Wall clock time and date at job start Wed Apr 1 2020 03:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47510 * 2 1 4 4 N 1.46495 * 109.47727 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99935 * 265.79094 * 4 3 2 6 6 H 1.08003 * 120.00376 * 146.21164 * 5 4 3 7 7 C 1.38806 * 119.99926 * 326.20502 * 5 4 3 8 8 N 1.31617 * 120.00138 * 337.69341 * 7 5 4 9 9 Si 1.86799 * 120.00132 * 157.69482 * 7 5 4 10 10 H 1.48499 * 109.47369 * 59.99868 * 9 7 5 11 11 H 1.48499 * 109.47240 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47023 * 299.99993 * 9 7 5 13 13 C 1.46500 * 119.99917 * 85.78297 * 4 3 2 14 14 C 1.53004 * 109.47110 * 90.00682 * 13 4 3 15 15 N 1.46500 * 109.47110 * 179.97438 * 14 13 4 16 16 C 1.34776 * 120.00045 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99719 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00175 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.46323 * 299.98439 * 18 16 15 20 20 C 1.52910 * 109.46046 * 59.94656 * 18 16 15 21 21 C 1.50492 * 109.91248 * 71.45690 * 20 18 16 22 22 O 1.21287 * 119.62172 * 215.17840 * 21 20 18 23 23 N 1.34572 * 120.76689 * 35.17989 * 21 20 18 24 24 C 1.39823 * 120.45199 * 359.19020 * 23 21 20 25 25 C 1.38858 * 120.18908 * 161.51906 * 24 23 21 26 26 C 1.38106 * 119.88941 * 179.97438 * 25 24 23 27 27 C 1.38301 * 120.09375 * 359.97438 * 26 25 24 28 28 C 1.38280 * 120.14698 * 0.27245 * 27 26 25 29 29 C 1.38089 * 120.02579 * 359.47997 * 28 27 26 30 30 H 1.09002 * 109.47347 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46998 * 299.99742 * 1 2 3 32 32 H 1.08988 * 109.47333 * 59.99799 * 1 2 3 33 33 H 1.09000 * 109.47055 * 239.99719 * 2 1 3 34 34 H 1.09002 * 109.47593 * 120.00226 * 2 1 3 35 35 H 1.09000 * 109.47190 * 59.99802 * 3 2 1 36 36 H 1.09005 * 109.46870 * 300.00137 * 3 2 1 37 37 H 0.96999 * 120.00055 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47446 * 330.00219 * 13 4 3 39 39 H 1.09007 * 109.47233 * 210.00220 * 13 4 3 40 40 H 1.08998 * 109.46852 * 59.99646 * 14 13 4 41 41 H 1.08995 * 109.46528 * 299.99453 * 14 13 4 42 42 H 0.97002 * 120.00103 * 359.97438 * 15 14 13 43 43 H 1.09000 * 109.39743 * 191.59316 * 20 18 16 44 44 H 1.09006 * 109.39604 * 311.32266 * 20 18 16 45 45 H 0.97002 * 119.77425 * 179.16120 * 23 21 20 46 46 H 1.07998 * 120.05907 * 359.97438 * 25 24 23 47 47 H 1.08007 * 119.95444 * 180.02562 * 26 25 24 48 48 H 1.08004 * 119.93045 * 180.02562 * 27 26 25 49 49 H 1.08004 * 119.98683 * 179.74346 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.5294 1.1818 6 1 5.1334 1.0165 1.2984 7 6 3.6724 2.2768 2.2306 8 7 2.7989 3.2315 1.9901 9 14 4.2154 1.9278 3.9836 10 1 5.6834 2.1220 4.0951 11 1 3.5208 2.8565 4.9111 12 1 3.8731 0.5269 4.3381 13 6 4.2369 1.3494 -1.2662 14 6 4.4918 2.7557 -1.8126 15 7 5.2243 2.6626 -3.0779 16 6 5.5607 3.7838 -3.7459 17 8 5.2573 4.8698 -3.2992 18 6 6.3146 3.6882 -5.0472 19 1 7.2674 3.1863 -4.8788 20 6 5.4895 2.8890 -6.0564 21 6 4.3059 3.7011 -6.5084 22 8 3.2538 3.1464 -6.7459 23 7 4.4012 5.0357 -6.6520 24 6 5.6006 5.6953 -6.3668 25 6 5.8305 6.9718 -6.8626 26 6 7.0172 7.6178 -6.5766 27 6 7.9753 6.9953 -5.7974 28 6 7.7513 5.7221 -5.3065 29 6 6.5646 5.0731 -5.5848 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 2.4368 3.7536 2.7230 38 1 3.6476 0.7813 -1.9859 39 1 5.1895 0.8465 -1.0990 40 1 5.0812 3.3238 -1.0929 41 1 3.5393 3.2585 -1.9799 42 1 5.4672 1.7940 -3.4350 43 1 6.1103 2.6435 -6.9181 44 1 5.1397 1.9681 -5.5897 45 1 3.6326 5.5436 -6.9559 46 1 5.0826 7.4588 -7.4708 47 1 7.1970 8.6109 -6.9614 48 1 8.9023 7.5031 -5.5751 49 1 8.5031 5.2368 -4.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663676295.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:35 Heat of formation + Delta-G solvation = -58.541057 kcal Electronic energy + Delta-G solvation = -30387.061240 eV Core-core repulsion = 26312.987408 eV Total energy + Delta-G solvation = -4074.073832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.40631 -40.39094 -39.64687 -38.22705 -36.28957 -35.93286 -35.12618 -34.17117 -33.04806 -31.15775 -30.38291 -29.56178 -27.41639 -26.64517 -25.00099 -23.87822 -23.61082 -22.98766 -22.04178 -21.59094 -20.07131 -18.97779 -18.74473 -18.46883 -17.91868 -17.28830 -17.04022 -16.71979 -16.27620 -16.19868 -15.83374 -15.80426 -15.44582 -15.38815 -14.97515 -14.78677 -14.64256 -14.49418 -14.15885 -14.02004 -13.60041 -13.50662 -13.41200 -13.23198 -13.14888 -12.80393 -12.56493 -12.50425 -12.25736 -12.21658 -12.13286 -12.05792 -11.77320 -11.72041 -11.67502 -11.30326 -11.23609 -10.93309 -10.52730 -10.09266 -9.79338 -9.03530 -8.66155 -7.84872 -5.43568 0.19229 0.39226 1.43878 1.46299 1.48968 1.55400 1.56893 1.97846 2.16011 2.51932 2.88847 3.23829 3.24248 3.39316 3.60562 3.69272 3.85205 3.94000 4.16518 4.22921 4.30802 4.32772 4.37750 4.38672 4.47561 4.52592 4.56731 4.62505 4.66342 4.71079 4.85322 4.86685 5.02454 5.07145 5.11495 5.16408 5.17809 5.26299 5.35706 5.44241 5.46070 5.56745 5.61088 5.64435 5.67087 5.88681 5.90333 6.14900 6.43636 6.57122 6.84788 7.13399 7.26781 7.83257 8.33656 9.12737 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.002730 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.880608 B =10253.412728 C =11552.155010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.143 3.857 4 N -0.595 5.595 5 C -0.268 4.268 6 H 0.067 0.933 7 C -0.040 4.040 8 N -0.919 5.919 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.297 1.297 12 H -0.276 1.276 13 C 0.143 3.857 14 C 0.124 3.876 15 N -0.709 5.709 16 C 0.500 3.500 17 O -0.580 6.580 18 C -0.054 4.054 19 H 0.166 0.834 20 C -0.127 4.127 21 C 0.510 3.490 22 O -0.570 6.570 23 N -0.660 5.660 24 C 0.148 3.852 25 C -0.161 4.161 26 C -0.089 4.089 27 C -0.145 4.145 28 C -0.081 4.081 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.012 0.988 37 H 0.250 0.750 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.019 0.981 42 H 0.416 0.584 43 H 0.156 0.844 44 H 0.125 0.875 45 H 0.412 0.588 46 H 0.143 0.857 47 H 0.154 0.846 48 H 0.150 0.850 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 1.230 -20.901 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C 0.017 3.983 4 N -0.315 5.315 5 C -0.398 4.398 6 H 0.084 0.916 7 C -0.237 4.237 8 N -0.563 5.563 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.223 1.223 12 H -0.202 1.202 13 C 0.016 3.984 14 C -0.003 4.003 15 N -0.362 5.362 16 C 0.287 3.713 17 O -0.459 6.459 18 C -0.075 4.075 19 H 0.183 0.817 20 C -0.166 4.166 21 C 0.300 3.700 22 O -0.449 6.449 23 N -0.303 5.303 24 C 0.053 3.947 25 C -0.181 4.181 26 C -0.107 4.107 27 C -0.163 4.163 28 C -0.099 4.099 29 C -0.122 4.122 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.037 0.963 42 H 0.254 0.746 43 H 0.174 0.826 44 H 0.143 0.857 45 H 0.250 0.750 46 H 0.161 0.839 47 H 0.172 0.828 48 H 0.167 0.833 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.678 1.622 -20.518 23.187 hybrid contribution -0.606 0.413 1.052 1.283 sum 10.071 2.035 -19.465 22.011 Atomic orbital electron populations 1.21644 0.95241 1.01745 1.01124 1.21888 0.95692 0.98598 1.00487 1.20968 0.83048 0.94309 0.99952 1.44077 1.01613 1.84488 1.01362 1.19346 1.06028 1.23849 0.90625 0.91568 1.25834 1.00247 0.94948 1.02698 1.70146 1.34517 1.20169 1.31505 0.85476 0.78025 0.77464 0.80319 1.19961 1.22317 1.20180 1.21178 0.97132 0.92054 0.88018 1.21816 0.93534 1.01346 0.83646 1.45929 1.57435 1.09484 1.23339 1.21299 0.79434 0.83875 0.86708 1.90726 1.55736 1.29456 1.70009 1.20308 1.01866 0.95182 0.90111 0.81651 1.21867 0.94327 0.98426 1.01993 1.21320 0.90676 0.82501 0.75510 1.90770 1.31712 1.70915 1.51457 1.43610 1.13728 1.07902 1.65080 1.17859 0.85813 0.93767 0.97238 1.21048 1.00138 0.93517 1.03417 1.21348 0.92219 1.00457 0.96672 1.21458 1.00986 0.94973 0.98927 1.21142 0.95750 0.95378 0.97676 1.19103 0.96055 0.96542 1.00453 0.91333 0.94024 0.92830 0.92583 0.93972 0.91507 0.96957 0.94081 0.91707 0.91514 0.95190 0.96264 0.74615 0.82646 0.85669 0.74991 0.83880 0.82832 0.83269 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.91 71.98 0.71 -3.88 16 2 C -0.13 -4.98 6.26 30.59 0.19 -4.79 16 3 C 0.14 6.87 5.25 86.38 0.45 7.32 16 4 N -0.60 -29.12 2.45 -702.00 -1.72 -30.85 16 5 C -0.27 -14.43 9.49 84.03 0.80 -13.63 16 6 H 0.07 3.45 7.92 -2.91 -0.02 3.43 16 7 C -0.04 -2.23 4.93 84.86 0.42 -1.81 16 8 N -0.92 -54.83 11.32 21.65 0.25 -54.59 16 9 Si 0.96 44.64 29.61 68.60 2.03 46.67 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 C 0.14 5.59 5.80 86.38 0.50 6.09 16 14 C 0.12 5.09 6.00 86.38 0.52 5.61 16 15 N -0.71 -20.92 5.36 -463.07 -2.48 -23.40 16 16 C 0.50 15.40 6.80 87.66 0.60 15.99 16 17 O -0.58 -24.57 16.03 -3.04 -0.05 -24.62 16 18 C -0.05 -1.01 2.76 -12.33 -0.03 -1.04 16 19 H 0.17 1.66 8.06 -2.39 -0.02 1.64 16 20 C -0.13 -2.09 5.49 29.75 0.16 -1.93 16 21 C 0.51 13.11 7.37 87.62 0.65 13.76 16 22 O -0.57 -19.09 17.91 -3.05 -0.05 -19.15 16 23 N -0.66 -15.50 5.36 -304.08 -1.63 -17.13 16 24 C 0.15 3.24 6.50 38.16 0.25 3.49 16 25 C -0.16 -2.82 9.92 22.39 0.22 -2.60 16 26 C -0.09 -1.30 10.04 22.25 0.22 -1.08 16 27 C -0.14 -2.18 10.04 22.29 0.22 -1.96 16 28 C -0.08 -1.43 9.69 22.24 0.22 -1.21 16 29 C -0.12 -2.49 4.15 -19.77 -0.08 -2.57 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 3.72 5.32 -2.39 -0.01 3.71 16 36 H 0.01 0.58 8.10 -2.38 -0.02 0.56 16 37 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 39 H 0.07 2.37 8.04 -2.38 -0.02 2.35 16 40 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.42 8.41 7.80 -92.71 -0.72 7.69 16 43 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.13 1.81 7.27 -2.38 -0.02 1.79 16 45 H 0.41 8.85 8.83 -92.71 -0.82 8.03 16 46 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 48 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 49 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -81.63 404.86 1.78 -79.84 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.57 Total: 27.45 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.02 Total: 15.77 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -5.59 Total: -125.97 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.10 Total: -43.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -81.63 1.78 -79.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663676295.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.303 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds