -0.71 -6.02 4.85 -463.04 -2.25 -8.27 16 7 C 0.53 7.40 7.14 87.66 0.63 8.02 16 8 O -0.58 -14.67 16.03 -3.02 -0.05 -14.72 16 9 C 0.00 -0.02 3.10 -13.35 -0.04 -0.07 16 10 H 0.19 -0.25 8.14 -2.39 -0.02 -0.27 16 11 C -0.15 -0.91 9.05 71.98 0.65 -0.26 16 12 C 0.24 4.58 13.88 89.44 1.24 5.82 16 13 N -0.48 -12.69 18.54 20.01 0.37 -12.32 16 14 N -0.69 -9.07 6.32 -495.58 -3.13 -12.20 16 15 C 0.12 1.76 5.68 85.55 0.49 2.25 16 16 C -0.16 -3.75 5.35 -19.83 -0.11 -3.86 16 17 C -0.06 -1.42 9.69 22.25 0.22 -1.20 16 18 C -0.24 -8.98 9.17 22.39 0.21 -8.78 16 19 C 0.11 5.14 6.65 22.58 0.15 5.29 16 20 O -0.24 -13.84 9.76 -22.67 -0.22 -14.06 16 21 C -0.41 -22.64 9.49 67.92 0.64 -22.00 16 22 H 0.11 5.24 5.20 -2.91 -0.02 5.23 16 23 C -0.03 -1.47 5.49 84.84 0.47 -1.00 16 24 N -0.93 -56.04 13.67 21.61 0.30 -55.75 16 25 Si 1.02 41.06 29.55 68.60 2.03 43.08 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 29 C -0.21 -8.54 9.99 22.39 0.22 -8.31 16 30 C -0.05 -1.48 9.69 22.25 0.22 -1.27 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.51 6.96 -2.39 -0.02 0.50 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.80 7.70 -2.39 -0.02 0.78 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.94 6.95 -2.39 -0.02 0.92 16 38 H 0.42 1.02 6.86 -92.71 -0.64 0.38 16 39 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.11 0.17 7.56 -2.39 -0.02 0.15 16 42 H 0.34 4.20 6.66 -89.69 -0.60 3.60 16 43 H 0.08 1.15 7.65 -2.39 -0.02 1.13 16 44 H 0.06 0.59 7.88 -2.39 -0.02 0.57 16 45 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.12 4.55 5.64 -2.91 -0.02 4.53 16 47 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 48 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 49 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -83.96 413.03 3.16 -80.80 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -0.25 Total: 17.85 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 6.37 Total: -24.41 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -4.71 Total: -88.54 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.27 Total: -28.78 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -83.96 3.16 -80.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494954193.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.991 kcal (2) G-P(sol) polarization free energy of solvation -83.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds