Wall clock time and date at job start Wed Apr 1 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47510 * 2 1 4 4 N 1.46495 * 109.47727 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99935 * 265.79094 * 4 3 2 6 6 H 1.08003 * 120.00376 * 146.21164 * 5 4 3 7 7 C 1.38806 * 119.99926 * 326.20502 * 5 4 3 8 8 N 1.31617 * 120.00138 * 337.69341 * 7 5 4 9 9 Si 1.86799 * 120.00132 * 157.69482 * 7 5 4 10 10 H 1.48499 * 109.47369 * 59.99868 * 9 7 5 11 11 H 1.48499 * 109.47240 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47023 * 299.99993 * 9 7 5 13 13 C 1.46500 * 119.99917 * 85.78297 * 4 3 2 14 14 C 1.53004 * 109.47110 * 90.00682 * 13 4 3 15 15 N 1.46500 * 109.47110 * 179.97438 * 14 13 4 16 16 C 1.34776 * 120.00045 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99719 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00175 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.46323 * 299.98439 * 18 16 15 20 20 C 1.52910 * 109.46046 * 59.94656 * 18 16 15 21 21 C 1.50492 * 109.91248 * 71.45690 * 20 18 16 22 22 O 1.21287 * 119.62172 * 215.17840 * 21 20 18 23 23 N 1.34572 * 120.76689 * 35.17989 * 21 20 18 24 24 C 1.39823 * 120.45199 * 359.19020 * 23 21 20 25 25 C 1.38858 * 120.18908 * 161.51906 * 24 23 21 26 26 C 1.38106 * 119.88941 * 179.97438 * 25 24 23 27 27 C 1.38301 * 120.09375 * 359.97438 * 26 25 24 28 28 C 1.38280 * 120.14698 * 0.27245 * 27 26 25 29 29 C 1.38089 * 120.02579 * 359.47997 * 28 27 26 30 30 H 1.09002 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46998 * 299.99742 * 1 2 3 32 32 H 1.08988 * 109.47333 * 59.99799 * 1 2 3 33 33 H 1.09000 * 109.47055 * 239.99719 * 2 1 3 34 34 H 1.09002 * 109.47593 * 120.00226 * 2 1 3 35 35 H 1.09000 * 109.47190 * 59.99802 * 3 2 1 36 36 H 1.09005 * 109.46870 * 300.00137 * 3 2 1 37 37 H 0.96999 * 120.00055 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47446 * 330.00219 * 13 4 3 39 39 H 1.09007 * 109.47233 * 210.00220 * 13 4 3 40 40 H 1.08998 * 109.46852 * 59.99646 * 14 13 4 41 41 H 1.08995 * 109.46528 * 299.99453 * 14 13 4 42 42 H 0.97002 * 120.00103 * 359.97438 * 15 14 13 43 43 H 1.09000 * 109.39743 * 191.59316 * 20 18 16 44 44 H 1.09006 * 109.39604 * 311.32266 * 20 18 16 45 45 H 0.97002 * 119.77425 * 179.16120 * 23 21 20 46 46 H 1.07998 * 120.05907 * 359.97438 * 25 24 23 47 47 H 1.08007 * 119.95444 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.93045 * 180.02562 * 27 26 25 49 49 H 1.08004 * 119.98683 * 179.74346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5294 1.1818 6 1 5.1334 1.0165 1.2984 7 6 3.6724 2.2768 2.2306 8 7 2.7989 3.2315 1.9901 9 14 4.2154 1.9278 3.9836 10 1 5.6834 2.1220 4.0951 11 1 3.5208 2.8565 4.9111 12 1 3.8731 0.5269 4.3381 13 6 4.2369 1.3494 -1.2662 14 6 4.4918 2.7557 -1.8126 15 7 5.2243 2.6626 -3.0779 16 6 5.5607 3.7838 -3.7459 17 8 5.2573 4.8698 -3.2992 18 6 6.3146 3.6882 -5.0472 19 1 7.2674 3.1863 -4.8788 20 6 5.4895 2.8890 -6.0564 21 6 4.3059 3.7011 -6.5084 22 8 3.2538 3.1464 -6.7459 23 7 4.4012 5.0357 -6.6520 24 6 5.6006 5.6953 -6.3668 25 6 5.8305 6.9718 -6.8626 26 6 7.0172 7.6178 -6.5766 27 6 7.9753 6.9953 -5.7974 28 6 7.7513 5.7221 -5.3065 29 6 6.5646 5.0731 -5.5848 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.4368 3.7536 2.7230 38 1 3.6476 0.7813 -1.9859 39 1 5.1895 0.8465 -1.0990 40 1 5.0812 3.3238 -1.0929 41 1 3.5393 3.2585 -1.9799 42 1 5.4672 1.7940 -3.4350 43 1 6.1103 2.6435 -6.9181 44 1 5.1397 1.9681 -5.5897 45 1 3.6326 5.5436 -6.9559 46 1 5.0826 7.4588 -7.4708 47 1 7.1970 8.6109 -6.9614 48 1 8.9023 7.5031 -5.5751 49 1 8.5031 5.2368 -4.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663676295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:36 Heat of formation + Delta-G solvation = -34.848102 kcal Electronic energy + Delta-G solvation = -30386.033836 eV Core-core repulsion = 26312.987408 eV Total energy + Delta-G solvation = -4073.046429 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.49499 -39.13609 -38.76396 -36.44892 -35.39834 -34.42817 -34.18530 -32.41054 -31.29437 -30.35185 -29.60377 -27.96801 -25.64087 -25.52797 -23.53334 -22.92616 -22.80371 -21.36730 -20.81581 -19.85407 -19.05887 -18.16938 -17.54046 -16.96162 -16.69292 -16.15078 -15.89769 -15.20109 -14.98805 -14.80564 -14.75276 -14.60197 -14.12449 -13.95954 -13.85267 -13.58127 -13.43265 -13.07834 -13.00769 -12.81624 -12.52318 -12.41198 -12.24257 -11.73436 -11.54247 -11.37597 -11.32477 -11.02407 -10.86793 -10.85966 -10.76734 -10.47476 -10.35105 -10.25304 -9.97326 -9.90522 -9.63845 -9.49801 -9.04447 -8.61193 -8.48929 -8.22936 -6.67290 -5.80926 -3.35874 0.98040 1.11347 2.34043 2.76692 2.84662 3.30662 3.36862 3.43122 3.44778 3.71776 4.04175 4.23563 4.39988 4.47148 4.57695 4.77440 4.83056 5.04652 5.07213 5.14896 5.24052 5.29060 5.31222 5.49263 5.59211 5.69616 5.85761 5.89255 5.91620 5.96037 6.04831 6.14685 6.22779 6.30256 6.32806 6.45353 6.54535 6.60905 6.64905 6.72662 6.79765 6.85516 6.91353 6.96235 7.05013 7.28156 7.75463 7.76820 7.78522 7.81362 8.45606 8.49695 9.15383 9.78202 10.33786 11.19677 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.002730 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.880608 B =10253.412728 C =11552.155010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.143 3.857 4 N -0.578 5.578 5 C -0.265 4.265 6 H 0.063 0.937 7 C 0.012 3.988 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.139 3.861 14 C 0.099 3.901 15 N -0.722 5.722 16 C 0.505 3.495 17 O -0.524 6.524 18 C -0.068 4.068 19 H 0.122 0.878 20 C -0.132 4.132 21 C 0.522 3.478 22 O -0.522 6.522 23 N -0.660 5.660 24 C 0.174 3.826 25 C -0.154 4.154 26 C -0.087 4.087 27 C -0.142 4.142 28 C -0.070 4.070 29 C -0.097 4.097 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.020 0.980 37 H 0.256 0.744 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.394 0.606 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.412 0.588 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.126 0.874 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.243 2.520 -19.449 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.298 5.298 5 C -0.394 4.394 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.526 5.526 9 Si 0.728 3.272 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.012 3.988 14 C -0.026 4.026 15 N -0.373 5.373 16 C 0.289 3.711 17 O -0.400 6.400 18 C -0.090 4.090 19 H 0.140 0.860 20 C -0.172 4.172 21 C 0.310 3.690 22 O -0.397 6.397 23 N -0.304 5.304 24 C 0.078 3.922 25 C -0.175 4.175 26 C -0.106 4.106 27 C -0.161 4.161 28 C -0.089 4.089 29 C -0.100 4.100 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.227 0.773 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.249 0.751 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.421 2.942 -19.025 21.012 hybrid contribution 0.022 -0.113 0.696 0.706 sum 8.443 2.830 -18.329 20.377 Atomic orbital electron populations 1.21692 0.97490 0.99947 1.01176 1.22073 0.93751 1.01549 1.00534 1.21061 0.82968 0.92297 1.01987 1.43845 1.01180 1.84341 1.00386 1.19040 1.06095 1.24804 0.89480 0.91916 1.25120 0.99630 0.94882 0.99245 1.69984 1.32722 1.18832 1.31036 0.86437 0.78316 0.77770 0.84663 1.20727 1.21597 1.20882 1.21085 0.96308 0.92238 0.89211 1.22475 0.95658 1.02196 0.82260 1.46214 1.58181 1.07936 1.25015 1.20292 0.80327 0.85048 0.85457 1.90750 1.53613 1.27352 1.68270 1.20291 1.00899 0.94408 0.93424 0.86016 1.21745 0.95426 0.99179 1.00841 1.20586 0.90150 0.82027 0.76227 1.90800 1.29867 1.70043 1.48984 1.43559 1.13253 1.07930 1.65691 1.17561 0.85912 0.92804 0.95946 1.20725 0.99217 0.94042 1.03510 1.20954 0.92873 0.99428 0.97296 1.21066 1.00044 0.95247 0.99728 1.20825 0.95736 0.94774 0.97572 1.18888 0.95382 0.95955 0.99825 0.94131 0.93055 0.93603 0.94195 0.92485 0.88149 0.96201 0.93376 0.94208 0.93387 0.91068 0.92384 0.77326 0.86682 0.86718 0.75051 0.85482 0.85512 0.85639 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.15 0.37 -2.11 16 2 C -0.14 -2.79 6.26 -26.73 -0.17 -2.95 16 3 C 0.14 3.35 5.25 -4.05 -0.02 3.33 16 4 N -0.58 -13.99 2.45 -173.24 -0.43 -14.41 16 5 C -0.26 -7.05 9.49 -15.06 -0.14 -7.19 16 6 H 0.06 1.65 7.92 -52.48 -0.42 1.23 16 7 C 0.01 0.32 4.93 -17.43 -0.09 0.24 16 8 N -0.88 -25.34 11.32 55.49 0.63 -24.71 16 9 Si 0.90 21.39 29.61 -169.99 -5.03 16.36 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 2.76 5.80 -4.04 -0.02 2.74 16 14 C 0.10 1.99 6.00 -4.04 -0.02 1.96 16 15 N -0.72 -10.92 5.36 -60.30 -0.32 -11.25 16 16 C 0.51 7.90 6.80 -10.99 -0.07 7.82 16 17 O -0.52 -10.78 16.03 5.56 0.09 -10.70 16 18 C -0.07 -0.72 2.76 -92.99 -0.26 -0.98 16 19 H 0.12 0.88 8.06 -51.93 -0.42 0.46 16 20 C -0.13 -1.25 5.49 -28.03 -0.15 -1.40 16 21 C 0.52 6.80 7.37 -11.18 -0.08 6.72 16 22 O -0.52 -8.60 17.91 5.55 0.10 -8.50 16 23 N -0.66 -7.72 5.36 -10.01 -0.05 -7.78 16 24 C 0.17 1.97 6.50 -83.76 -0.54 1.42 16 25 C -0.15 -1.45 9.92 -39.40 -0.39 -1.84 16 26 C -0.09 -0.74 10.04 -39.61 -0.40 -1.13 16 27 C -0.14 -1.25 10.04 -39.54 -0.40 -1.65 16 28 C -0.07 -0.70 9.69 -39.62 -0.38 -1.08 16 29 C -0.10 -1.10 4.15 -104.47 -0.43 -1.54 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.74 8.14 -51.94 -0.42 0.32 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 2.68 5.32 -51.93 -0.28 2.41 16 36 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 39 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 40 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.39 4.46 7.80 -40.82 -0.32 4.14 16 43 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.11 0.99 7.27 -51.93 -0.38 0.62 16 45 H 0.41 4.23 8.83 -40.82 -0.36 3.87 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 48 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 49 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -35.07 404.86 -9.76 -44.84 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.63 Total: 7.69 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -3.21 Total: 2.36 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.17 Total: -58.15 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.19 Total: -19.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.07 -9.76 -44.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663676295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.988 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds